SEQ2FUN

BioLiP
Download all results in tab-seperated text for 1072681 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
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  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.
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    # PDB
    (Resolution Å)
    Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    874001 8rnp:B (1.92) BS02 MG N/A GO:0004601 ... N/A 39367827
    874002 8rnq:A (1.8) BS01 HEM N/A GO:0004601 ... N/A 39367827
    874003 8rnq:A (1.8) BS02 MG N/A GO:0004601 ... N/A 39367827
    874004 8rnq:B (1.8) BS01 HEM N/A GO:0004601 ... N/A 39367827
    874005 8rnq:B (1.8) BS02 MG N/A GO:0004601 ... N/A 39367827
    874006 8rnr:A (1.72) BS01 HEM N/A GO:0004601 ... N/A 39367827
    874007 8rnr:A (1.72) BS02 MG N/A GO:0004601 ... N/A 39367827
    874008 8rnr:B (1.72) BS01 HEM N/A GO:0004601 ... N/A 39367827
    874009 8rnr:B (1.72) BS02 MG N/A GO:0004601 ... N/A 39367827
    874010 8rns:A (1.14) BS01 ZN N/A GO:0004064 ... P00918 39935522
    874011 8rns:A (1.14) BS02 A1H15 N/A GO:0004064 ... P00918 39935522
    874012 8ro0:A (2.9) BS01 rna N/A GO:0000386 ... P34369 38925148
    874013 8ro0:A (2.9) BS02 rna N/A GO:0000386 ... P34369 38925148
    874014 8ro0:A (2.9) BS03 rna N/A GO:0000386 ... P34369 38925148
    874015 8ro0:A (2.9) BS04 rna N/A GO:0000386 ... P34369 38925148
    874016 8ro0:A (2.9) BS05 IHP N/A GO:0000386 ... P34369 38925148
    874017 8ro0:C (2.9) BS01 rna N/A GO:0000398 ... Q23463 38925148
    874018 8ro0:C (2.9) BS02 GTP N/A GO:0000398 ... Q23463 38925148
    874019 8ro0:C (2.9) BS03 MG N/A GO:0000398 ... Q23463 38925148
    874020 8ro0:E (2.9) BS01 rna N/A GO:0000375 ... Q19211 38925148
    874021 8ro0:J (2.9) BS01 rna N/A GO:0000398 ... O16376 38925148
    874022 8ro0:J (2.9) BS02 IHP N/A GO:0000398 ... O16376 38925148
    874023 8ro0:L (2.9) BS01 rna N/A GO:0000398 ... G5EFC4 38925148
    874024 8ro0:L (2.9) BS02 rna N/A GO:0000398 ... G5EFC4 38925148
    874025 8ro0:M (2.9) BS01 rna N/A GO:0000974 ... Q09385 38925148
    874026 8ro0:M (2.9) BS02 rna N/A GO:0000974 ... Q09385 38925148
    874027 8ro0:N (2.9) BS01 rna N/A GO:0000398 ... P34313 38925148
    874028 8ro0:N (2.9) BS02 rna N/A GO:0000398 ... P34313 38925148
    874029 8ro0:N (2.9) BS03 ZN N/A GO:0000398 ... P34313 38925148
    874030 8ro0:N (2.9) BS04 ZN N/A GO:0000398 ... P34313 38925148
    874031 8ro0:N (2.9) BS05 ZN N/A GO:0000398 ... P34313 38925148
    874032 8ro0:O (2.9) BS01 rna N/A GO:0000974 ... Q22412 38925148
    874033 8ro0:O (2.9) BS02 rna N/A GO:0000974 ... Q22412 38925148
    874034 8ro0:O (2.9) BS03 ZN N/A GO:0000974 ... Q22412 38925148
    874035 8ro0:O (2.9) BS04 ZN N/A GO:0000974 ... Q22412 38925148
    874036 8ro0:O (2.9) BS05 ZN N/A GO:0000974 ... Q22412 38925148
    874037 8ro0:P (2.9) BS01 rna N/A GO:0000398 ... O45766 38925148
    874038 8ro0:P (2.9) BS02 rna N/A GO:0000398 ... O45766 38925148
    874039 8ro0:P (2.9) BS03 rna N/A GO:0000398 ... O45766 38925148
    874040 8ro0:R (2.9) BS01 rna N/A GO:0000398 ... Q22836 38925148
    874041 8ro0:R (2.9) BS02 rna N/A GO:0000398 ... Q22836 38925148
    874042 8ro0:T (2.9) BS01 rna N/A GO:0000398 ... G5EEL2 38925148
    874043 8ro0:W (2.9) BS01 rna N/A GO:0000398 ... O44729 38925148
    874044 8ro0:a (2.9) BS01 rna N/A GO:0000243 ... Q17348 38925148
    874045 8ro0:b (2.9) BS01 rna N/A GO:0000398 ... P91918 38925148
    874046 8ro0:c (2.9) BS01 rna N/A GO:0000387 ... Q10013 38925148
    874047 8ro0:d (2.9) BS01 rna N/A GO:0000387 ... Q18786 38925148
    874048 8ro0:e (2.9) BS01 rna N/A GO:0000387 ... Q9XTU6 38925148
    874049 8ro0:f (2.9) BS01 rna N/A GO:0000398 ... P34659 38925148
    874050 8ro0:g (2.9) BS01 rna N/A GO:0000398 ... Q9N4G9 38925148
    874051 8ro0:n (2.9) BS01 rna N/A GO:0000398 ... Q9N4G9 38925148
    874052 8ro0:o (2.9) BS01 rna N/A GO:0000389 ... Q9BLB6 38925148
    874053 8ro1:A (3.0) BS01 rna N/A GO:0000386 ... P34369 38925148
    874054 8ro1:A (3.0) BS02 rna N/A GO:0000386 ... P34369 38925148
    874055 8ro1:A (3.0) BS03 rna N/A GO:0000386 ... P34369 38925148
    874056 8ro1:A (3.0) BS04 rna N/A GO:0000386 ... P34369 38925148
    874057 8ro1:A (3.0) BS05 IHP N/A GO:0000386 ... P34369 38925148
    874058 8ro1:C (3.0) BS01 rna N/A GO:0000398 ... Q23463 38925148
    874059 8ro1:C (3.0) BS02 GTP N/A GO:0000398 ... Q23463 38925148
    874060 8ro1:C (3.0) BS03 MG N/A GO:0000398 ... Q23463 38925148
    874061 8ro1:DX (3.0) BS01 rna N/A GO:0003676 ... Q20875 38925148
    874062 8ro1:E (3.0) BS01 rna N/A GO:0000375 ... Q19211 38925148
    874063 8ro1:J (3.0) BS01 rna N/A GO:0000398 ... O16376 38925148
    874064 8ro1:J (3.0) BS02 IHP N/A GO:0000398 ... O16376 38925148
    874065 8ro1:L (3.0) BS01 rna N/A GO:0000398 ... G5EFC4 38925148
    874066 8ro1:L (3.0) BS02 rna N/A GO:0000398 ... G5EFC4 38925148
    874067 8ro1:L2 (3.0) BS01 rna N/A GO:0000398 ... Q10946 38925148
    874068 8ro1:L2 (3.0) BS02 rna N/A GO:0000398 ... Q10946 38925148
    874069 8ro1:L2 (3.0) BS03 ZN N/A GO:0000398 ... Q10946 38925148
    874070 8ro1:M (3.0) BS01 rna N/A GO:0000974 ... Q09385 38925148
    874071 8ro1:M (3.0) BS02 rna N/A GO:0000974 ... Q09385 38925148
    874072 8ro1:N (3.0) BS01 rna N/A GO:0000398 ... P34313 38925148
    874073 8ro1:N (3.0) BS02 rna N/A GO:0000398 ... P34313 38925148
    874074 8ro1:N (3.0) BS03 ZN N/A GO:0000398 ... P34313 38925148
    874075 8ro1:N (3.0) BS04 ZN N/A GO:0000398 ... P34313 38925148
    874076 8ro1:N (3.0) BS05 ZN N/A GO:0000398 ... P34313 38925148
    874077 8ro1:O (3.0) BS01 rna N/A GO:0000974 ... Q22412 38925148
    874078 8ro1:O (3.0) BS02 rna N/A GO:0000974 ... Q22412 38925148
    874079 8ro1:O (3.0) BS03 ZN N/A GO:0000974 ... Q22412 38925148
    874080 8ro1:O (3.0) BS04 ZN N/A GO:0000974 ... Q22412 38925148
    874081 8ro1:O (3.0) BS05 ZN N/A GO:0000974 ... Q22412 38925148
    874082 8ro1:P (3.0) BS01 rna N/A GO:0000398 ... O45766 38925148
    874083 8ro1:P (3.0) BS02 rna N/A GO:0000398 ... O45766 38925148
    874084 8ro1:P (3.0) BS03 rna N/A GO:0000398 ... O45766 38925148
    874085 8ro1:R (3.0) BS01 rna N/A GO:0000398 ... Q22836 38925148
    874086 8ro1:R (3.0) BS02 rna N/A GO:0000398 ... Q22836 38925148
    874087 8ro1:T (3.0) BS01 rna N/A GO:0000398 ... G5EEL2 38925148
    874088 8ro1:W (3.0) BS01 rna N/A GO:0000398 ... O44729 38925148
    874089 8ro1:W (3.0) BS02 rna N/A GO:0000398 ... O44729 38925148
    874090 8ro1:a (3.0) BS01 rna N/A GO:0000243 ... Q17348 38925148
    874091 8ro1:b (3.0) BS01 rna N/A GO:0000398 ... P91918 38925148
    874092 8ro1:c (3.0) BS01 rna N/A GO:0000387 ... Q10013 38925148
    874093 8ro1:d (3.0) BS01 rna N/A GO:0000387 ... Q18786 38925148
    874094 8ro1:e (3.0) BS01 rna N/A GO:0000387 ... Q9XTU6 38925148
    874095 8ro1:f (3.0) BS01 rna N/A GO:0000398 ... P34659 38925148
    874096 8ro1:g (3.0) BS01 rna N/A GO:0000398 ... Q9N4G9 38925148
    874097 8ro1:o (3.0) BS01 rna N/A GO:0000389 ... Q9BLB6 38925148
    874098 8ro1:p (3.0) BS01 rna N/A GO:0000398 ... Q21323 38925148
    874099 8ro2:A (3.5) BS01 rna N/A GO:0000244 ... Q6P2Q9 38925148
    874100 8ro2:A (3.5) BS02 rna N/A GO:0000244 ... Q6P2Q9 38925148
    874101 8ro2:A (3.5) BS03 rna N/A GO:0000244 ... Q6P2Q9 38925148
    874102 8ro2:A (3.5) BS04 rna N/A GO:0000244 ... Q6P2Q9 38925148
    874103 8ro2:A (3.5) BS05 IHP N/A GO:0000244 ... Q6P2Q9 38925148
    874104 8ro2:C (3.5) BS01 GTP N/A GO:0000244 ... Q15029 38925148
    874105 8ro2:DX (3.5) BS01 peptide N/A GO:0000398 ... O43143 38925148
    874106 8ro2:I (3.5) BS01 peptide N/A GO:0000349 ... Q9HCS7 38925148
    874107 8ro2:L (3.5) BS01 rna N/A GO:0000077 ... Q99459 38925148
    874108 8ro2:L (3.5) BS02 rna N/A GO:0000077 ... Q99459 38925148
    874109 8ro2:L2 (3.5) BS01 rna N/A GO:0000398 ... Q2TBE0 38925148
    874110 8ro2:L2 (3.5) BS02 rna N/A GO:0000398 ... Q2TBE0 38925148
    874111 8ro2:L2 (3.5) BS03 rna N/A GO:0000398 ... Q2TBE0 38925148
    874112 8ro2:M (3.5) BS01 rna N/A GO:0000398 ... O95926 38925148
    874113 8ro2:N (3.5) BS01 rna N/A GO:0000398 ... P41223 38925148
    874114 8ro2:N (3.5) BS02 ZN N/A GO:0000398 ... P41223 38925148
    874115 8ro2:N (3.5) BS03 ZN N/A GO:0000398 ... P41223 38925148
    874116 8ro2:N (3.5) BS04 ZN N/A GO:0000398 ... P41223 38925148
    874117 8ro2:O (3.5) BS01 rna N/A GO:0000398 ... Q9NW64 38925148
    874118 8ro2:O (3.5) BS02 rna N/A GO:0000398 ... Q9NW64 38925148
    874119 8ro2:P (3.5) BS01 rna N/A GO:0000398 ... Q9P013 38925148
    874120 8ro2:R (3.5) BS01 rna N/A GO:0000122 ... Q13573 38925148
    874121 8ro2:T (3.5) BS01 rna N/A GO:0000398 ... O43660 38925148
    874122 8ro2:W (3.5) BS01 rna N/A GO:0000398 ... O60508 38925148
    874123 8ro2:a (3.5) BS01 rna N/A GO:0000243 ... P62318 38925148
    874124 8ro2:b (3.5) BS01 rna N/A GO:0000244 ... P14678 38925148
    874125 8ro2:c (3.5) BS01 rna N/A GO:0000243 ... P62314 38925148
    874126 8ro2:d (3.5) BS01 rna N/A GO:0000244 ... P62316 38925148
    874127 8ro2:e (3.5) BS01 rna N/A GO:0000244 ... P62304 38925148
    874128 8ro2:f (3.5) BS01 rna N/A GO:0000244 ... P62306 38925148
    874129 8ro2:g (3.5) BS01 rna N/A GO:0000244 ... P62308 38925148
    874130 8ro4:A (2.51) BS01 MN N/A N/A N/A 39041709
    874131 8ro4:B (2.51) BS01 MN N/A N/A N/A 39041709
    874132 8ro4:C (2.51) BS01 MN N/A N/A N/A 39041709
    874133 8ro4:D (2.51) BS01 MN N/A N/A N/A 39041709
    874134 8ro4:E (2.51) BS01 MN N/A N/A N/A 39041709
    874135 8ro4:F (2.51) BS01 MN N/A N/A N/A 39041709
    874136 8roa:A (2.4355) BS01 ADP N/A GO:0005524 ... Q14683 39240714
    874137 8roa:C (2.4355) BS01 ADP N/A GO:0005524 ... Q14683 39240714
    874138 8rob:A (2.5019) BS01 MG N/A GO:0005524 ... Q14683 39240714
    874139 8rob:A (2.5019) BS02 AGS N/A GO:0005524 ... Q14683 39240714
    874140 8roe:A (1.36) BS01 ADP N/A GO:0005524 ... Q14683 39240714
    874141 8rof:A (1.65) BS01 ADP N/A GO:0005524 ... Q14683 39240714
    874142 8rog:A (1.94) BS01 MG N/A GO:0005524 ... Q14683 39240714
    874143 8rog:A (1.94) BS02 AGS N/A GO:0005524 ... Q14683 39240714
    874144 8roi:A (2.45) BS01 ADP N/A GO:0005524 ... Q9UQE7 39240714
    874145 8roj:A (3.0) BS01 ADP N/A GO:0005524 ... Q9UQE7 39240714
    874146 8rok:A (2.25) BS01 AGS N/A GO:0005524 ... Q9UQE7 39240714
    874147 8rok:A (2.25) BS02 AGS N/A GO:0005524 ... Q9UQE7 39240714
    874148 8rok:C (2.25) BS01 AGS N/A GO:0005524 ... Q9UQE7 39240714
    874149 8rok:C (2.25) BS02 AGS N/A GO:0005524 ... Q9UQE7 39240714
    874150 8rol:A (3.11) BS01 AGS N/A GO:0005524 ... Q9UQE7 39240714
    874151 8rom:A (1.69) BS01 FAD 2.7.7.2 GO:0003824 ... Q8NFF5 38688286
    874152 8roo:A (1.4) BS01 peptide ? N/A S6AU73 38737448
    874153 8roo:A (1.4) BS02 MG ? N/A S6AU73 38737448
    874154 8rop:A (1.15) BS01 peptide ? N/A S6AU73 38737448
    874155 8ros:AAA (1.553) BS01 FMN N/A GO:0004733 ... Q9NVS9 N/A
    874156 8ros:AAA (1.553) BS02 A1H16 N/A GO:0004733 ... Q9NVS9 N/A
    874157 8rou:A (1.08) BS01 ZN N/A GO:0004064 ... P00918 39935522
    874158 8rou:A (1.08) BS02 A1H15 N/A GO:0004064 ... P00918 39935522
    874159 8rov:A (2.36) BS01 CA N/A N/A Q6EIG7 39361900
    874160 8rov:A (2.36) BS02 CA N/A N/A Q6EIG7 39361900
    874161 8rov:A (2.36) BS03 MMA N/A N/A Q6EIG7 39361900
    874162 8rov:B (2.36) BS01 CA N/A N/A Q6EIG7 39361900
    874163 8rov:B (2.36) BS02 CA N/A N/A Q6EIG7 39361900
    874164 8rov:B (2.36) BS03 MMA N/A N/A Q6EIG7 39361900
    874165 8row:A (1.05) BS01 ZN N/A GO:0004064 ... P00918 39935522
    874166 8row:A (1.05) BS02 A1H15 N/A GO:0004064 ... P00918 39935522
    874167 8row:A (1.05) BS03 A1H15 N/A GO:0004064 ... P00918 39935522
    874168 8rox:A (3.3) BS01 A1H17 ? GO:0000209 ... Q66K64 38513086
    874169 8roy:A (3.1) BS01 A1H18 ? GO:0000209 ... Q66K64 38513086
    874170 8rp0:AAA (1.64) BS01 GLU N/A GO:0000162 ... P00903 40365074
    874171 8rp0:CCC (1.64) BS01 ISJ N/A GO:0000162 ... P05041 40365074
    874172 8rp0:CCC (1.64) BS02 TRP N/A GO:0000162 ... P05041 40365074
    874173 8rp0:CCC (1.64) BS03 MG N/A GO:0000162 ... P05041 40365074
    874174 8rp0:DDD (1.64) BS01 GLU N/A GO:0000162 ... P05041 40365074
    874175 8rp0:DDD (1.64) BS02 ISJ N/A GO:0000162 ... P05041 40365074
    874176 8rp0:DDD (1.64) BS03 TRP N/A GO:0000162 ... P05041 40365074
    874177 8rp0:DDD (1.64) BS04 MG N/A GO:0000162 ... P05041 40365074
    874178 8rp1:AAA (1.86) BS01 GLU N/A GO:0000162 ... P00903 40365074
    874179 8rp1:CCC (1.86) BS01 TRP N/A GO:0000162 ... P05041 40365074
    874180 8rp1:CCC (1.86) BS02 MG N/A GO:0000162 ... P05041 40365074
    874181 8rp1:DDD (1.86) BS01 GLU N/A GO:0000162 ... P05041 40365074
    874182 8rp1:DDD (1.86) BS02 TRP N/A GO:0000162 ... P05041 40365074
    874183 8rp2:CCC (1.98) BS01 TRP N/A GO:0000162 ... P05041 40365074
    874184 8rp2:CCC (1.98) BS02 MG N/A GO:0000162 ... P05041 40365074
    874185 8rp2:DDD (1.98) BS01 TRP N/A GO:0000162 ... P05041 40365074
    874186 8rp2:DDD (1.98) BS02 MG N/A GO:0000162 ... P05041 40365074
    874187 8rp6:AAA (2.45) BS01 ZN N/A GO:0000162 ... P00903 40365074
    874188 8rp6:BBB (2.45) BS01 ZN N/A GO:0000162 ... P00903 40365074
    874189 8rp6:CCC (2.45) BS01 TRP N/A GO:0000162 ... P05041 40365074
    874190 8rp6:DDD (2.45) BS01 TRP N/A GO:0000162 ... P05041 40365074
    874191 8rpa:A (2.261) BS01 AP5 N/A GO:0004001 ... A0A1D6E5Z5 40063605
    874192 8rpc:A (2.079) BS01 A1H19 N/A GO:0000166 ... W7JM86 39441986
    874193 8rpf:A (2.0) BS01 1BO N/A GO:0016614 ... N/A 39470785
    874194 8rpf:A (2.0) BS02 1BO N/A GO:0016614 ... N/A 39470785
    874195 8rpf:A (2.0) BS03 FAD N/A GO:0016614 ... N/A 39470785
    874196 8rpf:B (2.0) BS01 FAD N/A GO:0016614 ... N/A 39470785
    874197 8rpg:A (2.0) BS01 FAD N/A GO:0016614 ... N/A 39470785
    874198 8rph:A (2.96) BS01 FAD N/A GO:0000287 ... A0AAT8XUE4 38874074
    874199 8rph:A (2.96) BS02 MG N/A GO:0000287 ... A0AAT8XUE4 38874074
    874200 8rph:A (2.96) BS03 A1H2A N/A GO:0000287 ... A0AAT8XUE4 38874074

    Reference:
  • Chengxin Zhang, Xi Zhang, Lydia Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).