SEQ2FUN

BioLiP
Download all results in tab-seperated text for 942758 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
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  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    876601 8sxb:A (2.9) BS01 P2E ? GO:0005524 ... A0A6P5CNW8 38216659
    876602 8sxd:A (2.59) BS01 WXU 1.1.1.86 GO:0000287 ... Q9PHN5 N/A
    876603 8sxd:A (2.59) BS02 MG 1.1.1.86 GO:0000287 ... Q9PHN5 N/A
    876604 8sxd:A (2.59) BS03 NDP 1.1.1.86 GO:0000287 ... Q9PHN5 N/A
    876605 8sxe:A (3.55) BS01 peptide ? GO:0004175 ... Q9HU50 38467832
    876606 8sxe:B (3.55) BS01 peptide ? GO:0004175 ... Q9HU50 38467832
    876607 8sxf:A (3.92) BS01 peptide ? GO:0004175 ... Q9HU50 38467832
    876608 8sxg:A (4.14) BS01 peptide ? GO:0004175 ... Q9HU50 38467832
    876609 8sxh:A (3.94) BS01 peptide ? GO:0004175 ... Q9HU50 38467832
    876610 8sxh:E (3.94) BS01 peptide ? GO:0004175 ... Q9HU50 38467832
    876611 8sxh:I (3.94) BS01 peptide ? GO:0004175 ... Q9HU50 38467832
    876612 8sxn:C (4.04) BS01 7YN 3.6.4.- N/A Q96P20 N/A
    876613 8sxn:C (4.04) BS02 ATP 3.6.4.- N/A Q96P20 N/A
    876614 8sxn:D (4.04) BS01 7YN 3.6.4.- N/A Q96P20 N/A
    876615 8sxn:D (4.04) BS02 ATP 3.6.4.- N/A Q96P20 N/A
    876616 8sxr:A (2.114) BS01 WZK 2.1.1.56
    2.1.1.57
    2.7.7.48
    2.7.7.50
    3.1.13.-
    3.4.19.12
    3.4.22.-
    3.4.22.69
    3.6.4.12
    3.6.4.13
    4.6.1.-    		 GO:0008233 ... P0DTD1 37555275
    876617 8sxr:B (2.114) BS01 WZK 2.1.1.56
    2.1.1.57
    2.7.7.48
    2.7.7.50
    3.1.13.-
    3.4.19.12
    3.4.22.-
    3.4.22.69
    3.6.4.12
    3.6.4.13
    4.6.1.-    		 GO:0008233 ... P0DTD1 37555275
    876618 8sxt:A (3.3) BS01 dna 2.7.7.49
    3.1.21.-    		 GO:0003720 ... O00370 38096902
    876619 8sxt:A (3.3) BS02 rna 2.7.7.49
    3.1.21.-    		 GO:0003720 ... O00370 38096902
    876620 8sxt:A (3.3) BS03 TTP 2.7.7.49
    3.1.21.-    		 GO:0003720 ... O00370 38096902
    876621 8sxt:A (3.3) BS04 MG 2.7.7.49
    3.1.21.-    		 GO:0003720 ... O00370 38096902
    876622 8sxu:A (3.66) BS01 rna 2.7.7.49
    3.1.21.-    		 GO:0003720 ... O00370 38096902
    876623 8sxx:A (3.6) BS01 NAD N/A N/A N/A 38096827
    876624 8sxx:B (3.6) BS01 NAD N/A N/A N/A 38096827
    876625 8sxx:C (3.6) BS01 NAD N/A N/A N/A 38096827
    876626 8sxx:D (3.6) BS01 NAD N/A N/A N/A 38096827
    876627 8sxx:E (3.6) BS01 NAD N/A N/A N/A 38096827
    876628 8sxx:F (3.6) BS01 NAD N/A N/A N/A 38096827
    876629 8sxx:G (3.6) BS01 NAD N/A N/A N/A 38096827
    876630 8sxx:H (3.6) BS01 NAD N/A N/A N/A 38096827
    876631 8sxx:I (3.6) BS01 NAD N/A N/A N/A 38096827
    876632 8sxx:J (3.6) BS01 NAD N/A N/A N/A 38096827
    876633 8sxx:K (3.6) BS01 NAD N/A N/A N/A 38096827
    876634 8sxx:L (3.6) BS01 NAD N/A N/A N/A 38096827
    876635 8sxy:A (1.8) BS01 MJ3 5.1.3.14 GO:0000166 ... Q72KY0 37660908
    876636 8sxy:B (1.8) BS01 MJ3 5.1.3.14 GO:0000166 ... Q72KY0 37660908
    876637 8sxz:b (3.26) BS01 GDP 3.6.5.5 GO:0003924 ... Q05193 38663399
    876638 8sxz:b (3.26) BS02 MG 3.6.5.5 GO:0003924 ... Q05193 38663399
    876639 8sxz:c (3.26) BS01 GDP 3.6.5.5 GO:0003924 ... Q05193 38663399
    876640 8sxz:c (3.26) BS02 MG 3.6.5.5 GO:0003924 ... Q05193 38663399
    876641 8sxz:f (3.26) BS01 GDP 3.6.5.5 GO:0003924 ... Q05193 38663399
    876642 8sxz:f (3.26) BS02 MG 3.6.5.5 GO:0003924 ... Q05193 38663399
    876643 8sxz:g (3.26) BS01 GDP 3.6.5.5 GO:0003924 ... Q05193 38663399
    876644 8sxz:g (3.26) BS02 MG 3.6.5.5 GO:0003924 ... Q05193 38663399
    876645 8sy0:A (2.1) BS01 MJ3 5.1.3.14 GO:0000166 ... Q72KY0 37660908
    876646 8sy0:B (2.1) BS01 MJ3 5.1.3.14 GO:0000166 ... Q72KY0 37660908
    876647 8sy3:A (3.2) BS01 CU ? N/A A0A445DYW3 38355722
    876648 8sy3:B (3.2) BS01 CU ? N/A A0A445DYW3 38355722
    876649 8sy5:I (2.7) BS01 rna 2.7.7.6 GO:0000345 ... P0A8V2 38086811
    876650 8sy5:J (2.7) BS01 dna 2.7.7.6 GO:0000287 ... P0A8T7 38086811
    876651 8sy5:J (2.7) BS02 ZN 2.7.7.6 GO:0000287 ... P0A8T7 38086811
    876652 8sy5:J (2.7) BS03 MG 2.7.7.6 GO:0000287 ... P0A8T7 38086811
    876653 8sy5:J (2.7) BS04 X0F 2.7.7.6 GO:0000287 ... P0A8T7 38086811
    876654 8sy6:I (3.28) BS01 dna 2.7.7.6 GO:0000345 ... P0A8V2 38086811
    876655 8sy6:I (3.28) BS02 rna 2.7.7.6 GO:0000345 ... P0A8V2 38086811
    876656 8sy6:I (3.28) BS03 UTP 2.7.7.6 GO:0000345 ... P0A8V2 38086811
    876657 8sy6:J (3.28) BS01 dna 2.7.7.6 GO:0000287 ... P0A8T7 38086811
    876658 8sy6:J (3.28) BS02 rna 2.7.7.6 GO:0000287 ... P0A8T7 38086811
    876659 8sy6:J (3.28) BS03 DG 2.7.7.6 GO:0000287 ... P0A8T7 38086811
    876660 8sy6:J (3.28) BS04 ZN 2.7.7.6 GO:0000287 ... P0A8T7 38086811
    876661 8sy6:J (3.28) BS05 ZN 2.7.7.6 GO:0000287 ... P0A8T7 38086811
    876662 8sy6:J (3.28) BS06 MG 2.7.7.6 GO:0000287 ... P0A8T7 38086811
    876663 8sy6:J (3.28) BS07 UTP 2.7.7.6 GO:0000287 ... P0A8T7 38086811
    876664 8sy7:I (2.65) BS01 rna 2.7.7.6 GO:0000345 ... P0A8V2 38086811
    876665 8sy7:I (2.65) BS02 dna 2.7.7.6 GO:0000345 ... P0A8V2 38086811
    876666 8sy7:I (2.65) BS03 X0O 2.7.7.6 GO:0000345 ... P0A8V2 38086811
    876667 8sy7:J (2.65) BS01 dna 2.7.7.6 GO:0000287 ... P0A8T7 38086811
    876668 8sy7:J (2.65) BS02 ZN 2.7.7.6 GO:0000287 ... P0A8T7 38086811
    876669 8sy7:J (2.65) BS03 ZN 2.7.7.6 GO:0000287 ... P0A8T7 38086811
    876670 8sy7:J (2.65) BS04 MG 2.7.7.6 GO:0000287 ... P0A8T7 38086811
    876671 8sy7:J (2.65) BS05 X0O 2.7.7.6 GO:0000287 ... P0A8T7 38086811
    876672 8sy9:A (2.2) BS01 MJL 5.1.3.14 GO:0000166 ... Q72KY0 37660908
    876673 8sy9:A (2.2) BS02 UDP 5.1.3.14 GO:0000166 ... Q72KY0 37660908
    876674 8sy9:B (2.2) BS01 MJL 5.1.3.14 GO:0000166 ... Q72KY0 37660908
    876675 8sy9:B (2.2) BS02 UD1 5.1.3.14 GO:0000166 ... Q72KY0 37660908
    876676 8sya:A (2.3) BS01 MJL 5.1.3.14 GO:0000166 ... Q72KY0 37660908
    876677 8sya:B (2.3) BS01 MJL 5.1.3.14 GO:0000166 ... Q72KY0 37660908
    876678 8sya:B (2.3) BS02 UDP 5.1.3.14 GO:0000166 ... Q72KY0 37660908
    876679 8syb:A (2.2) BS01 MJL 5.1.3.14 GO:0000166 ... Q72KY0 37660908
    876680 8syb:A (2.2) BS02 UD1 5.1.3.14 GO:0000166 ... Q72KY0 37660908
    876681 8syb:B (2.2) BS01 MJL 5.1.3.14 GO:0000166 ... Q72KY0 37660908
    876682 8syb:B (2.2) BS02 UD1 5.1.3.14 GO:0000166 ... Q72KY0 37660908
    876683 8syc:A (2.7) BS01 MG 3.1.4.17 GO:0004114 ... Q13370 38284310
    876684 8syc:A (2.7) BS02 X5W 3.1.4.17 GO:0004114 ... Q13370 38284310
    876685 8syc:D (2.7) BS01 MG 3.1.4.17 GO:0004114 ... Q13370 38284310
    876686 8syc:D (2.7) BS02 X5W 3.1.4.17 GO:0004114 ... Q13370 38284310
    876687 8syd:A (2.2) BS01 MJL 5.1.3.14 GO:0000166 ... Q72KY0 37660908
    876688 8syd:A (2.2) BS02 UD1 5.1.3.14 GO:0000166 ... Q72KY0 37660908
    876689 8syd:B (2.2) BS01 MJL 5.1.3.14 GO:0000166 ... Q72KY0 37660908
    876690 8syd:B (2.2) BS02 UD1 5.1.3.14 GO:0000166 ... Q72KY0 37660908
    876691 8sye:A (1.9) BS01 MJL 5.1.3.14 GO:0000166 ... Q72KY0 37660908
    876692 8sye:A (1.9) BS02 UDP 5.1.3.14 GO:0000166 ... Q72KY0 37660908
    876693 8sye:B (1.9) BS01 MJL 5.1.3.14 GO:0000166 ... Q72KY0 37660908
    876694 8sye:B (1.9) BS02 UDP 5.1.3.14 GO:0000166 ... Q72KY0 37660908
    876695 8syh:A (2.0) BS01 MJL 5.1.3.14 GO:0000166 ... Q72KY0 37660908
    876696 8syh:A (2.0) BS02 UDP 5.1.3.14 GO:0000166 ... Q72KY0 37660908
    876697 8syh:B (2.0) BS01 MJL 5.1.3.14 GO:0000166 ... Q72KY0 37660908
    876698 8syh:B (2.0) BS02 UDP 5.1.3.14 GO:0000166 ... Q72KY0 37660908
    876699 8syi:C (2.94) BS01 dna 2.7.7.6 GO:0000428 ... Q31N17 38354263
    876700 8syi:C (2.94) BS02 rna 2.7.7.6 GO:0000428 ... Q31N17 38354263
    876701 8syi:C (2.94) BS03 dna 2.7.7.6 GO:0000428 ... Q31N17 38354263
    876702 8syi:D (2.94) BS01 dna 2.7.7.6 GO:0000287 ... P42079 38354263
    876703 8syi:D (2.94) BS02 rna 2.7.7.6 GO:0000287 ... P42079 38354263
    876704 8syi:D (2.94) BS03 dna 2.7.7.6 GO:0000287 ... P42079 38354263
    876705 8syi:D (2.94) BS04 MG 2.7.7.6 GO:0000287 ... P42079 38354263
    876706 8syi:D (2.94) BS05 ZN 2.7.7.6 GO:0000287 ... P42079 38354263
    876707 8syi:G (2.94) BS01 dna ? GO:0005829 ... Q31QK2 38354263
    876708 8syi:Z (2.94) BS01 dna 2.7.7.6 GO:0000428 ... Q31N15 38354263
    876709 8syi:Z (2.94) BS02 ZN 2.7.7.6 GO:0000428 ... Q31N15 38354263
    876710 8syl:1 (2.9) BS01 rna ? GO:0000027 ... P0A7M6 37537169
    876711 8syl:2 (2.9) BS01 rna ? GO:0000027 ... P0AG51 37537169
    876712 8syl:2 (2.9) BS02 rna ? GO:0000027 ... P0AG51 37537169
    876713 8syl:3 (2.9) BS01 rna ? GO:0002181 ... P0A7M9 37537169
    876714 8syl:3 (2.9) BS02 ZN ? GO:0002181 ... P0A7M9 37537169
    876715 8syl:4 (2.9) BS01 rna ? GO:0000027 ... P0A7N4 37537169
    876716 8syl:5 (2.9) BS01 rna ? GO:0000027 ... P0A7N9 37537169
    876717 8syl:6 (2.9) BS01 rna ? GO:0002181 ... P0A7P5 37537169
    876718 8syl:7 (2.9) BS01 rna ? GO:0002181 ... P0A7Q1 37537169
    876719 8syl:8 (2.9) BS01 rna ? GO:0002181 ... P0A7Q6 37537169
    876720 8syl:8 (2.9) BS02 ZN ? GO:0002181 ... P0A7Q6 37537169
    876721 8syl:C (2.9) BS01 rna ? GO:0000027 ... P60422 37537169
    876722 8syl:C (2.9) BS02 rna ? GO:0000027 ... P60422 37537169
    876723 8syl:C (2.9) BS03 MG ? GO:0000027 ... P60422 37537169
    876724 8syl:D (2.9) BS01 rna ? GO:0000027 ... P60438 37537169
    876725 8syl:E (2.9) BS01 rna ? GO:0001070 ... P60723 37537169
    876726 8syl:F (2.9) BS01 rna ? GO:0000027 ... P62399 37537169
    876727 8syl:F (2.9) BS02 rna ? GO:0000027 ... P62399 37537169
    876728 8syl:F (2.9) BS03 rna ? GO:0000027 ... P62399 37537169
    876729 8syl:G (2.9) BS01 rna ? GO:0000027 ... P0AG55 37537169
    876730 8syl:H (2.9) BS01 rna ? GO:0002181 ... P0A7R1 37537169
    876731 8syl:L (2.9) BS01 rna ? GO:0002181 ... P0AA10 37537169
    876732 8syl:M (2.9) BS01 rna ? GO:0002181 ... P0ADY3 37537169
    876733 8syl:M (2.9) BS02 rna ? GO:0002181 ... P0ADY3 37537169
    876734 8syl:N (2.9) BS01 rna ? GO:0002181 ... P02413 37537169
    876735 8syl:O (2.9) BS01 rna ? GO:0000027 ... P0ADY7 37537169
    876736 8syl:O (2.9) BS02 rna ? GO:0000027 ... P0ADY7 37537169
    876737 8syl:O (2.9) BS03 rna ? GO:0000027 ... P0ADY7 37537169
    876738 8syl:P (2.9) BS01 rna ? GO:0000027 ... P0AG44 37537169
    876739 8syl:Q (2.9) BS01 rna ? GO:0002181 ... P0C018 37537169
    876740 8syl:Q (2.9) BS02 rna ? GO:0002181 ... P0C018 37537169
    876741 8syl:R (2.9) BS01 rna ? GO:0000027 ... P0A7K6 37537169
    876742 8syl:R (2.9) BS02 rna ? GO:0000027 ... P0A7K6 37537169
    876743 8syl:S (2.9) BS01 rna ? GO:0000027 ... P0A7L3 37537169
    876744 8syl:T (2.9) BS01 rna ? GO:0002181 ... P0AG48 37537169
    876745 8syl:U (2.9) BS01 rna ? GO:0002181 ... P61175 37537169
    876746 8syl:V (2.9) BS01 rna ? GO:0000027 ... P0ADZ0 37537169
    876747 8syl:W (2.9) BS01 rna ? GO:0000027 ... P60624 37537169
    876748 8syl:X (2.9) BS01 rna ? GO:0000027 ... P68919 37537169
    876749 8syl:Y (2.9) BS01 rna ? GO:0000027 ... P0A7L8 37537169
    876750 8syl:Y (2.9) BS02 rna ? GO:0000027 ... P0A7L8 37537169
    876751 8syl:Y (2.9) BS03 rna ? GO:0000027 ... P0A7L8 37537169
    876752 8syl:Z (2.9) BS01 rna ? GO:0000027 ... P0A7M2 37537169
    876753 8syl:b (2.9) BS01 rna ? GO:0000028 ... P0A7V0 37537169
    876754 8syl:c (2.9) BS01 rna ? GO:0000028 ... P0A7V3 37537169
    876755 8syl:d (2.9) BS01 rna ? GO:0000028 ... P0A7V8 37537169
    876756 8syl:e (2.9) BS01 rna ? GO:0000028 ... P0A7W1 37537169
    876757 8syl:f (2.9) BS01 rna ? GO:0002181 ... P02358 37537169
    876758 8syl:g (2.9) BS01 rna ? GO:0003723 ... P02359 37537169
    876759 8syl:g (2.9) BS02 rna ? GO:0003723 ... P02359 37537169
    876760 8syl:h (2.9) BS01 rna ? GO:0000028 ... P0A7W7 37537169
    876761 8syl:i (2.9) BS01 rna ? GO:0000049 ... P0A7X3 37537169
    876762 8syl:i (2.9) BS02 rna ? GO:0000049 ... P0A7X3 37537169
    876763 8syl:j (2.9) BS01 rna ? GO:0000049 ... P0A7R5 37537169
    876764 8syl:k (2.9) BS01 rna ? GO:0002181 ... P0A7R9 37537169
    876765 8syl:l (2.9) BS01 rna ? GO:0000049 ... P0A7S3 37537169
    876766 8syl:l (2.9) BS02 rna ? GO:0000049 ... P0A7S3 37537169
    876767 8syl:m (2.9) BS01 rna ? GO:0000049 ... P0A7S9 37537169
    876768 8syl:m (2.9) BS02 rna ? GO:0000049 ... P0A7S9 37537169
    876769 8syl:n (2.9) BS01 rna ? GO:0000028 ... P0AG59 37537169
    876770 8syl:o (2.9) BS01 rna ? GO:0000028 ... P0ADZ4 37537169
    876771 8syl:o (2.9) BS02 rna ? GO:0000028 ... P0ADZ4 37537169
    876772 8syl:p (2.9) BS01 rna ? GO:0000028 ... P0A7T3 37537169
    876773 8syl:q (2.9) BS01 rna ? GO:0000028 ... P0AG63 37537169
    876774 8syl:r (2.9) BS01 rna ? GO:0002181 ... P0A7T7 37537169
    876775 8syl:s (2.9) BS01 rna ? GO:0000028 ... P0A7U3 37537169
    876776 8syl:t (2.9) BS01 rna ? GO:0000028 ... P0A7U7 37537169
    876777 8syl:u (2.9) BS01 rna ? GO:0000028 ... P68679 37537169
    876778 8syp:A (2.6) BS01 dna ? GO:0000786 ... P68431 38267599
    876779 8syp:A (2.6) BS02 dna ? GO:0000786 ... P68431 38267599
    876780 8syp:B (2.6) BS01 dna ? GO:0000781 ... P62805 38267599
    876781 8syp:B (2.6) BS02 dna ? GO:0000781 ... P62805 38267599
    876782 8syp:C (2.6) BS01 dna ? GO:0000786 ... Q16777 38267599
    876783 8syp:C (2.6) BS02 dna ? GO:0000786 ... Q16777 38267599
    876784 8syp:D (2.6) BS01 dna ? GO:0000786 ... Q16778 38267599
    876785 8syp:D (2.6) BS02 dna ? GO:0000786 ... Q16778 38267599
    876786 8syp:E (2.6) BS01 dna ? GO:0000786 ... P68431 38267599
    876787 8syp:E (2.6) BS02 dna ? GO:0000786 ... P68431 38267599
    876788 8syp:F (2.6) BS01 dna ? GO:0000781 ... P62805 38267599
    876789 8syp:F (2.6) BS02 dna ? GO:0000781 ... P62805 38267599
    876790 8syp:G (2.6) BS01 dna ? GO:0000786 ... Q16777 38267599
    876791 8syp:G (2.6) BS02 dna ? GO:0000786 ... Q16777 38267599
    876792 8syp:H (2.6) BS01 dna ? GO:0000786 ... Q16778 38267599
    876793 8syp:H (2.6) BS02 dna ? GO:0000786 ... Q16778 38267599
    876794 8sz2:A (2.01) BS01 peptide 3.2.2.22 N/A P09385 38467020
    876795 8sz2:B (2.01) BS01 peptide 3.2.2.22 N/A P09385 38467020
    876796 8sz3:A (2.32) BS01 X18 2.4.1.149 GO:0000139 ... Q9NY97 37988652
    876797 8sz3:B (2.32) BS01 X18 2.4.1.149 GO:0000139 ... Q9NY97 37988652
    876798 8sz6:A (1.65) BS01 ZKE 1.1.1.88 GO:0004420 ... P13702 38327055
    876799 8sz6:B (1.65) BS01 ZKE 1.1.1.88 GO:0004420 ... P13702 38327055
    876800 8sz6:B (1.65) BS02 XII 1.1.1.88 GO:0004420 ... P13702 38327055
    Reference:
  • Chengxin Zhang, Xi Zhang, Lydia Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).