SEQ2FUN

BioLiP
Download all results in tab-seperated text for 942758 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
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  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
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    # PDB
    (Resolution Å)
    Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    874001 8siy:E (2.9) BS01 dna ? GO:0000786 ... P06897 37551430
    874002 8siy:E (2.9) BS02 dna ? GO:0000786 ... P06897 37551430
    874003 8siy:F (2.9) BS01 dna ? GO:0000786 ... P02281 37551430
    874004 8siy:F (2.9) BS02 dna ? GO:0000786 ... P02281 37551430
    874005 8siy:G (2.9) BS01 dna ? GO:0000786 ... P84233 37551430
    874006 8siy:G (2.9) BS02 dna ? GO:0000786 ... P84233 37551430
    874007 8siy:H (2.9) BS01 dna ? GO:0000786 ... P62799 37551430
    874008 8siy:H (2.9) BS02 dna ? GO:0000786 ... P62799 37551430
    874009 8siy:I (2.9) BS01 dna ? GO:0000786 ... P06897 37551430
    874010 8siy:I (2.9) BS02 dna ? GO:0000786 ... P06897 37551430
    874011 8siy:J (2.9) BS01 dna ? GO:0000786 ... P02281 37551430
    874012 8siy:J (2.9) BS02 dna ? GO:0000786 ... P02281 37551430
    874013 8sj0:A (2.55) BS01 dna 2.7.7.86 N/A Q8C6L5 38740774
    874014 8sj0:A (2.55) BS02 dna 2.7.7.86 N/A Q8C6L5 38740774
    874015 8sj0:A (2.55) BS03 dna 2.7.7.86 N/A Q8C6L5 38740774
    874016 8sj0:A (2.55) BS04 dna 2.7.7.86 N/A Q8C6L5 38740774
    874017 8sj0:A (2.55) BS05 DTP 2.7.7.86 N/A Q8C6L5 38740774
    874018 8sj0:A (2.55) BS06 ZN 2.7.7.86 N/A Q8C6L5 38740774
    874019 8sj0:A (2.55) BS07 MG 2.7.7.86 N/A Q8C6L5 38740774
    874020 8sj0:C (2.55) BS01 dna 2.7.7.86 N/A Q8C6L5 38740774
    874021 8sj0:C (2.55) BS02 dna 2.7.7.86 N/A Q8C6L5 38740774
    874022 8sj0:C (2.55) BS03 dna 2.7.7.86 N/A Q8C6L5 38740774
    874023 8sj0:C (2.55) BS04 dna 2.7.7.86 N/A Q8C6L5 38740774
    874024 8sj0:C (2.55) BS05 DTP 2.7.7.86 N/A Q8C6L5 38740774
    874025 8sj0:C (2.55) BS06 ZN 2.7.7.86 N/A Q8C6L5 38740774
    874026 8sj0:C (2.55) BS07 MG 2.7.7.86 N/A Q8C6L5 38740774
    874027 8sj1:A (2.81) BS01 dna 2.7.7.86 N/A Q8C6L5 38740774
    874028 8sj1:A (2.81) BS02 dna 2.7.7.86 N/A Q8C6L5 38740774
    874029 8sj1:A (2.81) BS03 dna 2.7.7.86 N/A Q8C6L5 38740774
    874030 8sj1:A (2.81) BS04 dna 2.7.7.86 N/A Q8C6L5 38740774
    874031 8sj1:A (2.81) BS05 3AT 2.7.7.86 N/A Q8C6L5 38740774
    874032 8sj1:A (2.81) BS06 ZN 2.7.7.86 N/A Q8C6L5 38740774
    874033 8sj1:A (2.81) BS07 MG 2.7.7.86 N/A Q8C6L5 38740774
    874034 8sj1:C (2.81) BS01 dna 2.7.7.86 N/A Q8C6L5 38740774
    874035 8sj1:C (2.81) BS02 dna 2.7.7.86 N/A Q8C6L5 38740774
    874036 8sj1:C (2.81) BS03 dna 2.7.7.86 N/A Q8C6L5 38740774
    874037 8sj1:C (2.81) BS04 3AT 2.7.7.86 N/A Q8C6L5 38740774
    874038 8sj1:C (2.81) BS05 ZN 2.7.7.86 N/A Q8C6L5 38740774
    874039 8sj1:C (2.81) BS06 MG 2.7.7.86 N/A Q8C6L5 38740774
    874040 8sj2:A (2.23) BS01 dna 2.7.7.86 N/A Q8C6L5 38740774
    874041 8sj2:A (2.23) BS02 dna 2.7.7.86 N/A Q8C6L5 38740774
    874042 8sj2:A (2.23) BS03 dna 2.7.7.86 N/A Q8C6L5 38740774
    874043 8sj2:A (2.23) BS04 ATP 2.7.7.86 N/A Q8C6L5 38740774
    874044 8sj2:A (2.23) BS05 DGT 2.7.7.86 N/A Q8C6L5 38740774
    874045 8sj2:A (2.23) BS06 MG 2.7.7.86 N/A Q8C6L5 38740774
    874046 8sj2:A (2.23) BS07 ZN 2.7.7.86 N/A Q8C6L5 38740774
    874047 8sj2:C (2.23) BS01 dna 2.7.7.86 N/A Q8C6L5 38740774
    874048 8sj2:C (2.23) BS02 dna 2.7.7.86 N/A Q8C6L5 38740774
    874049 8sj2:C (2.23) BS03 dna 2.7.7.86 N/A Q8C6L5 38740774
    874050 8sj2:C (2.23) BS04 ATP 2.7.7.86 N/A Q8C6L5 38740774
    874051 8sj2:C (2.23) BS05 DGT 2.7.7.86 N/A Q8C6L5 38740774
    874052 8sj2:C (2.23) BS06 MG 2.7.7.86 N/A Q8C6L5 38740774
    874053 8sj2:C (2.23) BS07 ZN 2.7.7.86 N/A Q8C6L5 38740774
    874054 8sj7:A (2.09) BS01 rna ? GO:0003723 ... Q09312 37953271
    874055 8sj8:A (2.5) BS01 ZN 2.7.7.86 N/A Q8N884 38740774
    874056 8sj8:A (2.5) BS02 OKR 2.7.7.86 N/A Q8N884 38740774
    874057 8sjb:A (1.74) BS01 CA N/A GO:0002523 ... P05109 N/A
    874058 8sjb:A (1.74) BS02 CA N/A GO:0002523 ... P05109 N/A
    874059 8sjb:A (1.74) BS03 ZN N/A GO:0002523 ... P05109 N/A
    874060 8sjb:B (1.74) BS01 CA N/A GO:0002523 ... P05109 N/A
    874061 8sjb:B (1.74) BS02 CA N/A GO:0002523 ... P05109 N/A
    874062 8sjb:C (1.74) BS01 ZN N/A GO:0005509 ... P06702 N/A
    874063 8sjb:C (1.74) BS02 CA N/A GO:0005509 ... P06702 N/A
    874064 8sjb:C (1.74) BS03 CA N/A GO:0005509 ... P06702 N/A
    874065 8sjb:D (1.74) BS01 CA N/A GO:0005509 ... P06702 N/A
    874066 8sjb:D (1.74) BS02 CA N/A GO:0005509 ... P06702 N/A
    874067 8sjc:A (1.87) BS01 CA N/A GO:0002523 ... P05109 N/A
    874068 8sjc:A (1.87) BS02 CA N/A GO:0002523 ... P05109 N/A
    874069 8sjc:A (1.87) BS03 ZN N/A GO:0002523 ... P05109 N/A
    874070 8sjc:B (1.87) BS01 MG N/A GO:0002523 ... P05109 N/A
    874071 8sjc:B (1.87) BS02 CA N/A GO:0002523 ... P05109 N/A
    874072 8sjc:B (1.87) BS03 ZN N/A GO:0002523 ... P05109 N/A
    874073 8sjc:C (1.87) BS01 MG N/A GO:0002523 ... P06702 N/A
    874074 8sjc:C (1.87) BS02 CA N/A GO:0002523 ... P06702 N/A
    874075 8sjc:C (1.87) BS03 ZN N/A GO:0002523 ... P06702 N/A
    874076 8sjc:D (1.87) BS01 CA N/A GO:0002523 ... P06702 N/A
    874077 8sjc:D (1.87) BS02 CA N/A GO:0002523 ... P06702 N/A
    874078 8sjc:D (1.87) BS03 ZN N/A GO:0002523 ... P06702 N/A
    874079 8sjd:A (5.1) BS01 dna ? GO:0003677 ... Q25438 37491363
    874080 8sjd:A (5.1) BS02 dna ? GO:0003677 ... Q25438 37491363
    874081 8sjd:A (5.1) BS03 dna ? GO:0003677 ... Q25438 37491363
    874082 8sjd:A (5.1) BS04 dna ? GO:0003677 ... Q25438 37491363
    874083 8sjd:B (5.1) BS01 dna ? GO:0003677 ... Q25438 37491363
    874084 8sjd:B (5.1) BS02 dna ? GO:0003677 ... Q25438 37491363
    874085 8sjd:B (5.1) BS03 dna ? GO:0003677 ... Q25438 37491363
    874086 8sjd:B (5.1) BS04 dna ? GO:0003677 ... Q25438 37491363
    874087 8sjd:B (5.1) BS05 dna ? GO:0003677 ... Q25438 37491363
    874088 8sjd:C (5.1) BS01 dna ? GO:0003677 ... Q25438 37491363
    874089 8sjd:C (5.1) BS02 dna ? GO:0003677 ... Q25438 37491363
    874090 8sjd:C (5.1) BS03 dna ? GO:0003677 ... Q25438 37491363
    874091 8sjd:D (5.1) BS01 dna ? GO:0003677 ... Q25438 37491363
    874092 8sjd:D (5.1) BS02 dna ? GO:0003677 ... Q25438 37491363
    874093 8sjd:D (5.1) BS03 dna ? GO:0003677 ... Q25438 37491363
    874094 8sjd:D (5.1) BS04 dna ? GO:0003677 ... Q25438 37491363
    874095 8sjh:A (1.6) BS01 CA N/A GO:0005506 ... N/A 37352018
    874096 8sjh:A (1.6) BS02 CA N/A GO:0005506 ... N/A 37352018
    874097 8sji:A (1.5) BS01 CA N/A GO:0005506 ... N/A 37352018
    874098 8sji:C (1.5) BS01 CA N/A GO:0005506 ... N/A 37352018
    874099 8sjk:A (2.22) BS01 CFF N/A N/A N/A 38958508
    874100 8sjx:A (2.5) BS01 HWP ? GO:0002088 ... Q6J8I9 39222068
    874101 8sjx:A (2.5) BS02 HWP ? GO:0002088 ... Q6J8I9 39222068
    874102 8sjx:A (2.5) BS03 HWP ? GO:0002088 ... Q6J8I9 39222068
    874103 8sjx:A (2.5) BS04 HWP ? GO:0002088 ... Q6J8I9 39222068
    874104 8sjx:A (2.5) BS05 HWP ? GO:0002088 ... Q6J8I9 39222068
    874105 8sjx:A (2.5) BS06 CLR ? GO:0002088 ... Q6J8I9 39222068
    874106 8sjy:A (2.35) BS01 HWP ? GO:0002088 ... Q6J8I9 39222068
    874107 8sjy:A (2.35) BS02 HWP ? GO:0002088 ... Q6J8I9 39222068
    874108 8sjy:A (2.35) BS03 HWP ? GO:0002088 ... Q6J8I9 39222068
    874109 8sjy:A (2.35) BS04 CLR ? GO:0002088 ... Q6J8I9 39222068
    874110 8sjy:A (2.35) BS05 CLR ? GO:0002088 ... Q6J8I9 39222068
    874111 8sjy:A (2.35) BS06 CLR ? GO:0002088 ... Q6J8I9 39222068
    874112 8sk0:A (1.51) BS01 NAD 4.2.1.46 GO:0000166 ... A0A1C5ADV9 37286037
    874113 8sk0:A (1.51) BS02 TYD 4.2.1.46 GO:0000166 ... A0A1C5ADV9 37286037
    874114 8sk0:B (1.51) BS01 NAD 4.2.1.46 GO:0000166 ... A0A1C5ADV9 37286037
    874115 8sk1:A (2.0) BS01 H73 N/A GO:0003848 ... A0A6L7HDR0 N/A
    874116 8sk1:A (2.0) BS02 H73 N/A GO:0003848 ... A0A6L7HDR0 N/A
    874117 8sk1:B (2.0) BS01 H73 N/A GO:0003848 ... A0A6L7HDR0 N/A
    874118 8sk1:B (2.0) BS02 H73 N/A GO:0003848 ... A0A6L7HDR0 N/A
    874119 8sk2:A (1.3) BS01 ZN 3.5.2.6 N/A C7C422 37549809
    874120 8sk2:A (1.3) BS02 ZN 3.5.2.6 N/A C7C422 37549809
    874121 8sk4:A (2.0) BS01 I3R 2.1.1.56
    2.1.1.57
    2.7.7.48
    2.7.7.50
    3.1.13.-
    3.4.19.12
    3.4.22.-
    3.4.22.69
    3.6.4.12
    3.6.4.13
    4.6.1.-
    GO:0008233 ... P0DTD1 37069799
    874122 8skb:A (2.58) BS01 NAD N/A GO:0047918 ... N/A 38224521
    874123 8skb:B (2.58) BS01 NAD N/A GO:0047918 ... N/A 38224521
    874124 8skb:C (2.58) BS01 NAD N/A GO:0047918 ... N/A 38224521
    874125 8skb:D (2.58) BS01 NAD N/A GO:0047918 ... N/A 38224521
    874126 8skf:A (1.8) BS01 NAD N/A GO:0008802 ... N/A N/A
    874127 8skf:A (1.8) BS02 CA N/A GO:0008802 ... N/A N/A
    874128 8skf:B (1.8) BS01 NAD N/A GO:0008802 ... N/A N/A
    874129 8skf:B (1.8) BS02 CA N/A GO:0008802 ... N/A N/A
    874130 8skh:A (1.882) BS01 A1W 2.1.1.56
    2.1.1.57
    2.7.7.48
    2.7.7.50
    3.1.13.-
    3.4.19.12
    3.4.22.-
    3.4.22.69
    3.6.4.12
    3.6.4.13
    4.6.1.-
    GO:0008233 ... P0DTD1 37069799
    874131 8ski:A (2.163) BS01 dna 2.7.7.7 GO:0003684 ... Q9Y253 N/A
    874132 8ski:A (2.163) BS02 dna 2.7.7.7 GO:0003684 ... Q9Y253 N/A
    874133 8ski:A (2.163) BS03 B7P 2.7.7.7 GO:0003684 ... Q9Y253 N/A
    874134 8ski:A (2.163) BS04 CA 2.7.7.7 GO:0003684 ... Q9Y253 N/A
    874135 8skj:A (2.01) BS01 peptide N/A N/A N/A 37517699
    874136 8skj:B (2.01) BS01 peptide N/A N/A N/A 37517699
    874137 8skj:D (2.01) BS01 peptide N/A N/A N/A 37517699
    874138 8skj:G (2.01) BS01 peptide N/A N/A N/A 37517699
    874139 8skl:A (1.55) BS01 V2O 3.1.3.48 GO:0004725 ... P18031 37500611
    874140 8skn:A (2.41) BS01 6I9 3.6.5.5 GO:0003924 ... O00429 37583827
    874141 8skn:B (2.41) BS01 6I9 3.6.5.5 GO:0003924 ... O00429 37583827
    874142 8sko:A (1.3) BS01 ZN 3.5.2.6 GO:0008270 ... C7C422 37549809
    874143 8sko:A (1.3) BS02 ZN 3.5.2.6 GO:0008270 ... C7C422 37549809
    874144 8sko:A (1.3) BS03 X8Z 3.5.2.6 GO:0008270 ... C7C422 37549809
    874145 8sko:B (1.3) BS01 ZN 3.5.2.6 GO:0008270 ... C7C422 37549809
    874146 8sko:B (1.3) BS02 ZN 3.5.2.6 GO:0008270 ... C7C422 37549809
    874147 8sko:B (1.3) BS03 X8Z 3.5.2.6 GO:0008270 ... C7C422 37549809
    874148 8skp:A (1.3) BS01 ZN 3.5.2.6 GO:0008270 ... C7C422 37549809
    874149 8skp:A (1.3) BS02 ZN 3.5.2.6 GO:0008270 ... C7C422 37549809
    874150 8skp:A (1.3) BS03 WAF 3.5.2.6 GO:0008270 ... C7C422 37549809
    874151 8skr:A (2.99) BS01 PLP 2.6.1.1
    2.6.1.7
    GO:0003723 ... P00505 37839702
    874152 8skr:C (2.99) BS01 PLP 2.6.1.1
    2.6.1.7
    GO:0003723 ... P00505 37839702
    874153 8sks:A (2.91) BS01 MN 1.15.1.1 GO:0000302 ... P04179 37839702
    874154 8sks:B (2.91) BS01 MN 1.15.1.1 GO:0000302 ... P04179 37839702
    874155 8sks:C (2.91) BS01 MN 1.15.1.1 GO:0000302 ... P04179 37839702
    874156 8sks:D (2.91) BS01 MN 1.15.1.1 GO:0000302 ... P04179 37839702
    874157 8skt:A (2.69) BS01 dna 2.7.7.86 N/A Q8C6L5 38740774
    874158 8skt:A (2.69) BS02 dna 2.7.7.86 N/A Q8C6L5 38740774
    874159 8skt:A (2.69) BS03 dna 2.7.7.86 N/A Q8C6L5 38740774
    874160 8skt:A (2.69) BS04 dna 2.7.7.86 N/A Q8C6L5 38740774
    874161 8skt:A (2.69) BS05 ATP 2.7.7.86 N/A Q8C6L5 38740774
    874162 8skt:A (2.69) BS06 ZN 2.7.7.86 N/A Q8C6L5 38740774
    874163 8skt:A (2.69) BS07 MN 2.7.7.86 N/A Q8C6L5 38740774
    874164 8skt:A (2.69) BS08 MN 2.7.7.86 N/A Q8C6L5 38740774
    874165 8skt:C (2.69) BS01 dna 2.7.7.86 N/A Q8C6L5 38740774
    874166 8skt:C (2.69) BS02 dna 2.7.7.86 N/A Q8C6L5 38740774
    874167 8skt:C (2.69) BS03 dna 2.7.7.86 N/A Q8C6L5 38740774
    874168 8skt:C (2.69) BS04 ATP 2.7.7.86 N/A Q8C6L5 38740774
    874169 8skt:C (2.69) BS05 ZN 2.7.7.86 N/A Q8C6L5 38740774
    874170 8skt:C (2.69) BS06 MN 2.7.7.86 N/A Q8C6L5 38740774
    874171 8skt:C (2.69) BS07 MN 2.7.7.86 N/A Q8C6L5 38740774
    874172 8skv:A (3.1) BS01 peptide ? N/A P01876 37872175
    874173 8skv:A (3.1) BS02 peptide ? N/A P01876 37872175
    874174 8sky:A (2.4) BS01 OXL ? GO:0003824 ... O06724 38047707
    874175 8sky:A (2.4) BS02 MN ? GO:0003824 ... O06724 38047707
    874176 8sky:B (2.4) BS01 OXL ? GO:0003824 ... O06724 38047707
    874177 8sky:B (2.4) BS02 MN ? GO:0003824 ... O06724 38047707
    874178 8skz:A (3.5) BS01 dna N/A N/A Q9NRZ9
    Q9XFH4
    N/A
    874179 8skz:A (3.5) BS02 dna N/A N/A Q9NRZ9
    Q9XFH4
    N/A
    874180 8skz:A (3.5) BS03 ADP N/A N/A Q9NRZ9
    Q9XFH4
    N/A
    874181 8skz:A (3.5) BS04 BEF N/A N/A Q9NRZ9
    Q9XFH4
    N/A
    874182 8skz:B (3.5) BS01 dna N/A GO:0000786 ... P84233 N/A
    874183 8skz:B (3.5) BS02 dna N/A GO:0000786 ... P84233 N/A
    874184 8skz:C (3.5) BS01 dna N/A GO:0000786 ... P06897 N/A
    874185 8skz:C (3.5) BS02 dna N/A GO:0000786 ... P06897 N/A
    874186 8skz:D (3.5) BS01 dna N/A GO:0000786 ... P02281 N/A
    874187 8skz:E (3.5) BS01 dna N/A GO:0000786 ... P84233 N/A
    874188 8skz:E (3.5) BS02 dna N/A GO:0000786 ... P84233 N/A
    874189 8skz:F (3.5) BS01 dna N/A N/A A0A8J1LTD2 N/A
    874190 8skz:G (3.5) BS01 dna N/A GO:0000786 ... P06897 N/A
    874191 8skz:H (3.5) BS01 dna N/A GO:0000786 ... P02281 N/A
    874192 8skz:H (3.5) BS02 dna N/A GO:0000786 ... P02281 N/A
    874193 8skz:I (3.5) BS01 dna N/A N/A A0A8J1LTD2 N/A
    874194 8skz:I (3.5) BS02 dna N/A N/A A0A8J1LTD2 N/A
    874195 8sl1:A (3.13) BS01 ZN 3.4.24.- GO:0008237 ... Q9BXP8 37898658
    874196 8sl1:A (3.13) BS02 CA 3.4.24.- GO:0008237 ... Q9BXP8 37898658
    874197 8sl1:A (3.13) BS03 CA 3.4.24.- GO:0008237 ... Q9BXP8 37898658
    874198 8sl7:A (2.07) BS01 BY3 4.1.99.1 GO:0006520 ... N/A 37633277
    874199 8sl7:B (2.07) BS01 BY3 4.1.99.1 GO:0006520 ... N/A 37633277
    874200 8sl7:C (2.07) BS01 BY3 4.1.99.1 GO:0006520 ... N/A 37633277

    Reference:
  • Chengxin Zhang, Xi Zhang, Lydia Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).