SEQ2FUN

BioLiP
Download all results in tab-seperated text for 1072681 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
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  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.
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    # PDB
    (Resolution Å)
    Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    876801 8s35:D (2.9) BS02 dna N/A N/A A0A333ESG5 39468082
    876802 8s35:E (2.9) BS01 rna N/A N/A A0A333ESG5 39468082
    876803 8s35:F (2.9) BS01 rna N/A N/A N/A 39468082
    876804 8s35:F (2.9) BS02 dna N/A N/A N/A 39468082
    876805 8s35:F (2.9) BS03 dna N/A N/A N/A 39468082
    876806 8s35:G (2.9) BS01 dna N/A N/A A0A7Z7WW72 39468082
    876807 8s35:G (2.9) BS02 dna N/A N/A A0A7Z7WW72 39468082
    876808 8s35:G (2.9) BS03 ZN N/A N/A A0A7Z7WW72 39468082
    876809 8s35:L (2.9) BS01 rna N/A N/A A0A333ESG5 39468082
    876810 8s35:M (2.9) BS01 dna N/A GO:0003676 ... A0A422ZM74 39468082
    876811 8s36:A (2.9) BS01 rna N/A N/A A0A333ESG5 39468082
    876812 8s36:A (2.9) BS02 dna N/A N/A A0A333ESG5 39468082
    876813 8s36:A (2.9) BS03 dna N/A N/A A0A333ESG5 39468082
    876814 8s36:B (2.9) BS01 rna N/A N/A A0A333ESG5 39468082
    876815 8s36:B (2.9) BS02 dna N/A N/A A0A333ESG5 39468082
    876816 8s36:B (2.9) BS03 dna N/A N/A A0A333ESG5 39468082
    876817 8s36:C (2.9) BS01 rna N/A N/A A0A333ESG5 39468082
    876818 8s36:C (2.9) BS02 dna N/A N/A A0A333ESG5 39468082
    876819 8s36:D (2.9) BS01 rna N/A N/A A0A333ESG5 39468082
    876820 8s36:D (2.9) BS02 dna N/A N/A A0A333ESG5 39468082
    876821 8s36:E (2.9) BS01 rna N/A N/A A0A333ESG5 39468082
    876822 8s36:E (2.9) BS02 dna N/A N/A A0A333ESG5 39468082
    876823 8s36:F (2.9) BS01 rna N/A N/A N/A 39468082
    876824 8s36:F (2.9) BS02 dna N/A N/A N/A 39468082
    876825 8s36:F (2.9) BS03 dna N/A N/A N/A 39468082
    876826 8s36:G (2.9) BS01 dna N/A N/A A0A7Z7WW72 39468082
    876827 8s36:G (2.9) BS02 dna N/A N/A A0A7Z7WW72 39468082
    876828 8s36:G (2.9) BS03 ZN N/A N/A A0A7Z7WW72 39468082
    876829 8s36:L (2.9) BS01 rna N/A N/A A0A333ESG5 39468082
    876830 8s36:M (2.9) BS01 dna N/A GO:0003676 ... A0A422ZM74 39468082
    876831 8s37:A (2.9) BS01 rna N/A N/A A0A333ESG5 39468082
    876832 8s37:A (2.9) BS02 dna N/A N/A A0A333ESG5 39468082
    876833 8s37:A (2.9) BS03 dna N/A N/A A0A333ESG5 39468082
    876834 8s37:B (2.9) BS01 rna N/A N/A A0A333ESG5 39468082
    876835 8s37:B (2.9) BS02 dna N/A N/A A0A333ESG5 39468082
    876836 8s37:B (2.9) BS03 dna N/A N/A A0A333ESG5 39468082
    876837 8s37:C (2.9) BS01 rna N/A N/A A0A333ESG5 39468082
    876838 8s37:C (2.9) BS02 dna N/A N/A A0A333ESG5 39468082
    876839 8s37:D (2.9) BS01 rna N/A N/A A0A333ESG5 39468082
    876840 8s37:D (2.9) BS02 dna N/A N/A A0A333ESG5 39468082
    876841 8s37:E (2.9) BS01 rna N/A N/A A0A333ESG5 39468082
    876842 8s37:E (2.9) BS02 dna N/A N/A A0A333ESG5 39468082
    876843 8s37:F (2.9) BS01 rna N/A N/A N/A 39468082
    876844 8s37:F (2.9) BS02 dna N/A N/A N/A 39468082
    876845 8s37:F (2.9) BS03 dna N/A N/A N/A 39468082
    876846 8s37:G (2.9) BS01 dna N/A N/A A0A7Z7WW72 39468082
    876847 8s37:G (2.9) BS02 dna N/A N/A A0A7Z7WW72 39468082
    876848 8s37:G (2.9) BS03 ZN N/A N/A A0A7Z7WW72 39468082
    876849 8s37:L (2.9) BS01 rna N/A N/A A0A333ESG5 39468082
    876850 8s37:M (2.9) BS01 dna N/A GO:0003676 ... A0A422ZM74 39468082
    876851 8s38:A (1.89) BS01 NAD N/A GO:0004352 ... G7JYL4 39142482
    876852 8s38:B (1.89) BS01 CA N/A GO:0004352 ... G7JYL4 39142482
    876853 8s38:C (1.89) BS01 NAD N/A GO:0004352 ... G7JYL4 39142482
    876854 8s38:C (1.89) BS02 CA N/A GO:0004352 ... G7JYL4 39142482
    876855 8s39:A (2.0) BS01 NAD N/A GO:0004352 ... G7JYL4 39142482
    876856 8s39:A (2.0) BS02 CA N/A GO:0004352 ... G7JYL4 39142482
    876857 8s39:B (2.0) BS01 NAD N/A GO:0004352 ... G7JYL4 39142482
    876858 8s39:B (2.0) BS02 CA N/A GO:0004352 ... G7JYL4 39142482
    876859 8s39:C (2.0) BS01 NAD N/A GO:0004352 ... G7JYL4 39142482
    876860 8s39:C (2.0) BS02 8G0 N/A GO:0004352 ... G7JYL4 39142482
    876861 8s3a:A (1.85) BS01 NAD N/A GO:0004352 ... G7JYL4 39142482
    876862 8s3a:B (1.85) BS01 NAD N/A GO:0004352 ... G7JYL4 39142482
    876863 8s3a:C (1.85) BS01 NAD N/A GO:0004352 ... G7JYL4 39142482
    876864 8s3a:D (1.85) BS01 NAD N/A GO:0004352 ... G7JYL4 39142482
    876865 8s3a:E (1.85) BS01 PDC N/A GO:0004352 ... G7JYL4 39142482
    876866 8s3a:E (1.85) BS02 NAD N/A GO:0004352 ... G7JYL4 39142482
    876867 8s3a:F (1.85) BS01 PDC N/A GO:0004352 ... G7JYL4 39142482
    876868 8s3a:F (1.85) BS02 NAD N/A GO:0004352 ... G7JYL4 39142482
    876869 8s3b:A (2.3) BS01 A1H40 N/A GO:0004352 ... G7JYL4 39142482
    876870 8s3b:A (2.3) BS02 NAD N/A GO:0004352 ... G7JYL4 39142482
    876871 8s3b:A (2.3) BS03 CA N/A GO:0004352 ... G7JYL4 39142482
    876872 8s3b:B (2.3) BS01 A1H40 N/A GO:0004352 ... G7JYL4 39142482
    876873 8s3b:B (2.3) BS02 NAD N/A GO:0004352 ... G7JYL4 39142482
    876874 8s3b:B (2.3) BS03 CA N/A GO:0004352 ... G7JYL4 39142482
    876875 8s3b:C (2.3) BS01 A1H40 N/A GO:0004352 ... G7JYL4 39142482
    876876 8s3b:C (2.3) BS02 NAD N/A GO:0004352 ... G7JYL4 39142482
    876877 8s3b:C (2.3) BS03 CA N/A GO:0004352 ... G7JYL4 39142482
    876878 8s3b:D (2.3) BS01 A1H40 N/A GO:0004352 ... G7JYL4 39142482
    876879 8s3b:D (2.3) BS02 NAD N/A GO:0004352 ... G7JYL4 39142482
    876880 8s3b:D (2.3) BS03 CA N/A GO:0004352 ... G7JYL4 39142482
    876881 8s3b:E (2.3) BS01 NAD N/A GO:0004352 ... G7JYL4 39142482
    876882 8s3b:E (2.3) BS02 CA N/A GO:0004352 ... G7JYL4 39142482
    876883 8s3b:F (2.3) BS01 NAD N/A GO:0004352 ... G7JYL4 39142482
    876884 8s3b:F (2.3) BS02 CA N/A GO:0004352 ... G7JYL4 39142482
    876885 8s3b:G (2.3) BS01 NAD N/A GO:0004352 ... G7JYL4 39142482
    876886 8s3b:G (2.3) BS02 CA N/A GO:0004352 ... G7JYL4 39142482
    876887 8s3b:H (2.3) BS01 A1H40 N/A GO:0004352 ... G7JYL4 39142482
    876888 8s3b:H (2.3) BS02 NAD N/A GO:0004352 ... G7JYL4 39142482
    876889 8s3b:H (2.3) BS03 CA N/A GO:0004352 ... G7JYL4 39142482
    876890 8s3b:I (2.3) BS01 NAD N/A GO:0004352 ... G7JYL4 39142482
    876891 8s3b:I (2.3) BS02 CA N/A GO:0004352 ... G7JYL4 39142482
    876892 8s3b:J (2.3) BS01 NAD N/A GO:0004352 ... G7JYL4 39142482
    876893 8s3b:J (2.3) BS02 CA N/A GO:0004352 ... G7JYL4 39142482
    876894 8s3b:K (2.3) BS01 A1H40 N/A GO:0004352 ... G7JYL4 39142482
    876895 8s3b:K (2.3) BS02 NAD N/A GO:0004352 ... G7JYL4 39142482
    876896 8s3b:K (2.3) BS03 CA N/A GO:0004352 ... G7JYL4 39142482
    876897 8s3b:L (2.3) BS01 NAD N/A GO:0004352 ... G7JYL4 39142482
    876898 8s3b:L (2.3) BS02 CA N/A GO:0004352 ... G7JYL4 39142482
    876899 8s3c:B (2.2) BS01 CA N/A GO:0004352 ... G7JYL4 39142482
    876900 8s3d:A (1.65) BS01 NAD N/A GO:0004352 ... G7JYL4 39142482
    876901 8s3d:A (1.65) BS02 8GL N/A GO:0004352 ... G7JYL4 39142482
    876902 8s3d:A (1.65) BS03 CA N/A GO:0004352 ... G7JYL4 39142482
    876903 8s3d:A (1.65) BS04 GLY N/A GO:0004352 ... G7JYL4 39142482
    876904 8s3d:B (1.65) BS01 NAD N/A GO:0004352 ... G7JYL4 39142482
    876905 8s3d:B (1.65) BS02 8GL N/A GO:0004352 ... G7JYL4 39142482
    876906 8s3d:B (1.65) BS03 GLY N/A GO:0004352 ... G7JYL4 39142482
    876907 8s3d:B (1.65) BS04 CA N/A GO:0004352 ... G7JYL4 39142482
    876908 8s3d:C (1.65) BS01 NAD N/A GO:0004352 ... G7JYL4 39142482
    876909 8s3d:C (1.65) BS02 8GL N/A GO:0004352 ... G7JYL4 39142482
    876910 8s3d:C (1.65) BS03 GLY N/A GO:0004352 ... G7JYL4 39142482
    876911 8s3d:C (1.65) BS04 CA N/A GO:0004352 ... G7JYL4 39142482
    876912 8s3d:D (1.65) BS01 NAD N/A GO:0004352 ... G7JYL4 39142482
    876913 8s3d:D (1.65) BS02 8GL N/A GO:0004352 ... G7JYL4 39142482
    876914 8s3d:D (1.65) BS03 CA N/A GO:0004352 ... G7JYL4 39142482
    876915 8s3d:D (1.65) BS04 GLY N/A GO:0004352 ... G7JYL4 39142482
    876916 8s3d:E (1.65) BS01 NAD N/A GO:0004352 ... G7JYL4 39142482
    876917 8s3d:E (1.65) BS02 8GL N/A GO:0004352 ... G7JYL4 39142482
    876918 8s3d:E (1.65) BS03 GLY N/A GO:0004352 ... G7JYL4 39142482
    876919 8s3d:E (1.65) BS04 CA N/A GO:0004352 ... G7JYL4 39142482
    876920 8s3d:F (1.65) BS01 NAD N/A GO:0004352 ... G7JYL4 39142482
    876921 8s3d:F (1.65) BS02 8GL N/A GO:0004352 ... G7JYL4 39142482
    876922 8s3d:F (1.65) BS03 CA N/A GO:0004352 ... G7JYL4 39142482
    876923 8s3d:F (1.65) BS04 GLY N/A GO:0004352 ... G7JYL4 39142482
    876924 8s3e:A (2.39) BS01 CLR ? GO:0005216 ... Q9BG98 38553946
    876925 8s3e:A (2.39) BS02 CLR ? GO:0005216 ... Q9BG98 38553946
    876926 8s3e:A (2.39) BS03 CA ? GO:0005216 ... Q9BG98 38553946
    876927 8s3e:A (2.39) BS04 CA ? GO:0005216 ... Q9BG98 38553946
    876928 8s3e:A (2.39) BS05 MG ? GO:0005216 ... Q9BG98 38553946
    876929 8s3e:B (2.39) BS01 MG ? GO:0005216 ... Q9BG98 38553946
    876930 8s3e:B (2.39) BS02 CLR ? GO:0005216 ... Q9BG98 38553946
    876931 8s3e:B (2.39) BS03 CLR ? GO:0005216 ... Q9BG98 38553946
    876932 8s3e:B (2.39) BS04 CA ? GO:0005216 ... Q9BG98 38553946
    876933 8s3e:B (2.39) BS05 CA ? GO:0005216 ... Q9BG98 38553946
    876934 8s3e:C (2.39) BS01 MG ? GO:0005216 ... Q9BG98 38553946
    876935 8s3e:C (2.39) BS02 CLR ? GO:0005216 ... Q9BG98 38553946
    876936 8s3e:C (2.39) BS03 CLR ? GO:0005216 ... Q9BG98 38553946
    876937 8s3e:C (2.39) BS04 CA ? GO:0005216 ... Q9BG98 38553946
    876938 8s3e:C (2.39) BS05 CA ? GO:0005216 ... Q9BG98 38553946
    876939 8s3e:D (2.39) BS01 MG ? GO:0005216 ... Q9BG98 38553946
    876940 8s3e:D (2.39) BS02 CLR ? GO:0005216 ... Q9BG98 38553946
    876941 8s3e:D (2.39) BS03 CLR ? GO:0005216 ... Q9BG98 38553946
    876942 8s3e:D (2.39) BS04 CA ? GO:0005216 ... Q9BG98 38553946
    876943 8s3e:D (2.39) BS05 CA ? GO:0005216 ... Q9BG98 38553946
    876944 8s3f:A (1.76) BS01 CU N/A GO:0005576 ... A0A0S2GKZ1 40424050
    876945 8s3l:A (2.6) BS01 BGC N/A GO:0005576 ... A0A0S2GKZ1 40424050
    876946 8s3l:A (2.6) BS02 BGC N/A GO:0005576 ... A0A0S2GKZ1 40424050
    876947 8s3l:A (2.6) BS03 BGC N/A GO:0005576 ... A0A0S2GKZ1 40424050
    876948 8s3l:A (2.6) BS04 BGC N/A GO:0005576 ... A0A0S2GKZ1 40424050
    876949 8s3l:A (2.6) BS05 CL N/A GO:0005576 ... A0A0S2GKZ1 40424050
    876950 8s3l:A (2.6) BS06 CU N/A GO:0005576 ... A0A0S2GKZ1 40424050
    876951 8s3m:A (2.198) BS01 peptide N/A GO:0003824 ... A0MNG2 40580998
    876952 8s3m:A (2.198) BS02 ZN N/A GO:0003824 ... A0MNG2 40580998
    876953 8s3m:A (2.198) BS03 PO4 N/A GO:0003824 ... A0MNG2 40580998
    876954 8s3r:A (2.28) BS01 A1H48 N/A GO:0001779 ... O00329 38907711
    876955 8s3u:A (2.301) BS01 peptide N/A GO:0003824 ... A0MNG2 40580998
    876956 8s3u:A (2.301) BS02 ZN N/A GO:0003824 ... A0MNG2 40580998
    876957 8s3u:A (2.301) BS03 PO4 N/A GO:0003824 ... A0MNG2 40580998
    876958 8s3w:A (2.394) BS01 peptide N/A GO:0003824 ... A0MNG2 40580998
    876959 8s3w:A (2.394) BS02 ZN N/A GO:0003824 ... A0MNG2 40580998
    876960 8s3w:A (2.394) BS03 PO4 N/A GO:0003824 ... A0MNG2 40580998
    876961 8s3x:A (2.59) BS01 A1H41 2.7.11.1 GO:0004672 ... P53671 38669909
    876962 8s3x:B (2.59) BS01 A1H41 2.7.11.1 GO:0004672 ... P53671 38669909
    876963 8s3x:C (2.59) BS01 A1H41 2.7.11.1 GO:0004672 ... P53671 38669909
    876964 8s3x:D (2.59) BS01 A1H41 2.7.11.1 GO:0004672 ... P53671 38669909
    876965 8s42:B (1.7) BS01 peptide N/A GO:0001836 ... P31947 41617210
    876966 8s42:B (1.7) BS02 A1H5F N/A GO:0001836 ... P31947 41617210
    876967 8s45:B (1.69) BS01 G3Y N/A GO:0004016 ... Q8Y5E4 N/A
    876968 8s46:B (1.99) BS01 F06 N/A GO:0004016 ... Q8Y5E4 N/A
    876969 8s47:A (2.11) BS01 47U N/A GO:0004016 ... Q8Y5E4 N/A
    876970 8s47:B (2.11) BS01 47U N/A GO:0004016 ... Q8Y5E4 N/A
    876971 8s48:B (1.65) BS01 4AQ N/A GO:0004016 ... Q8Y5E4 N/A
    876972 8s49:B (1.7) BS01 45Y N/A GO:0004016 ... Q8Y5E4 N/A
    876973 8s4a:A (2.23) BS01 AJO N/A GO:0004016 ... Q8Y5E4 N/A
    876974 8s4a:B (2.23) BS01 AJO N/A GO:0004016 ... Q8Y5E4 N/A
    876975 8s4b:B (2.15) BS01 8G2 N/A GO:0004016 ... Q8Y5E4 N/A
    876976 8s4d:A (2.584) BS01 A1D5N N/A GO:0004930 ... P0ABE7
    P35414
    39730334
    876977 8s4f:A (1.39) BS01 ZN N/A GO:0004064 ... P00915 39688904
    876978 8s4f:A (1.39) BS02 VV8 N/A GO:0004064 ... P00915 39688904
    876979 8s4f:B (1.39) BS01 ZN N/A GO:0004064 ... P00915 39688904
    876980 8s4f:B (1.39) BS02 VV8 N/A GO:0004064 ... P00915 39688904
    876981 8s4g:C () BS01 ZN ? N/A N/A N/A
    876982 8s4g:C () BS02 ZN ? N/A N/A N/A
    876983 8s4g:C () BS03 ZN ? N/A N/A N/A
    876984 8s4g:K () BS01 peptide ? N/A N/A N/A
    876985 8s4g:N () BS01 ZN ? N/A N/A N/A
    876986 8s4g:Q () BS01 peptide ? N/A N/A N/A
    876987 8s4g:S () BS01 ZN ? N/A N/A N/A
    876988 8s4g:S () BS02 ZN ? N/A N/A N/A
    876989 8s4h:A (1.7) BS01 RBR N/A N/A N/A 39259810
    876990 8s4h:B (1.7) BS01 RBR N/A N/A N/A 39259810
    876991 8s4h:C (1.7) BS01 RBR N/A N/A N/A 39259810
    876992 8s4h:D (1.7) BS01 RBR N/A N/A N/A 39259810
    876993 8s4h:H (1.7) BS01 RBR N/A N/A N/A 39259810
    876994 8s4h:L (1.7) BS01 RBR N/A N/A N/A 39259810
    876995 8s4j:A (1.7) BS01 GLU N/A N/A A0A0H6LKE4 39556531
    876996 8s4k:H (1.6) BS01 RBR N/A N/A N/A 39259810
    876997 8s4k:L (1.6) BS01 RBR N/A N/A N/A 39259810
    876998 8s4m:A (2.1) BS01 HEM N/A GO:0004497 ... P9WPP1 40653654
    876999 8s4m:B (2.1) BS01 HEM N/A GO:0004497 ... P9WPP1 40653654
    877000 8s4m:C (2.1) BS01 HEM N/A GO:0004497 ... P9WPP1 40653654

    Reference:
  • Chengxin Zhang, Xi Zhang, Lydia Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).