SEQ2FUN

BioLiP
Download all results in tab-seperated text for 942758 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
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  • Hover over EC number to view the full name of enzymatic activity.
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    # PDB
    (Resolution Å)
    Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    874601 8sn7:E (3.7) BS02 dna ? GO:0000786 ... P68431 38242129
    874602 8sn7:F (3.7) BS01 dna ? GO:0000781 ... P62805 38242129
    874603 8sn7:F (3.7) BS02 dna ? GO:0000781 ... P62805 38242129
    874604 8sn7:G (3.7) BS01 dna ? GO:0000786 ... P04908 38242129
    874605 8sn7:G (3.7) BS02 dna ? GO:0000786 ... P04908 38242129
    874606 8sn7:H (3.7) BS01 dna ? GO:0000786 ... P06899 38242129
    874607 8sn7:H (3.7) BS02 dna ? GO:0000786 ... P06899 38242129
    874608 8sn7:K (3.7) BS01 ZN 2.3.2.27 N/A Q8IYW5 38242129
    874609 8sn7:K (3.7) BS02 ZN 2.3.2.27 N/A Q8IYW5 38242129
    874610 8sn8:A (3.7) BS01 dna ? GO:0000786 ... P68431 38242129
    874611 8sn8:A (3.7) BS02 dna ? GO:0000786 ... P68431 38242129
    874612 8sn8:B (3.7) BS01 dna ? GO:0000781 ... P62805 38242129
    874613 8sn8:B (3.7) BS02 dna ? GO:0000781 ... P62805 38242129
    874614 8sn8:C (3.7) BS01 dna ? GO:0000786 ... P04908 38242129
    874615 8sn8:C (3.7) BS02 dna ? GO:0000786 ... P04908 38242129
    874616 8sn8:D (3.7) BS01 dna ? GO:0000786 ... P06899 38242129
    874617 8sn8:E (3.7) BS01 dna ? GO:0000786 ... P68431 38242129
    874618 8sn8:E (3.7) BS02 dna ? GO:0000786 ... P68431 38242129
    874619 8sn8:F (3.7) BS01 dna ? GO:0000781 ... P62805 38242129
    874620 8sn8:G (3.7) BS01 dna ? GO:0000786 ... P04908 38242129
    874621 8sn8:G (3.7) BS02 dna ? GO:0000786 ... P04908 38242129
    874622 8sn8:H (3.7) BS01 dna ? GO:0000786 ... P06899 38242129
    874623 8sn8:H (3.7) BS02 dna ? GO:0000786 ... P06899 38242129
    874624 8sn8:K (3.7) BS01 ZN 2.3.2.27 N/A Q8IYW5 38242129
    874625 8sn8:K (3.7) BS02 ZN 2.3.2.27 N/A Q8IYW5 38242129
    874626 8sn9:A (3.9) BS01 dna ? GO:0000786 ... P68431 38242129
    874627 8sn9:A (3.9) BS02 dna ? GO:0000786 ... P68431 38242129
    874628 8sn9:B (3.9) BS01 dna ? GO:0000781 ... P62805 38242129
    874629 8sn9:B (3.9) BS02 dna ? GO:0000781 ... P62805 38242129
    874630 8sn9:C (3.9) BS01 dna ? GO:0000786 ... P04908 38242129
    874631 8sn9:C (3.9) BS02 dna ? GO:0000786 ... P04908 38242129
    874632 8sn9:D (3.9) BS01 dna ? GO:0000786 ... P06899 38242129
    874633 8sn9:D (3.9) BS02 dna ? GO:0000786 ... P06899 38242129
    874634 8sn9:E (3.9) BS01 dna ? GO:0000786 ... P68431 38242129
    874635 8sn9:E (3.9) BS02 dna ? GO:0000786 ... P68431 38242129
    874636 8sn9:F (3.9) BS01 dna ? GO:0000781 ... P62805 38242129
    874637 8sn9:F (3.9) BS02 dna ? GO:0000781 ... P62805 38242129
    874638 8sn9:G (3.9) BS01 dna ? GO:0000786 ... P04908 38242129
    874639 8sn9:G (3.9) BS02 dna ? GO:0000786 ... P04908 38242129
    874640 8sn9:H (3.9) BS01 dna ? GO:0000786 ... P06899 38242129
    874641 8sn9:H (3.9) BS02 dna ? GO:0000786 ... P06899 38242129
    874642 8sn9:K (3.9) BS01 ZN 2.3.2.27 N/A Q8IYW5 38242129
    874643 8sn9:K (3.9) BS02 ZN 2.3.2.27 N/A Q8IYW5 38242129
    874644 8sna:A (4.0) BS01 dna ? GO:0000786 ... P68431 38242129
    874645 8sna:A (4.0) BS02 dna ? GO:0000786 ... P68431 38242129
    874646 8sna:B (4.0) BS01 dna ? GO:0000781 ... P62805 38242129
    874647 8sna:B (4.0) BS02 dna ? GO:0000781 ... P62805 38242129
    874648 8sna:C (4.0) BS01 dna ? GO:0000786 ... P04908 38242129
    874649 8sna:C (4.0) BS02 dna ? GO:0000786 ... P04908 38242129
    874650 8sna:D (4.0) BS01 dna ? GO:0000786 ... P06899 38242129
    874651 8sna:D (4.0) BS02 dna ? GO:0000786 ... P06899 38242129
    874652 8sna:E (4.0) BS01 dna ? GO:0000786 ... P68431 38242129
    874653 8sna:E (4.0) BS02 dna ? GO:0000786 ... P68431 38242129
    874654 8sna:F (4.0) BS01 dna ? GO:0000781 ... P62805 38242129
    874655 8sna:F (4.0) BS02 dna ? GO:0000781 ... P62805 38242129
    874656 8sna:G (4.0) BS01 dna ? GO:0000786 ... P04908 38242129
    874657 8sna:G (4.0) BS02 dna ? GO:0000786 ... P04908 38242129
    874658 8sna:H (4.0) BS01 dna ? GO:0000786 ... P06899 38242129
    874659 8sna:H (4.0) BS02 dna ? GO:0000786 ... P06899 38242129
    874660 8sna:K (4.0) BS01 ZN 2.3.2.27 N/A Q8IYW5 38242129
    874661 8sna:K (4.0) BS02 ZN 2.3.2.27 N/A Q8IYW5 38242129
    874662 8snb:1y (3.3) BS01 peptide ? GO:0005815 ... A0A7M7PGM9 37327785
    874663 8snb:2R (3.3) BS01 peptide ? GO:0005634 ... A0A7M7REB1 37327785
    874664 8snb:5F (3.3) BS01 peptide ? GO:0005856 ... A0A7M7RI41 37327785
    874665 8snb:5G (3.3) BS01 peptide ? GO:0005856 ... A0A7M7RI41 37327785
    874666 8snb:5H (3.3) BS01 peptide ? GO:0005856 ... A0A7M7RI41 37327785
    874667 8snb:5J (3.3) BS01 peptide ? GO:0005856 ... A0A7M7RI41 37327785
    874668 8snb:5N (3.3) BS01 peptide ? GO:0005856 ... A0A7M7RI41 37327785
    874669 8snb:5N (3.3) BS02 peptide ? GO:0005856 ... A0A7M7RI41 37327785
    874670 8snb:6M (3.3) BS01 peptide ? GO:0019902 ... A0A7M7P181 37327785
    874671 8snb:6R (3.3) BS01 peptide ? N/A A0A7M7THB5 37327785
    874672 8snb:6R (3.3) BS02 peptide ? N/A A0A7M7THB5 37327785
    874673 8snb:7U (3.3) BS01 peptide N/A N/A N/A 37327785
    874674 8snb:8F (3.3) BS01 peptide ? GO:0005737 ... Q9U0E3 37327785
    874675 8snb:8K (3.3) BS01 peptide ? GO:0005737 ... A0A7M7SXG5 37327785
    874676 8snb:8S (3.3) BS01 peptide ? GO:0005737 ... Q26623 37327785
    874677 8snb:AA (3.3) BS01 GTP ? GO:0000226 ... A0A7M7RGW6 37327785
    874678 8snb:AB (3.3) BS01 GTP ? GO:0000226 ... A0A7M7RGW6 37327785
    874679 8snb:AC (3.3) BS01 GTP ? GO:0003924 ... A0A7M7NS69 37327785
    874680 8snb:AC (3.3) BS02 GDP ? GO:0003924 ... A0A7M7NS69 37327785
    874681 8snb:AD (3.3) BS01 GDP ? GO:0003924 ... A0A7M7NS69 37327785
    874682 8snb:AE (3.3) BS01 GTP ? GO:0000226 ... A0A7M7RGW6 37327785
    874683 8snb:AF (3.3) BS01 GDP ? GO:0003924 ... A0A7M7NS69 37327785
    874684 8snb:AG (3.3) BS01 MG ? GO:0000226 ... A0A7M7RGW6 37327785
    874685 8snb:AG (3.3) BS02 GTP ? GO:0000226 ... A0A7M7RGW6 37327785
    874686 8snb:AH (3.3) BS01 GDP ? GO:0003924 ... A0A7M7NS69 37327785
    874687 8snb:AH (3.3) BS02 GTP ? GO:0003924 ... A0A7M7NS69 37327785
    874688 8snb:AI (3.3) BS01 GTP ? GO:0000226 ... A0A7M7RGW6 37327785
    874689 8snb:AJ (3.3) BS01 GDP ? GO:0003924 ... A0A7M7NS69 37327785
    874690 8snb:AK (3.3) BS01 GTP ? GO:0000226 ... A0A7M7RGW6 37327785
    874691 8snb:AL (3.3) BS01 GDP ? GO:0003924 ... A0A7M7NS69 37327785
    874692 8snb:AM (3.3) BS01 GTP ? GO:0000226 ... A0A7M7RGW6 37327785
    874693 8snb:BA (3.3) BS01 GTP ? GO:0000226 ... A0A7M7RGW6 37327785
    874694 8snb:BB (3.3) BS01 GTP ? GO:0000226 ... A0A7M7RGW6 37327785
    874695 8snb:BC (3.3) BS01 GDP ? GO:0003924 ... A0A7M7NS69 37327785
    874696 8snb:BD (3.3) BS01 GDP ? GO:0003924 ... A0A7M7NS69 37327785
    874697 8snb:BE (3.3) BS01 GTP ? GO:0000226 ... A0A7M7RGW6 37327785
    874698 8snb:BF (3.3) BS01 GDP ? GO:0003924 ... A0A7M7NS69 37327785
    874699 8snb:BG (3.3) BS01 GTP ? GO:0000226 ... A0A7M7RGW6 37327785
    874700 8snb:BH (3.3) BS01 GDP ? GO:0003924 ... A0A7M7NS69 37327785
    874701 8snb:BI (3.3) BS01 GTP ? GO:0000226 ... A0A7M7RGW6 37327785
    874702 8snb:BI (3.3) BS02 MG ? GO:0000226 ... A0A7M7RGW6 37327785
    874703 8snb:BJ (3.3) BS01 GDP ? GO:0003924 ... A0A7M7NS69 37327785
    874704 8snb:BK (3.3) BS01 GTP ? GO:0000226 ... A0A7M7RGW6 37327785
    874705 8snb:BK (3.3) BS02 MG ? GO:0000226 ... A0A7M7RGW6 37327785
    874706 8snb:BL (3.3) BS01 GDP ? GO:0003924 ... A0A7M7NS69 37327785
    874707 8snb:BM (3.3) BS01 GTP ? GO:0000226 ... A0A7M7RGW6 37327785
    874708 8snb:CA (3.3) BS01 GTP ? GO:0000226 ... A0A7M7RGW6 37327785
    874709 8snb:CA (3.3) BS02 MG ? GO:0000226 ... A0A7M7RGW6 37327785
    874710 8snb:CB (3.3) BS01 GTP ? GO:0000226 ... A0A7M7RGW6 37327785
    874711 8snb:CB (3.3) BS02 MG ? GO:0000226 ... A0A7M7RGW6 37327785
    874712 8snb:CC (3.3) BS01 GTP ? GO:0003924 ... A0A7M7NS69 37327785
    874713 8snb:CC (3.3) BS02 GDP ? GO:0003924 ... A0A7M7NS69 37327785
    874714 8snb:CD (3.3) BS01 GDP ? GO:0003924 ... A0A7M7NS69 37327785
    874715 8snb:CE (3.3) BS01 GTP ? GO:0000226 ... A0A7M7RGW6 37327785
    874716 8snb:CF (3.3) BS01 GDP ? GO:0003924 ... A0A7M7NS69 37327785
    874717 8snb:CF (3.3) BS02 GTP ? GO:0003924 ... A0A7M7NS69 37327785
    874718 8snb:CG (3.3) BS01 GTP ? GO:0000226 ... A0A7M7RGW6 37327785
    874719 8snb:CH (3.3) BS01 GDP ? GO:0003924 ... A0A7M7NS69 37327785
    874720 8snb:CI (3.3) BS01 GTP ? GO:0000226 ... A0A7M7RGW6 37327785
    874721 8snb:CI (3.3) BS02 MG ? GO:0000226 ... A0A7M7RGW6 37327785
    874722 8snb:CJ (3.3) BS01 GDP ? GO:0003924 ... A0A7M7NS69 37327785
    874723 8snb:CK (3.3) BS01 GTP ? GO:0000226 ... A0A7M7RGW6 37327785
    874724 8snb:CL (3.3) BS01 GDP ? GO:0003924 ... A0A7M7NS69 37327785
    874725 8snb:CM (3.3) BS01 GTP ? GO:0000226 ... A0A7M7RGW6 37327785
    874726 8snb:DA (3.3) BS01 GTP ? GO:0000226 ... A0A7M7RGW6 37327785
    874727 8snb:DB (3.3) BS01 GTP ? GO:0000226 ... A0A7M7RGW6 37327785
    874728 8snb:DB (3.3) BS02 MG ? GO:0000226 ... A0A7M7RGW6 37327785
    874729 8snb:DC (3.3) BS01 GDP ? GO:0003924 ... A0A7M7NS69 37327785
    874730 8snb:DD (3.3) BS01 GDP ? GO:0003924 ... A0A7M7NS69 37327785
    874731 8snb:DD (3.3) BS02 GTP ? GO:0003924 ... A0A7M7NS69 37327785
    874732 8snb:DE (3.3) BS01 GTP ? GO:0000226 ... A0A7M7RGW6 37327785
    874733 8snb:DF (3.3) BS01 GDP ? GO:0003924 ... A0A7M7NS69 37327785
    874734 8snb:DG (3.3) BS01 GTP ? GO:0000226 ... A0A7M7RGW6 37327785
    874735 8snb:DH (3.3) BS01 GDP ? GO:0003924 ... A0A7M7NS69 37327785
    874736 8snb:DH (3.3) BS02 GTP ? GO:0003924 ... A0A7M7NS69 37327785
    874737 8snb:DI (3.3) BS01 GTP ? GO:0000226 ... A0A7M7RGW6 37327785
    874738 8snb:DJ (3.3) BS01 GDP ? GO:0003924 ... A0A7M7NS69 37327785
    874739 8snb:DJ (3.3) BS02 GTP ? GO:0003924 ... A0A7M7NS69 37327785
    874740 8snb:DK (3.3) BS01 GTP ? GO:0000226 ... A0A7M7RGW6 37327785
    874741 8snb:DL (3.3) BS01 GTP ? GO:0003924 ... A0A7M7NS69 37327785
    874742 8snb:DL (3.3) BS02 GDP ? GO:0003924 ... A0A7M7NS69 37327785
    874743 8snb:DM (3.3) BS01 GTP ? GO:0000226 ... A0A7M7RGW6 37327785
    874744 8snb:EA (3.3) BS01 GTP ? GO:0000226 ... A0A7M7RGW6 37327785
    874745 8snb:EA (3.3) BS02 MG ? GO:0000226 ... A0A7M7RGW6 37327785
    874746 8snb:EB (3.3) BS01 GDP ? GO:0003924 ... A0A7M7NS69 37327785
    874747 8snb:EB (3.3) BS02 GTP ? GO:0003924 ... A0A7M7NS69 37327785
    874748 8snb:EC (3.3) BS01 GTP ? GO:0000226 ... A0A7M7RGW6 37327785
    874749 8snb:ED (3.3) BS01 GDP ? GO:0003924 ... A0A7M7NS69 37327785
    874750 8snb:EE (3.3) BS01 GTP ? GO:0000226 ... A0A7M7RGW6 37327785
    874751 8snb:EF (3.3) BS01 GDP ? GO:0003924 ... A0A7M7NS69 37327785
    874752 8snb:EG (3.3) BS01 GTP ? GO:0000226 ... A0A7M7RGW6 37327785
    874753 8snb:EH (3.3) BS01 GDP ? GO:0003924 ... A0A7M7NS69 37327785
    874754 8snb:EI (3.3) BS01 GTP ? GO:0000226 ... A0A7M7RGW6 37327785
    874755 8snb:EJ (3.3) BS01 GDP ? GO:0003924 ... A0A7M7NS69 37327785
    874756 8snb:EK (3.3) BS01 GTP ? GO:0000226 ... A0A7M7RGW6 37327785
    874757 8snb:EL (3.3) BS01 GDP ? GO:0003924 ... A0A7M7NS69 37327785
    874758 8snb:EM (3.3) BS01 GDP ? GO:0003924 ... A0A7M7NS69 37327785
    874759 8snb:FA (3.3) BS01 GTP ? GO:0000226 ... A0A7M7RGW6 37327785
    874760 8snb:FB (3.3) BS01 GTP ? GO:0000226 ... A0A7M7RGW6 37327785
    874761 8snb:FC (3.3) BS01 GDP ? GO:0003924 ... A0A7M7NS69 37327785
    874762 8snb:FD (3.3) BS01 GDP ? GO:0003924 ... A0A7M7NS69 37327785
    874763 8snb:FE (3.3) BS01 GTP ? GO:0000226 ... A0A7M7RGW6 37327785
    874764 8snb:FF (3.3) BS01 GDP ? GO:0003924 ... A0A7M7NS69 37327785
    874765 8snb:FG (3.3) BS01 GTP ? GO:0000226 ... A0A7M7RGW6 37327785
    874766 8snb:FG (3.3) BS02 MG ? GO:0000226 ... A0A7M7RGW6 37327785
    874767 8snb:FH (3.3) BS01 GDP ? GO:0003924 ... A0A7M7NS69 37327785
    874768 8snb:FI (3.3) BS01 GTP ? GO:0000226 ... A0A7M7RGW6 37327785
    874769 8snb:FI (3.3) BS02 MG ? GO:0000226 ... A0A7M7RGW6 37327785
    874770 8snb:FJ (3.3) BS01 GDP ? GO:0003924 ... A0A7M7NS69 37327785
    874771 8snb:FK (3.3) BS01 GTP ? GO:0000226 ... A0A7M7RGW6 37327785
    874772 8snb:FL (3.3) BS01 GDP ? GO:0003924 ... A0A7M7NS69 37327785
    874773 8snb:FM (3.3) BS01 GDP ? GO:0003924 ... A0A7M7NS69 37327785
    874774 8snb:GA (3.3) BS01 GTP ? GO:0000226 ... A0A7M7RGW6 37327785
    874775 8snb:GA (3.3) BS02 MG ? GO:0000226 ... A0A7M7RGW6 37327785
    874776 8snb:GB (3.3) BS01 GTP ? GO:0000226 ... A0A7M7RGW6 37327785
    874777 8snb:GC (3.3) BS01 GDP ? GO:0003924 ... A0A7M7NS69 37327785
    874778 8snb:GD (3.3) BS01 GDP ? GO:0003924 ... A0A7M7NS69 37327785
    874779 8snb:GD (3.3) BS02 GTP ? GO:0003924 ... A0A7M7NS69 37327785
    874780 8snb:GE (3.3) BS01 GTP ? GO:0000226 ... A0A7M7RGW6 37327785
    874781 8snb:GF (3.3) BS01 GDP ? GO:0003924 ... A0A7M7NS69 37327785
    874782 8snb:GG (3.3) BS01 GTP ? GO:0000226 ... A0A7M7RGW6 37327785
    874783 8snb:GH (3.3) BS01 GDP ? GO:0003924 ... A0A7M7NS69 37327785
    874784 8snb:GI (3.3) BS01 GTP ? GO:0000226 ... A0A7M7RGW6 37327785
    874785 8snb:GJ (3.3) BS01 GDP ? GO:0003924 ... A0A7M7NS69 37327785
    874786 8snb:GK (3.3) BS01 GTP ? GO:0000226 ... A0A7M7RGW6 37327785
    874787 8snb:GL (3.3) BS01 GDP ? GO:0003924 ... A0A7M7NS69 37327785
    874788 8snb:GM (3.3) BS01 GDP ? GO:0003924 ... A0A7M7NS69 37327785
    874789 8snb:HA (3.3) BS01 GTP ? GO:0000226 ... A0A7M7RGW6 37327785
    874790 8snb:HA (3.3) BS02 MG ? GO:0000226 ... A0A7M7RGW6 37327785
    874791 8snb:HB (3.3) BS01 GTP ? GO:0000226 ... A0A7M7RGW6 37327785
    874792 8snb:HC (3.3) BS01 GDP ? GO:0003924 ... A0A7M7NS69 37327785
    874793 8snb:HD (3.3) BS01 GDP ? GO:0003924 ... A0A7M7NS69 37327785
    874794 8snb:HE (3.3) BS01 GTP ? GO:0000226 ... A0A7M7RGW6 37327785
    874795 8snb:HF (3.3) BS01 GDP ? GO:0003924 ... A0A7M7NS69 37327785
    874796 8snb:HG (3.3) BS01 GTP ? GO:0000226 ... A0A7M7RGW6 37327785
    874797 8snb:HG (3.3) BS02 MG ? GO:0000226 ... A0A7M7RGW6 37327785
    874798 8snb:HH (3.3) BS01 GDP ? GO:0003924 ... A0A7M7NS69 37327785
    874799 8snb:HI (3.3) BS01 GTP ? GO:0000226 ... A0A7M7RGW6 37327785
    874800 8snb:HJ (3.3) BS01 GDP ? GO:0003924 ... A0A7M7NS69 37327785

    Reference:
  • Chengxin Zhang, Xi Zhang, Lydia Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).