SEQ2FUN

BioLiP
Download all results in tab-seperated text for 1072681 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.
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    # PDB
    (Resolution Å)
    Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    875001 8rt5:N (2.69) BS02 peptide N/A N/A O50336 38886579
    875002 8rt5:Q (2.69) BS01 peptide N/A N/A O50336 38886579
    875003 8rt5:Q (2.69) BS02 peptide N/A N/A O50336 38886579
    875004 8rt5:T (2.69) BS01 peptide N/A N/A O50336 38886579
    875005 8rt5:T (2.69) BS02 peptide N/A N/A O50336 38886579
    875006 8rt5:W (2.69) BS01 peptide N/A N/A O50336 38886579
    875007 8rt5:W (2.69) BS02 peptide N/A N/A O50336 38886579
    875008 8rt5:Z (2.69) BS01 peptide N/A N/A O50336 38886579
    875009 8rt5:Z (2.69) BS02 peptide N/A N/A O50336 38886579
    875010 8rt5:c (2.69) BS01 peptide N/A N/A O50336 38886579
    875011 8rt5:c (2.69) BS02 peptide N/A N/A O50336 38886579
    875012 8rt5:f (2.69) BS01 peptide N/A N/A O50336 38886579
    875013 8rt5:f (2.69) BS02 peptide N/A N/A O50336 38886579
    875014 8rt5:i (2.69) BS01 peptide N/A N/A O50336 38886579
    875015 8rt5:i (2.69) BS02 peptide N/A N/A O50336 38886579
    875016 8rt5:l (2.69) BS01 peptide N/A N/A O50336 38886579
    875017 8rt5:l (2.69) BS02 peptide N/A N/A O50336 38886579
    875018 8rt5:o (2.69) BS01 peptide N/A N/A O50336 38886579
    875019 8rt5:o (2.69) BS02 peptide N/A N/A O50336 38886579
    875020 8rt5:v (2.69) BS01 peptide N/A N/A O50336 38886579
    875021 8rt5:v (2.69) BS02 peptide N/A N/A O50336 38886579
    875022 8rt5:z (2.69) BS01 peptide N/A N/A O50336 38886579
    875023 8rt5:z (2.69) BS02 peptide N/A N/A O50336 38886579
    875024 8rt6:A (3.18) BS01 peptide N/A GO:0005515 ... O50337 38886579
    875025 8rt6:B (3.18) BS01 peptide N/A N/A O50336 38886579
    875026 8rt6:B (3.18) BS02 peptide N/A N/A O50336 38886579
    875027 8rt6:D (3.18) BS01 peptide N/A GO:0005515 ... O50337 38886579
    875028 8rt6:E (3.18) BS01 peptide N/A N/A O50336 38886579
    875029 8rt6:H (3.18) BS01 peptide N/A N/A O50336 38886579
    875030 8rt6:J (3.18) BS01 peptide N/A GO:0005515 ... O50337 38886579
    875031 8rt6:K (3.18) BS01 peptide N/A N/A O50336 38886579
    875032 8rt6:N (3.18) BS01 peptide N/A N/A O50336 38886579
    875033 8rt6:P (3.18) BS01 peptide N/A GO:0005515 ... O50337 38886579
    875034 8rt6:Q (3.18) BS01 peptide N/A N/A O50336 38886579
    875035 8rt6:S (3.18) BS01 peptide N/A GO:0005515 ... O50337 38886579
    875036 8rt6:T (3.18) BS01 peptide N/A N/A O50336 38886579
    875037 8rt6:V (3.18) BS01 peptide N/A GO:0005515 ... O50337 38886579
    875038 8rt6:W (3.18) BS01 peptide N/A N/A O50336 38886579
    875039 8rt6:W (3.18) BS02 peptide N/A N/A O50336 38886579
    875040 8rt6:Y (3.18) BS01 peptide N/A GO:0005515 ... O50337 38886579
    875041 8rt6:Z (3.18) BS01 peptide N/A N/A O50336 38886579
    875042 8rt6:c (3.18) BS01 peptide N/A N/A O50336 38886579
    875043 8rt6:f (3.18) BS01 peptide N/A N/A O50336 38886579
    875044 8rt6:h (3.18) BS01 peptide N/A GO:0005515 ... O50337 38886579
    875045 8rt6:i (3.18) BS01 peptide N/A N/A O50336 38886579
    875046 8rt6:k (3.18) BS01 peptide N/A GO:0005515 ... O50337 38886579
    875047 8rt6:l (3.18) BS01 peptide N/A N/A O50336 38886579
    875048 8rt6:n (3.18) BS01 peptide N/A GO:0005515 ... O50337 38886579
    875049 8rt6:o (3.18) BS01 peptide N/A N/A O50336 38886579
    875050 8rt6:v (3.18) BS01 peptide N/A N/A O50336 38886579
    875051 8rt6:z (3.18) BS01 peptide N/A N/A O50336 38886579
    875052 8rt7:A (2.93) BS01 peptide N/A GO:0005515 ... O50337 38886579
    875053 8rt7:B (2.93) BS01 peptide N/A N/A O50336 38886579
    875054 8rt7:D (2.93) BS01 peptide N/A GO:0005515 ... O50337 38886579
    875055 8rt7:E (2.93) BS01 peptide N/A N/A O50336 38886579
    875056 8rt7:G (2.93) BS01 peptide N/A GO:0005515 ... O50337 38886579
    875057 8rt7:H (2.93) BS01 peptide N/A N/A O50336 38886579
    875058 8rt7:J (2.93) BS01 peptide N/A GO:0005515 ... O50337 38886579
    875059 8rt7:K (2.93) BS01 peptide N/A N/A O50336 38886579
    875060 8rt7:M (2.93) BS01 peptide N/A GO:0005515 ... O50337 38886579
    875061 8rt7:N (2.93) BS01 peptide N/A N/A O50336 38886579
    875062 8rt7:P (2.93) BS01 peptide N/A GO:0005515 ... O50337 38886579
    875063 8rt7:Q (2.93) BS01 peptide N/A N/A O50336 38886579
    875064 8rt7:S (2.93) BS01 peptide N/A GO:0005515 ... O50337 38886579
    875065 8rt7:T (2.93) BS01 peptide N/A N/A O50336 38886579
    875066 8rt7:V (2.93) BS01 peptide N/A GO:0005515 ... O50337 38886579
    875067 8rt7:W (2.93) BS01 peptide N/A N/A O50336 38886579
    875068 8rt7:W (2.93) BS02 peptide N/A N/A O50336 38886579
    875069 8rt7:Y (2.93) BS01 peptide N/A GO:0005515 ... O50337 38886579
    875070 8rt7:Z (2.93) BS01 peptide N/A N/A O50336 38886579
    875071 8rt7:b (2.93) BS01 peptide N/A GO:0005515 ... O50337 38886579
    875072 8rt7:c (2.93) BS01 peptide N/A N/A O50336 38886579
    875073 8rt7:e (2.93) BS01 peptide N/A GO:0005515 ... O50337 38886579
    875074 8rt7:f (2.93) BS01 peptide N/A N/A O50336 38886579
    875075 8rt7:h (2.93) BS01 peptide N/A GO:0005515 ... O50337 38886579
    875076 8rt7:i (2.93) BS01 peptide N/A N/A O50336 38886579
    875077 8rt7:k (2.93) BS01 peptide N/A GO:0005515 ... O50337 38886579
    875078 8rt7:l (2.93) BS01 peptide N/A N/A O50336 38886579
    875079 8rt7:n (2.93) BS01 peptide N/A GO:0005515 ... O50337 38886579
    875080 8rt7:o (2.93) BS01 peptide N/A N/A O50336 38886579
    875081 8rt7:o (2.93) BS02 peptide N/A N/A O50336 38886579
    875082 8rt7:v (2.93) BS01 peptide N/A N/A O50336 38886579
    875083 8rt7:z (2.93) BS01 peptide N/A N/A O50336 38886579
    875084 8rt8:A (3.05) BS01 peptide N/A GO:0005515 ... O50337 38886579
    875085 8rt8:B (3.05) BS01 peptide N/A N/A O50336 38886579
    875086 8rt8:D (3.05) BS01 peptide N/A GO:0005515 ... O50337 38886579
    875087 8rt8:E (3.05) BS01 peptide N/A N/A O50336 38886579
    875088 8rt8:E (3.05) BS02 peptide N/A N/A O50336 38886579
    875089 8rt8:G (3.05) BS01 peptide N/A GO:0005515 ... O50337 38886579
    875090 8rt8:H (3.05) BS01 peptide N/A N/A O50336 38886579
    875091 8rt8:J (3.05) BS01 peptide N/A GO:0005515 ... O50337 38886579
    875092 8rt8:K (3.05) BS01 peptide N/A N/A O50336 38886579
    875093 8rt8:M (3.05) BS01 peptide N/A GO:0005515 ... O50337 38886579
    875094 8rt8:N (3.05) BS01 peptide N/A N/A O50336 38886579
    875095 8rt8:P (3.05) BS01 peptide N/A GO:0005515 ... O50337 38886579
    875096 8rt8:Q (3.05) BS01 peptide N/A N/A O50336 38886579
    875097 8rt8:S (3.05) BS01 peptide N/A GO:0005515 ... O50337 38886579
    875098 8rt8:T (3.05) BS01 peptide N/A N/A O50336 38886579
    875099 8rt8:T (3.05) BS02 peptide N/A N/A O50336 38886579
    875100 8rt8:V (3.05) BS01 peptide N/A GO:0005515 ... O50337 38886579
    875101 8rt8:W (3.05) BS01 peptide N/A N/A O50336 38886579
    875102 8rt8:Y (3.05) BS01 peptide N/A GO:0005515 ... O50337 38886579
    875103 8rt8:Z (3.05) BS01 peptide N/A N/A O50336 38886579
    875104 8rt8:b (3.05) BS01 peptide N/A GO:0005515 ... O50337 38886579
    875105 8rt8:c (3.05) BS01 peptide N/A N/A O50336 38886579
    875106 8rt8:e (3.05) BS01 peptide N/A GO:0005515 ... O50337 38886579
    875107 8rt8:f (3.05) BS01 peptide N/A N/A O50336 38886579
    875108 8rt8:h (3.05) BS01 peptide N/A GO:0005515 ... O50337 38886579
    875109 8rt8:i (3.05) BS01 peptide N/A N/A O50336 38886579
    875110 8rt8:k (3.05) BS01 peptide N/A GO:0005515 ... O50337 38886579
    875111 8rt8:l (3.05) BS01 peptide N/A N/A O50336 38886579
    875112 8rt8:n (3.05) BS01 peptide N/A GO:0005515 ... O50337 38886579
    875113 8rt8:o (3.05) BS01 peptide N/A N/A O50336 38886579
    875114 8rt8:v (3.05) BS01 peptide N/A N/A O50336 38886579
    875115 8rt8:z (3.05) BS01 peptide N/A N/A O50336 38886579
    875116 8rta:E (6.22) BS01 peptide N/A GO:0005515 ... O50335 38886579
    875117 8rtc:A (2.83) BS01 peptide N/A N/A A0ACD6B8Y4 39137235
    875118 8rtc:A (2.83) BS02 A1H22 N/A N/A A0ACD6B8Y4 39137235
    875119 8rtc:A (2.83) BS03 A1H22 N/A N/A A0ACD6B8Y4 39137235
    875120 8rtc:A (2.83) BS04 A1H22 N/A N/A A0ACD6B8Y4 39137235
    875121 8rtc:B (2.83) BS01 peptide N/A N/A A0ACD6B8Y4 39137235
    875122 8rtc:B (2.83) BS02 A1H22 N/A N/A A0ACD6B8Y4 39137235
    875123 8rte:A (2.4) BS01 peptide N/A N/A D6R410 39137235
    875124 8rte:B (2.4) BS01 peptide N/A N/A D6R410 39137235
    875125 8rtg:A (1.461) BS01 SF4 N/A GO:0005506 ... P07598 N/A
    875126 8rtg:A (1.461) BS02 SF4 N/A GO:0005506 ... P07598 N/A
    875127 8rtg:A (1.461) BS03 SF4 N/A GO:0005506 ... P07598 N/A
    875128 8rth:A (2.37) BS01 BTI ? GO:0000166 ... Q57YQ4 38593794
    875129 8rth:B (2.37) BS01 BTI 6.4.1.4 GO:0004485 ... Q385A6 38593794
    875130 8rth:C (2.37) BS01 BTI ? GO:0000166 ... Q57YQ4 38593794
    875131 8rth:D (2.37) BS01 BTI 6.4.1.4 GO:0004485 ... Q385A6 38593794
    875132 8rth:E (2.37) BS01 BTI ? GO:0000166 ... Q57YQ4 38593794
    875133 8rth:F (2.37) BS01 BTI 6.4.1.4 GO:0004485 ... Q385A6 38593794
    875134 8rth:G (2.37) BS01 BTI ? GO:0000166 ... Q57YQ4 38593794
    875135 8rth:H (2.37) BS01 BTI 6.4.1.4 GO:0004485 ... Q385A6 38593794
    875136 8rth:I (2.37) BS01 BTI ? GO:0000166 ... Q57YQ4 38593794
    875137 8rth:J (2.37) BS01 BTI 6.4.1.4 GO:0004485 ... Q385A6 38593794
    875138 8rth:K (2.37) BS01 BTI ? GO:0000166 ... Q57YQ4 38593794
    875139 8rth:L (2.37) BS01 BTI 6.4.1.4 GO:0004485 ... Q385A6 38593794
    875140 8rti:A (1.502) BS01 SF4 N/A GO:0005506 ... P07598 N/A
    875141 8rti:A (1.502) BS02 SF4 N/A GO:0005506 ... P07598 N/A
    875142 8rti:A (1.502) BS03 SF4 N/A GO:0005506 ... P07598 N/A
    875143 8rtj:AAA (1.27) BS01 I3Y N/A GO:0003796 ... P00698 38923243
    875144 8rtk:AAA (1.21) BS01 VVO N/A GO:0003796 ... P00698 38923243
    875145 8rtk:AAA (1.21) BS02 VVB N/A GO:0003796 ... P00698 38923243
    875146 8rtl:A (1.89) BS01 MGD N/A GO:0003954 ... Q7SIF4 N/A
    875147 8rtl:A (1.89) BS02 MGD N/A GO:0003954 ... Q7SIF4 N/A
    875148 8rtl:A (1.89) BS03 F3S N/A GO:0003954 ... Q7SIF4 N/A
    875149 8rtl:B (1.89) BS01 FES N/A GO:0050611 ... Q7SIF3 N/A
    875150 8rtl:C (1.89) BS01 MGD N/A GO:0003954 ... Q7SIF4 N/A
    875151 8rtl:C (1.89) BS02 MGD N/A GO:0003954 ... Q7SIF4 N/A
    875152 8rtl:C (1.89) BS03 F3S N/A GO:0003954 ... Q7SIF4 N/A
    875153 8rtl:D (1.89) BS01 FES N/A GO:0050611 ... Q7SIF3 N/A
    875154 8rtl:E (1.89) BS01 F3S N/A GO:0003954 ... Q7SIF4 N/A
    875155 8rtl:E (1.89) BS02 MGD N/A GO:0003954 ... Q7SIF4 N/A
    875156 8rtl:E (1.89) BS03 MGD N/A GO:0003954 ... Q7SIF4 N/A
    875157 8rtl:F (1.89) BS01 FES N/A GO:0050611 ... Q7SIF3 N/A
    875158 8rtl:G (1.89) BS01 MGD N/A GO:0003954 ... Q7SIF4 N/A
    875159 8rtl:G (1.89) BS02 MGD N/A GO:0003954 ... Q7SIF4 N/A
    875160 8rtl:G (1.89) BS03 F3S N/A GO:0003954 ... Q7SIF4 N/A
    875161 8rtl:H (1.89) BS01 FES N/A GO:0050611 ... Q7SIF3 N/A
    875162 8rtm:A (1.87) BS01 MGD N/A GO:0003954 ... Q7SIF4 N/A
    875163 8rtm:A (1.87) BS02 MGD N/A GO:0003954 ... Q7SIF4 N/A
    875164 8rtm:A (1.87) BS03 F3S N/A GO:0003954 ... Q7SIF4 N/A
    875165 8rtm:A (1.87) BS04 SBO N/A GO:0003954 ... Q7SIF4 N/A
    875166 8rtm:B (1.87) BS01 FES N/A GO:0050611 ... Q7SIF3 N/A
    875167 8rtm:C (1.87) BS01 F3S N/A GO:0003954 ... Q7SIF4 N/A
    875168 8rtm:C (1.87) BS02 MGD N/A GO:0003954 ... Q7SIF4 N/A
    875169 8rtm:C (1.87) BS03 MGD N/A GO:0003954 ... Q7SIF4 N/A
    875170 8rtm:C (1.87) BS04 SBO N/A GO:0003954 ... Q7SIF4 N/A
    875171 8rtm:D (1.87) BS01 FES N/A GO:0050611 ... Q7SIF3 N/A
    875172 8rtm:E (1.87) BS01 MGD N/A GO:0003954 ... Q7SIF4 N/A
    875173 8rtm:E (1.87) BS02 MGD N/A GO:0003954 ... Q7SIF4 N/A
    875174 8rtm:E (1.87) BS03 F3S N/A GO:0003954 ... Q7SIF4 N/A
    875175 8rtm:E (1.87) BS04 SBO N/A GO:0003954 ... Q7SIF4 N/A
    875176 8rtm:F (1.87) BS01 FES N/A GO:0050611 ... Q7SIF3 N/A
    875177 8rtm:G (1.87) BS01 MGD N/A GO:0003954 ... Q7SIF4 N/A
    875178 8rtm:G (1.87) BS02 MGD N/A GO:0003954 ... Q7SIF4 N/A
    875179 8rtm:G (1.87) BS03 F3S N/A GO:0003954 ... Q7SIF4 N/A
    875180 8rtm:G (1.87) BS04 SBO N/A GO:0003954 ... Q7SIF4 N/A
    875181 8rtm:H (1.87) BS01 FES N/A GO:0050611 ... Q7SIF3 N/A
    875182 8rto:AAA (2.4) BS01 CU N/A GO:0005507 ... Q12737 N/A
    875183 8rto:AAA (2.4) BS02 CU N/A GO:0005507 ... Q12737 N/A
    875184 8rto:AAA (2.4) BS03 CU N/A GO:0005507 ... Q12737 N/A
    875185 8rto:AAA (2.4) BS04 CU N/A GO:0005507 ... Q12737 N/A
    875186 8rto:AAA (2.4) BS05 ATP N/A GO:0005507 ... Q12737 N/A
    875187 8rto:AAA (2.4) BS06 OXY N/A GO:0005507 ... Q12737 N/A
    875188 8rto:BBB (2.4) BS01 CU N/A GO:0005507 ... Q12737 N/A
    875189 8rto:BBB (2.4) BS02 CU N/A GO:0005507 ... Q12737 N/A
    875190 8rto:BBB (2.4) BS03 CU N/A GO:0005507 ... Q12737 N/A
    875191 8rto:BBB (2.4) BS04 CU N/A GO:0005507 ... Q12737 N/A
    875192 8rto:BBB (2.4) BS05 ATP N/A GO:0005507 ... Q12737 N/A
    875193 8rto:BBB (2.4) BS06 OXY N/A GO:0005507 ... Q12737 N/A
    875194 8rto:CCC (2.4) BS01 CU N/A GO:0005507 ... Q12737 N/A
    875195 8rto:CCC (2.4) BS02 CU N/A GO:0005507 ... Q12737 N/A
    875196 8rto:CCC (2.4) BS03 CU N/A GO:0005507 ... Q12737 N/A
    875197 8rto:CCC (2.4) BS04 CU N/A GO:0005507 ... Q12737 N/A
    875198 8rto:CCC (2.4) BS05 ATP N/A GO:0005507 ... Q12737 N/A
    875199 8rto:CCC (2.4) BS06 OXY N/A GO:0005507 ... Q12737 N/A
    875200 8rto:DDD (2.4) BS01 CU N/A GO:0005507 ... Q12737 N/A

    Reference:
  • Chengxin Zhang, Xi Zhang, Lydia Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).