SEQ2FUN

BioLiP
Download all results in tab-seperated text for 1072681 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.
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    # PDB
    (Resolution Å)
    Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    876201 8ry1:C (3.85) BS02 5GP N/A GO:0003824 ... A0QYE8 N/A
    876202 8ry1:D (3.85) BS01 5GP N/A GO:0003824 ... A0QYE8 N/A
    876203 8ry1:D (3.85) BS02 5GP N/A GO:0003824 ... A0QYE8 N/A
    876204 8ry1:E (3.85) BS01 5GP N/A GO:0003824 ... A0QYE8 N/A
    876205 8ry1:E (3.85) BS02 5GP N/A GO:0003824 ... A0QYE8 N/A
    876206 8ry1:F (3.85) BS01 5GP N/A GO:0003824 ... A0QYE8 N/A
    876207 8ry1:F (3.85) BS02 5GP N/A GO:0003824 ... A0QYE8 N/A
    876208 8ry1:G (3.85) BS01 5GP N/A GO:0003824 ... A0QYE8 N/A
    876209 8ry1:G (3.85) BS02 5GP N/A GO:0003824 ... A0QYE8 N/A
    876210 8ry1:H (3.85) BS01 5GP N/A GO:0003824 ... A0QYE8 N/A
    876211 8ry1:H (3.85) BS02 5GP N/A GO:0003824 ... A0QYE8 N/A
    876212 8ry3:A (2.52) BS01 5GP N/A GO:0003824 ... A0QYE8 N/A
    876213 8ry3:A (2.52) BS02 GTP N/A GO:0003824 ... A0QYE8 N/A
    876214 8ry3:B (2.52) BS01 5GP N/A GO:0003824 ... A0QYE8 N/A
    876215 8ry3:B (2.52) BS02 GTP N/A GO:0003824 ... A0QYE8 N/A
    876216 8ry3:C (2.52) BS01 5GP N/A GO:0003824 ... A0QYE8 N/A
    876217 8ry3:C (2.52) BS02 GTP N/A GO:0003824 ... A0QYE8 N/A
    876218 8ry3:D (2.52) BS01 5GP N/A GO:0003824 ... A0QYE8 N/A
    876219 8ry3:D (2.52) BS02 GTP N/A GO:0003824 ... A0QYE8 N/A
    876220 8ry3:E (2.52) BS01 5GP N/A GO:0003824 ... A0QYE8 N/A
    876221 8ry3:E (2.52) BS02 GTP N/A GO:0003824 ... A0QYE8 N/A
    876222 8ry3:F (2.52) BS01 5GP N/A GO:0003824 ... A0QYE8 N/A
    876223 8ry3:F (2.52) BS02 GTP N/A GO:0003824 ... A0QYE8 N/A
    876224 8ry3:G (2.52) BS01 5GP N/A GO:0003824 ... A0QYE8 N/A
    876225 8ry3:G (2.52) BS02 GTP N/A GO:0003824 ... A0QYE8 N/A
    876226 8ry3:H (2.52) BS01 5GP N/A GO:0003824 ... A0QYE8 N/A
    876227 8ry3:H (2.52) BS02 GTP N/A GO:0003824 ... A0QYE8 N/A
    876228 8ry4:A (3.72) BS01 5GP N/A GO:0003824 ... A0QYE8 N/A
    876229 8ry4:A (3.72) BS02 GTP N/A GO:0003824 ... A0QYE8 N/A
    876230 8ry4:B (3.72) BS01 5GP N/A GO:0003824 ... A0QYE8 N/A
    876231 8ry4:B (3.72) BS02 GTP N/A GO:0003824 ... A0QYE8 N/A
    876232 8ry4:C (3.72) BS01 5GP N/A GO:0003824 ... A0QYE8 N/A
    876233 8ry4:C (3.72) BS02 GTP N/A GO:0003824 ... A0QYE8 N/A
    876234 8ry4:D (3.72) BS01 5GP N/A GO:0003824 ... A0QYE8 N/A
    876235 8ry4:D (3.72) BS02 GTP N/A GO:0003824 ... A0QYE8 N/A
    876236 8ry4:E (3.72) BS01 5GP N/A GO:0003824 ... A0QYE8 N/A
    876237 8ry4:E (3.72) BS02 GTP N/A GO:0003824 ... A0QYE8 N/A
    876238 8ry4:F (3.72) BS01 5GP N/A GO:0003824 ... A0QYE8 N/A
    876239 8ry4:F (3.72) BS02 GTP N/A GO:0003824 ... A0QYE8 N/A
    876240 8ry4:G (3.72) BS01 5GP N/A GO:0003824 ... A0QYE8 N/A
    876241 8ry4:G (3.72) BS02 GTP N/A GO:0003824 ... A0QYE8 N/A
    876242 8ry4:H (3.72) BS01 5GP N/A GO:0003824 ... A0QYE8 N/A
    876243 8ry4:H (3.72) BS02 GTP N/A GO:0003824 ... A0QYE8 N/A
    876244 8ry5:A (2.48) BS01 5GP N/A GO:0003824 ... A0QYE8 N/A
    876245 8ry5:A (2.48) BS02 ATP N/A GO:0003824 ... A0QYE8 N/A
    876246 8ry5:A (2.48) BS03 ATP N/A GO:0003824 ... A0QYE8 N/A
    876247 8ry5:B (2.48) BS01 5GP N/A GO:0003824 ... A0QYE8 N/A
    876248 8ry5:B (2.48) BS02 ATP N/A GO:0003824 ... A0QYE8 N/A
    876249 8ry5:B (2.48) BS03 ATP N/A GO:0003824 ... A0QYE8 N/A
    876250 8ry5:C (2.48) BS01 5GP N/A GO:0003824 ... A0QYE8 N/A
    876251 8ry5:C (2.48) BS02 ATP N/A GO:0003824 ... A0QYE8 N/A
    876252 8ry5:C (2.48) BS03 ATP N/A GO:0003824 ... A0QYE8 N/A
    876253 8ry5:D (2.48) BS01 5GP N/A GO:0003824 ... A0QYE8 N/A
    876254 8ry5:D (2.48) BS02 ATP N/A GO:0003824 ... A0QYE8 N/A
    876255 8ry5:D (2.48) BS03 ATP N/A GO:0003824 ... A0QYE8 N/A
    876256 8ry5:E (2.48) BS01 ATP N/A GO:0003824 ... A0QYE8 N/A
    876257 8ry5:E (2.48) BS02 5GP N/A GO:0003824 ... A0QYE8 N/A
    876258 8ry5:E (2.48) BS03 ATP N/A GO:0003824 ... A0QYE8 N/A
    876259 8ry5:F (2.48) BS01 ATP N/A GO:0003824 ... A0QYE8 N/A
    876260 8ry5:F (2.48) BS02 5GP N/A GO:0003824 ... A0QYE8 N/A
    876261 8ry5:F (2.48) BS03 ATP N/A GO:0003824 ... A0QYE8 N/A
    876262 8ry5:G (2.48) BS01 ATP N/A GO:0003824 ... A0QYE8 N/A
    876263 8ry5:G (2.48) BS02 5GP N/A GO:0003824 ... A0QYE8 N/A
    876264 8ry5:G (2.48) BS03 ATP N/A GO:0003824 ... A0QYE8 N/A
    876265 8ry5:H (2.48) BS01 ATP N/A GO:0003824 ... A0QYE8 N/A
    876266 8ry5:H (2.48) BS02 5GP N/A GO:0003824 ... A0QYE8 N/A
    876267 8ry5:H (2.48) BS03 ATP N/A GO:0003824 ... A0QYE8 N/A
    876268 8ryb:A (2.84) BS01 5GP N/A GO:0003824 ... A0QYE8 N/A
    876269 8ryb:A (2.84) BS02 5GP N/A GO:0003824 ... A0QYE8 N/A
    876270 8ryb:B (2.84) BS01 5GP N/A GO:0003824 ... A0QYE8 N/A
    876271 8ryb:B (2.84) BS02 5GP N/A GO:0003824 ... A0QYE8 N/A
    876272 8ryb:C (2.84) BS01 5GP N/A GO:0003824 ... A0QYE8 N/A
    876273 8ryb:C (2.84) BS02 5GP N/A GO:0003824 ... A0QYE8 N/A
    876274 8ryb:D (2.84) BS01 5GP N/A GO:0003824 ... A0QYE8 N/A
    876275 8ryb:D (2.84) BS02 5GP N/A GO:0003824 ... A0QYE8 N/A
    876276 8ryb:E (2.84) BS01 5GP N/A GO:0003824 ... A0QYE8 N/A
    876277 8ryb:E (2.84) BS02 5GP N/A GO:0003824 ... A0QYE8 N/A
    876278 8ryb:F (2.84) BS01 5GP N/A GO:0003824 ... A0QYE8 N/A
    876279 8ryb:F (2.84) BS02 5GP N/A GO:0003824 ... A0QYE8 N/A
    876280 8ryb:G (2.84) BS01 5GP N/A GO:0003824 ... A0QYE8 N/A
    876281 8ryb:G (2.84) BS02 5GP N/A GO:0003824 ... A0QYE8 N/A
    876282 8ryb:H (2.84) BS01 5GP N/A GO:0003824 ... A0QYE8 N/A
    876283 8ryb:H (2.84) BS02 5GP N/A GO:0003824 ... A0QYE8 N/A
    876284 8ryc:A (2.09) BS01 A1H32 N/A N/A Q15562 N/A
    876285 8ryd:A (3.0) BS01 SAH N/A N/A Q9HYR0 39905070
    876286 8ryd:B (3.0) BS01 SAH N/A N/A Q9HYR0 39905070
    876287 8ryd:C (3.0) BS01 SAH N/A N/A Q9HYR0 39905070
    876288 8ryd:D (3.0) BS01 SAH N/A N/A Q9HYR0 39905070
    876289 8rye:A (1.95) BS01 MTA N/A N/A Q9HYR0 39905070
    876290 8rye:A (1.95) BS02 02A N/A N/A Q9HYR0 39905070
    876291 8rye:B (1.95) BS01 MTA N/A N/A Q9HYR0 39905070
    876292 8rye:B (1.95) BS02 02A N/A N/A Q9HYR0 39905070
    876293 8rye:C (1.95) BS01 MTA N/A N/A Q9HYR0 39905070
    876294 8rye:C (1.95) BS02 02A N/A N/A Q9HYR0 39905070
    876295 8rye:D (1.95) BS01 MTA N/A N/A Q9HYR0 39905070
    876296 8rye:D (1.95) BS02 02A N/A N/A Q9HYR0 39905070
    876297 8ryf:A (1.95) BS01 MTA N/A N/A Q9HYR0 39905070
    876298 8ryf:A (1.95) BS02 02A N/A N/A Q9HYR0 39905070
    876299 8ryf:B (1.95) BS01 MTA N/A N/A Q9HYR0 39905070
    876300 8ryg:A (2.1) BS01 SAH N/A N/A A0ACD6B920 39905070
    876301 8ryg:B (2.1) BS01 SAH N/A N/A A0ACD6B920 39905070
    876302 8ryh:A (1.773) BS01 SF4 N/A GO:0005506 ... P07598
    P07603
    N/A
    876303 8ryh:A (1.773) BS02 SF4 N/A GO:0005506 ... P07598
    P07603
    N/A
    876304 8ryh:A (1.773) BS03 SF4 N/A GO:0005506 ... P07598
    P07603
    N/A
    876305 8ryh:A (1.773) BS04 402 N/A GO:0005506 ... P07598
    P07603
    N/A
    876306 8ryi:B (2.06) BS01 C5J N/A GO:0008783 ... A0AAX7FLU4 39271653
    876307 8ryi:B (2.06) BS02 URE N/A GO:0008783 ... A0AAX7FLU4 39271653
    876308 8ryi:B (2.06) BS03 NI N/A GO:0008783 ... A0AAX7FLU4 39271653
    876309 8ryi:B (2.06) BS04 NI N/A GO:0008783 ... A0AAX7FLU4 39271653
    876310 8ryi:E (2.06) BS01 C5J N/A GO:0008783 ... A0AAX7FLU4 39271653
    876311 8ryi:E (2.06) BS02 URE N/A GO:0008783 ... A0AAX7FLU4 39271653
    876312 8ryi:E (2.06) BS03 NI N/A GO:0008783 ... A0AAX7FLU4 39271653
    876313 8ryi:E (2.06) BS04 NI N/A GO:0008783 ... A0AAX7FLU4 39271653
    876314 8ryi:E (2.06) BS05 CA N/A GO:0008783 ... A0AAX7FLU4 39271653
    876315 8ryj:A (1.16) BS01 FRU N/A GO:0005507 ... Q89EJ6 39002715
    876316 8ryj:A (1.16) BS02 CU N/A GO:0005507 ... Q89EJ6 39002715
    876317 8ryj:A (1.16) BS03 CU N/A GO:0005507 ... Q89EJ6 39002715
    876318 8ryj:A (1.16) BS04 NO2 N/A GO:0005507 ... Q89EJ6 39002715
    876319 8ryk:A (1.8) BS01 peptide ? GO:0005125 ... P01584 38728572
    876320 8ryk:B (1.8) BS01 peptide ? GO:0005125 ... P01584 38728572
    876321 8ryk:B (1.8) BS02 peptide ? GO:0005125 ... P01584 38728572
    876322 8rym:A (2.34) BS01 peptide N/A N/A P04439 39500929
    876323 8rym:D (2.34) BS01 peptide N/A N/A N/A 39500929
    876324 8rym:E (2.34) BS01 peptide N/A N/A N/A 39500929
    876325 8ryn:A (1.97) BS01 peptide N/A N/A A0A583ZB34 39500929
    876326 8ryn:D (1.97) BS01 peptide N/A N/A N/A 39500929
    876327 8ryn:E (1.97) BS01 peptide N/A N/A N/A 39500929
    876328 8ryo:A (2.05) BS01 peptide N/A N/A P04439 39500929
    876329 8ryo:D (2.05) BS01 peptide N/A N/A N/A 39500929
    876330 8ryo:E (2.05) BS01 peptide N/A N/A N/A 39500929
    876331 8ryp:A (1.81) BS01 peptide N/A N/A P04439 39500929
    876332 8ryp:D (1.81) BS01 peptide N/A N/A N/A 39500929
    876333 8ryp:E (1.81) BS01 peptide N/A N/A N/A 39500929
    876334 8ryq:A (2.49) BS01 peptide N/A N/A A0A583ZB34 39500929
    876335 8ryq:D (2.49) BS01 peptide N/A N/A N/A 39500929
    876336 8ryq:E (2.49) BS01 peptide N/A N/A N/A 39500929
    876337 8ryq:F (2.49) BS01 peptide N/A N/A A0A583ZB34 39500929
    876338 8ryq:I (2.49) BS01 peptide N/A N/A N/A 39500929
    876339 8ryq:J (2.49) BS01 peptide N/A N/A N/A 39500929
    876340 8ryr:A (1.25) BS01 FRU N/A GO:0005507 ... Q89EJ6 39002715
    876341 8ryr:A (1.25) BS02 CU N/A GO:0005507 ... Q89EJ6 39002715
    876342 8ryr:A (1.25) BS03 CU N/A GO:0005507 ... Q89EJ6 39002715
    876343 8ryr:A (1.25) BS04 NO2 N/A GO:0005507 ... Q89EJ6 39002715
    876344 8ryu:A (1.45) BS01 FRU N/A GO:0005507 ... Q89EJ6 39002715
    876345 8ryu:A (1.45) BS02 CU N/A GO:0005507 ... Q89EJ6 39002715
    876346 8ryu:A (1.45) BS03 CU N/A GO:0005507 ... Q89EJ6 39002715
    876347 8ryu:A (1.45) BS04 NO N/A GO:0005507 ... Q89EJ6 39002715
    876348 8ryv:A (1.45) BS01 FRU N/A GO:0005507 ... Q89EJ6 39002715
    876349 8ryv:A (1.45) BS02 CU N/A GO:0005507 ... Q89EJ6 39002715
    876350 8ryv:A (1.45) BS03 CU N/A GO:0005507 ... Q89EJ6 39002715
    876351 8ryv:A (1.45) BS04 NO N/A GO:0005507 ... Q89EJ6 39002715
    876352 8ryz:A (2.02) BS01 AVJ N/A N/A C5CWE3 38994077
    876353 8rz3:A (2.15) BS01 UD1 N/A GO:0016757 ... C5CWE2 38994077
    876354 8rz3:B (2.15) BS01 UD1 N/A GO:0016757 ... C5CWE2 38994077
    876355 8rz3:C (2.15) BS01 UD1 N/A GO:0016757 ... C5CWE2 38994077
    876356 8rz7:A (3.37) BS01 dna N/A GO:0000287 ... P43246 N/A
    876357 8rz7:A (3.37) BS02 ADP N/A GO:0000287 ... P43246 N/A
    876358 8rz7:B (3.37) BS01 dna N/A GO:0003690 ... P20585 N/A
    876359 8rz7:B (3.37) BS02 dna N/A GO:0003690 ... P20585 N/A
    876360 8rz7:B (3.37) BS03 ADP N/A GO:0003690 ... P20585 N/A
    876361 8rz7:B (3.37) BS04 MG N/A GO:0003690 ... P20585 N/A
    876362 8rz8:A (3.06) BS01 MG N/A GO:0000287 ... P43246 N/A
    876363 8rz8:A (3.06) BS02 AGS N/A GO:0000287 ... P43246 N/A
    876364 8rz8:A (3.06) BS03 AGS N/A GO:0000287 ... P43246 N/A
    876365 8rz8:B (3.06) BS01 AGS N/A GO:0003690 ... P20585 N/A
    876366 8rz8:B (3.06) BS02 AGS N/A GO:0003690 ... P20585 N/A
    876367 8rz9:A (3.02) BS01 MG N/A GO:0000287 ... P43246 N/A
    876368 8rz9:A (3.02) BS02 AGS N/A GO:0000287 ... P43246 N/A
    876369 8rz9:A (3.02) BS03 AGS N/A GO:0000287 ... P43246 N/A
    876370 8rz9:B (3.02) BS01 AGS N/A GO:0003690 ... P20585 N/A
    876371 8rz9:B (3.02) BS02 AGS N/A GO:0003690 ... P20585 N/A
    876372 8rza:A (2.1) BS01 rna N/A GO:0003723 ... Q8U4Q7 39445822
    876373 8rza:A (2.1) BS02 rna N/A GO:0003723 ... Q8U4Q7 39445822
    876374 8rza:A (2.1) BS03 MG N/A GO:0003723 ... Q8U4Q7 39445822
    876375 8rza:A (2.1) BS04 MG N/A GO:0003723 ... Q8U4Q7 39445822
    876376 8rzb:A (1.836) BS01 A1H4A ? GO:0005125 ... P01584 38728572
    876377 8rzb:A (1.836) BS02 A1H4A ? GO:0005125 ... P01584 38728572
    876378 8rzb:B (1.836) BS01 A1H4A ? GO:0005125 ... P01584 38728572
    876379 8rzb:B (1.836) BS02 A1H4A ? GO:0005125 ... P01584 38728572
    876380 8rzb:C (1.836) BS01 A1H4A ? GO:0005125 ... P01584 38728572
    876381 8rzb:C (1.836) BS02 A1H4A ? GO:0005125 ... P01584 38728572
    876382 8rzb:D (1.836) BS01 A1H4A ? GO:0005125 ... P01584 38728572
    876383 8rzb:D (1.836) BS02 A1H4A ? GO:0005125 ... P01584 38728572
    876384 8rzc:A (2.35) BS01 A1H4D 2.1.1.56
    2.1.1.57
    2.7.7.48
    2.7.7.50
    3.1.13.-
    3.4.19.12
    3.4.22.-
    3.4.22.69
    3.6.4.12
    3.6.4.13
    4.6.1.-
    GO:0004483 ... P0DTD1 39258386
    876385 8rzc:B (2.35) BS01 ZN 2.7.7.50
    3.4.19.12
    3.4.22.-
    3.4.22.69
    GO:0003723 ... P0DTC1 39258386
    876386 8rzc:B (2.35) BS02 ZN 2.7.7.50
    3.4.19.12
    3.4.22.-
    3.4.22.69
    GO:0003723 ... P0DTC1 39258386
    876387 8rzd:A (2.1) BS01 A1H4C 2.1.1.56
    2.1.1.57
    2.7.7.48
    2.7.7.50
    3.1.13.-
    3.4.19.12
    3.4.22.-
    3.4.22.69
    3.6.4.12
    3.6.4.13
    4.6.1.-
    GO:0004483 ... P0DTD1 39258386
    876388 8rzd:B (2.1) BS01 ZN 2.7.7.50
    3.4.19.12
    3.4.22.-
    3.4.22.69
    GO:0003723 ... P0DTC1 39258386
    876389 8rzd:B (2.1) BS02 ZN 2.7.7.50
    3.4.19.12
    3.4.22.-
    3.4.22.69
    GO:0003723 ... P0DTC1 39258386
    876390 8rze:A (2.0) BS01 A1H4B 2.1.1.56
    2.1.1.57
    2.7.7.48
    2.7.7.50
    3.1.13.-
    3.4.19.12
    3.4.22.-
    3.4.22.69
    3.6.4.12
    3.6.4.13
    4.6.1.-
    GO:0004483 ... P0DTD1 39258386
    876391 8rze:B (2.0) BS01 ZN 2.7.7.50
    3.4.19.12
    3.4.22.-
    3.4.22.69
    GO:0003723 ... P0DTC1 39258386
    876392 8rze:B (2.0) BS02 ZN 2.7.7.50
    3.4.19.12
    3.4.22.-
    3.4.22.69
    GO:0003723 ... P0DTC1 39258386
    876393 8rzf:A (2.04) BS01 MG N/A GO:0003723 ... Q4J9H1 39445822
    876394 8rzg:A (1.81) BS01 A1H39 N/A N/A G0L004 39022920
    876395 8rzg:B (1.81) BS01 A1H39 N/A N/A G0L004 39022920
    876396 8rzg:B (1.81) BS02 A1H39 N/A N/A G0L004 39022920
    876397 8rzg:C (1.81) BS01 A1H39 N/A N/A G0L004 39022920
    876398 8rzg:D (1.81) BS01 A1H39 N/A N/A G0L004 39022920
    876399 8rzh:A (1.83) BS01 A1H38 N/A N/A G0L004 39022920
    876400 8rzh:A (1.83) BS02 A1H38 N/A N/A G0L004 39022920

    Reference:
  • Chengxin Zhang, Xi Zhang, Lydia Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).