SEQ2FUN

BioLiP
Download all results in tab-seperated text for 1072681 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.
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    # PDB
    (Resolution Å)
    Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    874201 8rph:B (2.96) BS01 FAD N/A GO:0000287 ... A0AAT8XUE4 38874074
    874202 8rph:B (2.96) BS02 MG N/A GO:0000287 ... A0AAT8XUE4 38874074
    874203 8rph:B (2.96) BS03 A1H2A N/A GO:0000287 ... A0AAT8XUE4 38874074
    874204 8rph:C (2.96) BS01 FAD N/A GO:0000287 ... A0AAT8XUE4 38874074
    874205 8rph:C (2.96) BS02 MG N/A GO:0000287 ... A0AAT8XUE4 38874074
    874206 8rph:C (2.96) BS03 A1H2A N/A GO:0000287 ... A0AAT8XUE4 38874074
    874207 8rph:C (2.96) BS04 A1H2A N/A GO:0000287 ... A0AAT8XUE4 38874074
    874208 8rph:D (2.96) BS01 A1H2A N/A GO:0000287 ... A0AAT8XUE4 38874074
    874209 8rph:D (2.96) BS02 FAD N/A GO:0000287 ... A0AAT8XUE4 38874074
    874210 8rph:D (2.96) BS03 MG N/A GO:0000287 ... A0AAT8XUE4 38874074
    874211 8rph:D (2.96) BS04 A1H2A N/A GO:0000287 ... A0AAT8XUE4 38874074
    874212 8rph:E (2.96) BS01 FAD N/A GO:0000287 ... A0AAT8XUE4 38874074
    874213 8rph:E (2.96) BS02 MG N/A GO:0000287 ... A0AAT8XUE4 38874074
    874214 8rph:E (2.96) BS03 A1H2A N/A GO:0000287 ... A0AAT8XUE4 38874074
    874215 8rph:F (2.96) BS01 FAD N/A GO:0000287 ... A0AAT8XUE4 38874074
    874216 8rph:F (2.96) BS02 MG N/A GO:0000287 ... A0AAT8XUE4 38874074
    874217 8rph:F (2.96) BS03 A1H2A N/A GO:0000287 ... A0AAT8XUE4 38874074
    874218 8rpi:A (2.71) BS01 FAD N/A GO:0000287 ... A0AAT8XUE4 38874074
    874219 8rpi:A (2.71) BS02 MG N/A GO:0000287 ... A0AAT8XUE4 38874074
    874220 8rpi:A (2.71) BS03 TDL N/A GO:0000287 ... A0AAT8XUE4 38874074
    874221 8rpi:A (2.71) BS04 TDL N/A GO:0000287 ... A0AAT8XUE4 38874074
    874222 8rpi:B (2.71) BS01 TDL N/A GO:0000287 ... A0AAT8XUE4 38874074
    874223 8rpi:B (2.71) BS02 FAD N/A GO:0000287 ... A0AAT8XUE4 38874074
    874224 8rpi:B (2.71) BS03 MG N/A GO:0000287 ... A0AAT8XUE4 38874074
    874225 8rpi:B (2.71) BS04 TDL N/A GO:0000287 ... A0AAT8XUE4 38874074
    874226 8rpi:C (2.71) BS01 FAD N/A GO:0000287 ... A0AAT8XUE4 38874074
    874227 8rpi:C (2.71) BS02 MG N/A GO:0000287 ... A0AAT8XUE4 38874074
    874228 8rpi:C (2.71) BS03 TDL N/A GO:0000287 ... A0AAT8XUE4 38874074
    874229 8rpi:C (2.71) BS04 TDL N/A GO:0000287 ... A0AAT8XUE4 38874074
    874230 8rpi:D (2.71) BS01 FAD N/A GO:0000287 ... A0AAT8XUE4 38874074
    874231 8rpi:D (2.71) BS02 MG N/A GO:0000287 ... A0AAT8XUE4 38874074
    874232 8rpi:D (2.71) BS03 TDL N/A GO:0000287 ... A0AAT8XUE4 38874074
    874233 8rpi:E (2.71) BS01 FAD N/A GO:0000287 ... A0AAT8XUE4 38874074
    874234 8rpi:E (2.71) BS02 MG N/A GO:0000287 ... A0AAT8XUE4 38874074
    874235 8rpi:E (2.71) BS03 TDL N/A GO:0000287 ... A0AAT8XUE4 38874074
    874236 8rpi:E (2.71) BS04 TDL N/A GO:0000287 ... A0AAT8XUE4 38874074
    874237 8rpi:F (2.71) BS01 FAD N/A GO:0000287 ... A0AAT8XUE4 38874074
    874238 8rpi:F (2.71) BS02 MG N/A GO:0000287 ... A0AAT8XUE4 38874074
    874239 8rpi:F (2.71) BS03 TDL N/A GO:0000287 ... A0AAT8XUE4 38874074
    874240 8rpj:A (1.9) BS01 TPP N/A GO:0000287 ... A0AAT8XUE4 38874074
    874241 8rpj:A (1.9) BS02 FAD N/A GO:0000287 ... A0AAT8XUE4 38874074
    874242 8rpj:A (1.9) BS03 MG N/A GO:0000287 ... A0AAT8XUE4 38874074
    874243 8rpj:A (1.9) BS04 TPP N/A GO:0000287 ... A0AAT8XUE4 38874074
    874244 8rpj:B (1.9) BS01 TPP N/A GO:0000287 ... A0AAT8XUE4 38874074
    874245 8rpj:B (1.9) BS02 TPP N/A GO:0000287 ... A0AAT8XUE4 38874074
    874246 8rpj:B (1.9) BS03 FAD N/A GO:0000287 ... A0AAT8XUE4 38874074
    874247 8rpj:B (1.9) BS04 MG N/A GO:0000287 ... A0AAT8XUE4 38874074
    874248 8rpj:C (1.9) BS01 TPP N/A GO:0000287 ... A0AAT8XUE4 38874074
    874249 8rpj:C (1.9) BS02 FAD N/A GO:0000287 ... A0AAT8XUE4 38874074
    874250 8rpj:C (1.9) BS03 MG N/A GO:0000287 ... A0AAT8XUE4 38874074
    874251 8rpj:C (1.9) BS04 TPP N/A GO:0000287 ... A0AAT8XUE4 38874074
    874252 8rpj:D (1.9) BS01 TPP N/A GO:0000287 ... A0AAT8XUE4 38874074
    874253 8rpj:D (1.9) BS02 FAD N/A GO:0000287 ... A0AAT8XUE4 38874074
    874254 8rpj:D (1.9) BS03 MG N/A GO:0000287 ... A0AAT8XUE4 38874074
    874255 8rpj:D (1.9) BS04 TPP N/A GO:0000287 ... A0AAT8XUE4 38874074
    874256 8rpj:E (1.9) BS01 TPP N/A GO:0000287 ... A0AAT8XUE4 38874074
    874257 8rpj:E (1.9) BS02 TPP N/A GO:0000287 ... A0AAT8XUE4 38874074
    874258 8rpj:E (1.9) BS03 FAD N/A GO:0000287 ... A0AAT8XUE4 38874074
    874259 8rpj:E (1.9) BS04 MG N/A GO:0000287 ... A0AAT8XUE4 38874074
    874260 8rpj:F (1.9) BS01 TPP N/A GO:0000287 ... A0AAT8XUE4 38874074
    874261 8rpj:F (1.9) BS02 TPP N/A GO:0000287 ... A0AAT8XUE4 38874074
    874262 8rpj:F (1.9) BS03 FAD N/A GO:0000287 ... A0AAT8XUE4 38874074
    874263 8rpj:F (1.9) BS04 MG N/A GO:0000287 ... A0AAT8XUE4 38874074
    874264 8rpk:A (2.615) BS01 MG N/A GO:0003987 ... A0ACD6BAL5 39019872
    874265 8rpk:B (2.615) BS01 MG N/A GO:0003987 ... A0ACD6BAL5 39019872
    874266 8rpk:C (2.615) BS01 MG N/A GO:0003987 ... A0ACD6BAL5 39019872
    874267 8rpk:D (2.615) BS01 MG N/A GO:0003987 ... A0ACD6BAL5 39019872
    874268 8rpl:A (2.37) BS01 6R9 N/A GO:0003987 ... A0ACD6BAL5 39019872
    874269 8rpl:A (2.37) BS02 MG N/A GO:0003987 ... A0ACD6BAL5 39019872
    874270 8rpl:B (2.37) BS01 6R9 N/A GO:0003987 ... A0ACD6BAL5 39019872
    874271 8rpl:B (2.37) BS02 MG N/A GO:0003987 ... A0ACD6BAL5 39019872
    874272 8rpl:C (2.37) BS01 6R9 N/A GO:0003987 ... A0ACD6BAL5 39019872
    874273 8rpl:C (2.37) BS02 MG N/A GO:0003987 ... A0ACD6BAL5 39019872
    874274 8rpl:D (2.37) BS01 6R9 N/A GO:0003987 ... A0ACD6BAL5 39019872
    874275 8rpo:A (1.791) BS01 A1H2C N/A GO:0042981 ... Q16548 38894895
    874276 8rpr:A (2.14) BS01 COI N/A GO:0003824 ... R9UTR3 38887142
    874277 8rpr:A (2.14) BS02 MG N/A GO:0003824 ... R9UTR3 38887142
    874278 8rpr:A (2.14) BS03 MG N/A GO:0003824 ... R9UTR3 38887142
    874279 8rpr:A (2.14) BS04 ZN N/A GO:0003824 ... R9UTR3 38887142
    874280 8rps:A (1.75) BS01 5HU N/A GO:0009159 ... O43598 38350003
    874281 8rps:B (1.75) BS01 5HU N/A GO:0009159 ... O43598 38350003
    874282 8rps:C (1.75) BS01 5HU N/A GO:0009159 ... O43598 38350003
    874283 8rpx:A (1.81) BS01 dna N/A N/A I4EG67 39041409
    874284 8rpx:A (1.81) BS02 dna N/A N/A I4EG67 39041409
    874285 8rpx:A (1.81) BS03 CA N/A N/A I4EG67 39041409
    874286 8rpx:B (1.81) BS01 dna N/A N/A I4EG67 39041409
    874287 8rpx:B (1.81) BS02 dna N/A N/A I4EG67 39041409
    874288 8rpx:B (1.81) BS03 dna N/A N/A I4EG67 39041409
    874289 8rpx:B (1.81) BS04 CA N/A N/A I4EG67 39041409
    874290 8rpx:C (1.81) BS01 dna N/A N/A I4EG67 39041409
    874291 8rpx:C (1.81) BS02 dna N/A N/A I4EG67 39041409
    874292 8rpx:C (1.81) BS03 CA N/A N/A I4EG67 39041409
    874293 8rpx:D (1.81) BS01 dna N/A N/A I4EG67 39041409
    874294 8rpx:D (1.81) BS02 dna N/A N/A I4EG67 39041409
    874295 8rpx:D (1.81) BS03 dna N/A N/A I4EG67 39041409
    874296 8rpx:D (1.81) BS04 CA N/A N/A I4EG67 39041409
    874297 8rpx:E (1.81) BS01 dna N/A N/A I4EG67 39041409
    874298 8rpx:E (1.81) BS02 dna N/A N/A I4EG67 39041409
    874299 8rpx:E (1.81) BS03 CA N/A N/A I4EG67 39041409
    874300 8rpy:0 (2.64) BS01 rna ? GO:0000027 ... P0A7N4 38730238
    874301 8rpy:1 (2.64) BS01 rna ? GO:0000027 ... P0A7N9 38730238
    874302 8rpy:2 (2.64) BS01 rna ? GO:0002181 ... P0A7P5 38730238
    874303 8rpy:3 (2.64) BS01 rna ? GO:0002181 ... P0A7Q1 38730238
    874304 8rpy:4 (2.64) BS01 rna ? GO:0002181 ... P0A7Q6 38730238
    874305 8rpy:6 (2.64) BS01 rna ? GO:0002181 ... P0A7M9 38730238
    874306 8rpy:C (2.64) BS01 rna ? GO:0000027 ... P60422 38730238
    874307 8rpy:D (2.64) BS01 rna ? GO:0000027 ... P60438 38730238
    874308 8rpy:E (2.64) BS01 rna ? GO:0001070 ... P60723 38730238
    874309 8rpy:E (2.64) BS02 peptide ? GO:0001070 ... P60723 38730238
    874310 8rpy:F (2.64) BS01 rna ? GO:0000027 ... P62399 38730238
    874311 8rpy:F (2.64) BS02 rna ? GO:0000027 ... P62399 38730238
    874312 8rpy:G (2.64) BS01 rna ? GO:0000027 ... P0AG55 38730238
    874313 8rpy:H (2.64) BS01 rna ? GO:0002181 ... P0A7R1 38730238
    874314 8rpy:J (2.64) BS01 rna ? GO:0002181 ... P0AA10 38730238
    874315 8rpy:K (2.64) BS01 rna ? GO:0002181 ... P0ADY3 38730238
    874316 8rpy:L (2.64) BS01 rna ? GO:0002181 ... P02413 38730238
    874317 8rpy:M (2.64) BS01 rna ? GO:0000027 ... P0ADY7 38730238
    874318 8rpy:M (2.64) BS02 rna ? GO:0000027 ... P0ADY7 38730238
    874319 8rpy:N (2.64) BS01 rna ? GO:0000027 ... P0AG44 38730238
    874320 8rpy:O (2.64) BS01 rna ? GO:0002181 ... P0C018 38730238
    874321 8rpy:O (2.64) BS02 rna ? GO:0002181 ... P0C018 38730238
    874322 8rpy:P (2.64) BS01 rna ? GO:0000027 ... P0A7K6 38730238
    874323 8rpy:Q (2.64) BS01 rna ? GO:0000027 ... P0A7L3 38730238
    874324 8rpy:R (2.64) BS01 rna ? GO:0002181 ... P0AG48 38730238
    874325 8rpy:S (2.64) BS01 rna ? GO:0002181 ... P61175 38730238
    874326 8rpy:T (2.64) BS01 rna ? GO:0000027 ... P0ADZ0 38730238
    874327 8rpy:U (2.64) BS01 rna ? GO:0000027 ... P60624 38730238
    874328 8rpy:V (2.64) BS01 rna ? GO:0000027 ... P68919 38730238
    874329 8rpy:V (2.64) BS02 rna ? GO:0000027 ... P68919 38730238
    874330 8rpy:W (2.64) BS01 rna ? GO:0003735 ... P0A7L8 38730238
    874331 8rpy:W (2.64) BS02 rna ? GO:0003735 ... P0A7L8 38730238
    874332 8rpy:X (2.64) BS01 rna ? GO:0000027 ... P0A7M2 38730238
    874333 8rpy:Y (2.64) BS01 rna ? GO:0000027 ... P0A7M6 38730238
    874334 8rpy:Z (2.64) BS01 rna ? GO:0000027 ... P0AG51 38730238
    874335 8rpz:0 (2.44) BS01 rna ? GO:0000027 ... P0A7N4 38730238
    874336 8rpz:1 (2.44) BS01 rna ? GO:0000027 ... P0A7N9 38730238
    874337 8rpz:2 (2.44) BS01 rna ? GO:0002181 ... P0A7P5 38730238
    874338 8rpz:3 (2.44) BS01 rna ? GO:0002181 ... P0A7Q1 38730238
    874339 8rpz:4 (2.44) BS01 rna ? GO:0002181 ... P0A7Q6 38730238
    874340 8rpz:6 (2.44) BS01 rna ? GO:0002181 ... P0A7M9 38730238
    874341 8rpz:C (2.44) BS01 rna ? GO:0000027 ... P60422 38730238
    874342 8rpz:D (2.44) BS01 rna ? GO:0000027 ... P60438 38730238
    874343 8rpz:E (2.44) BS01 rna ? GO:0001070 ... P60723 38730238
    874344 8rpz:E (2.44) BS02 peptide ? GO:0001070 ... P60723 38730238
    874345 8rpz:F (2.44) BS01 rna ? GO:0000027 ... P62399 38730238
    874346 8rpz:F (2.44) BS02 rna ? GO:0000027 ... P62399 38730238
    874347 8rpz:G (2.44) BS01 rna ? GO:0000027 ... P0AG55 38730238
    874348 8rpz:H (2.44) BS01 rna ? GO:0002181 ... P0A7R1 38730238
    874349 8rpz:J (2.44) BS01 rna ? GO:0002181 ... P0AA10 38730238
    874350 8rpz:K (2.44) BS01 rna ? GO:0002181 ... P0ADY3 38730238
    874351 8rpz:L (2.44) BS01 rna ? GO:0002181 ... P02413 38730238
    874352 8rpz:M (2.44) BS01 rna ? GO:0000027 ... P0ADY7 38730238
    874353 8rpz:M (2.44) BS02 rna ? GO:0000027 ... P0ADY7 38730238
    874354 8rpz:N (2.44) BS01 rna ? GO:0000027 ... P0AG44 38730238
    874355 8rpz:O (2.44) BS01 rna ? GO:0002181 ... P0C018 38730238
    874356 8rpz:O (2.44) BS02 rna ? GO:0002181 ... P0C018 38730238
    874357 8rpz:P (2.44) BS01 rna ? GO:0000027 ... P0A7K6 38730238
    874358 8rpz:Q (2.44) BS01 rna ? GO:0000027 ... P0A7L3 38730238
    874359 8rpz:R (2.44) BS01 rna ? GO:0002181 ... P0AG48 38730238
    874360 8rpz:S (2.44) BS01 rna ? GO:0002181 ... P61175 38730238
    874361 8rpz:T (2.44) BS01 rna ? GO:0000027 ... P0ADZ0 38730238
    874362 8rpz:T (2.44) BS02 peptide ? GO:0000027 ... P0ADZ0 38730238
    874363 8rpz:U (2.44) BS01 rna ? GO:0000027 ... P60624 38730238
    874364 8rpz:V (2.44) BS01 rna ? GO:0000027 ... P68919 38730238
    874365 8rpz:W (2.44) BS01 rna ? GO:0003735 ... P0A7L8 38730238
    874366 8rpz:W (2.44) BS02 rna ? GO:0003735 ... P0A7L8 38730238
    874367 8rpz:X (2.44) BS01 rna ? GO:0000027 ... P0A7M2 38730238
    874368 8rpz:Y (2.44) BS01 rna ? GO:0000027 ... P0A7M6 38730238
    874369 8rpz:Z (2.44) BS01 rna ? GO:0000027 ... P0AG51 38730238
    874370 8rq0:0 (2.44) BS01 rna ? GO:0000027 ... P0A7N4 38730238
    874371 8rq0:1 (2.44) BS01 rna ? GO:0000027 ... P0A7N9 38730238
    874372 8rq0:2 (2.44) BS01 rna ? GO:0002181 ... P0A7P5 38730238
    874373 8rq0:3 (2.44) BS01 rna ? GO:0002181 ... P0A7Q1 38730238
    874374 8rq0:4 (2.44) BS01 rna ? GO:0002181 ... P0A7Q6 38730238
    874375 8rq0:6 (2.44) BS01 rna ? GO:0002181 ... P0A7M9 38730238
    874376 8rq0:C (2.44) BS01 rna ? GO:0000027 ... P60422 38730238
    874377 8rq0:D (2.44) BS01 rna ? GO:0000027 ... P60438 38730238
    874378 8rq0:E (2.44) BS01 rna ? GO:0001070 ... P60723 38730238
    874379 8rq0:E (2.44) BS02 peptide ? GO:0001070 ... P60723 38730238
    874380 8rq0:F (2.44) BS01 rna ? GO:0000027 ... P62399 38730238
    874381 8rq0:F (2.44) BS02 rna ? GO:0000027 ... P62399 38730238
    874382 8rq0:G (2.44) BS01 rna ? GO:0000027 ... P0AG55 38730238
    874383 8rq0:H (2.44) BS01 rna ? GO:0002181 ... P0A7R1 38730238
    874384 8rq0:J (2.44) BS01 rna ? GO:0002181 ... P0AA10 38730238
    874385 8rq0:K (2.44) BS01 rna ? GO:0002181 ... P0ADY3 38730238
    874386 8rq0:L (2.44) BS01 rna ? GO:0002181 ... P02413 38730238
    874387 8rq0:M (2.44) BS01 rna ? GO:0000027 ... P0ADY7 38730238
    874388 8rq0:M (2.44) BS02 rna ? GO:0000027 ... P0ADY7 38730238
    874389 8rq0:N (2.44) BS01 rna ? GO:0000027 ... P0AG44 38730238
    874390 8rq0:O (2.44) BS01 rna ? GO:0002181 ... P0C018 38730238
    874391 8rq0:O (2.44) BS02 rna ? GO:0002181 ... P0C018 38730238
    874392 8rq0:P (2.44) BS01 rna ? GO:0000027 ... P0A7K6 38730238
    874393 8rq0:Q (2.44) BS01 rna ? GO:0000027 ... P0A7L3 38730238
    874394 8rq0:R (2.44) BS01 rna ? GO:0002181 ... P0AG48 38730238
    874395 8rq0:S (2.44) BS01 rna ? GO:0002181 ... P61175 38730238
    874396 8rq0:S (2.44) BS02 peptide ? GO:0002181 ... P61175 38730238
    874397 8rq0:T (2.44) BS01 rna ? GO:0000027 ... P0ADZ0 38730238
    874398 8rq0:T (2.44) BS02 peptide ? GO:0000027 ... P0ADZ0 38730238
    874399 8rq0:U (2.44) BS01 rna ? GO:0000027 ... P60624 38730238
    874400 8rq0:V (2.44) BS01 rna ? GO:0000027 ... P68919 38730238

    Reference:
  • Chengxin Zhang, Xi Zhang, Lydia Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).