SEQ2FUN

BioLiP
Download all results in tab-seperated text for 942758 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    877201 8t2u:B (3.1) BS03 CA ? GO:0001618 ... P05106 37443315
    877202 8t2u:B (3.1) BS04 CA ? GO:0001618 ... P05106 37443315
    877203 8t2v:A (3.4) BS01 CA ? GO:0001525 ... P08514 37443315
    877204 8t2v:A (3.4) BS02 CA ? GO:0001525 ... P08514 37443315
    877205 8t2v:A (3.4) BS03 CA ? GO:0001525 ... P08514 37443315
    877206 8t2v:A (3.4) BS04 CA ? GO:0001525 ... P08514 37443315
    877207 8t2v:A (3.4) BS05 CA ? GO:0001525 ... P08514 37443315
    877208 8t2v:B (3.4) BS01 MG ? GO:0001618 ... P05106 37443315
    877209 8t2v:B (3.4) BS02 CA ? GO:0001618 ... P05106 37443315
    877210 8t2v:B (3.4) BS03 CA ? GO:0001618 ... P05106 37443315
    877211 8t2x:AA (2.46) BS01 rna N/A GO:0002181 ... P0CX45 N/A
    877212 8t2x:AB (2.46) BS01 rna N/A GO:0000027 ... P14126 N/A
    877213 8t2x:AC (2.46) BS01 rna N/A N/A P10664 N/A
    877214 8t2x:AC (2.46) BS02 rna N/A N/A P10664 N/A
    877215 8t2x:AD (2.46) BS01 rna N/A N/A P26321 N/A
    877216 8t2x:AD (2.46) BS02 rna N/A N/A P26321 N/A
    877217 8t2x:AE (2.46) BS01 rna N/A GO:0000027 ... Q02326 N/A
    877218 8t2x:AF (2.46) BS01 rna N/A GO:0000463 ... P05737 N/A
    877219 8t2x:AF (2.46) BS02 rna N/A GO:0000463 ... P05737 N/A
    877220 8t2x:AG (2.46) BS01 rna N/A GO:0000470 ... P17076 N/A
    877221 8t2x:AG (2.46) BS02 rna N/A GO:0000470 ... P17076 N/A
    877222 8t2x:AH (2.46) BS01 rna N/A GO:0002181 ... P05738 N/A
    877223 8t2x:AI (2.46) BS01 rna N/A N/A P41805 N/A
    877224 8t2x:AI (2.46) BS02 rna N/A N/A P41805 N/A
    877225 8t2x:AI (2.46) BS03 rna N/A N/A P41805 N/A
    877226 8t2x:AI (2.46) BS04 rna N/A N/A P41805 N/A
    877227 8t2x:AJ (2.46) BS01 rna N/A N/A P0C0W9 N/A
    877228 8t2x:AJ (2.46) BS02 rna N/A N/A P0C0W9 N/A
    877229 8t2x:AJ (2.46) BS03 rna N/A N/A P0C0W9 N/A
    877230 8t2x:AL (2.46) BS01 rna N/A GO:0002181 ... Q12690 N/A
    877231 8t2x:AL (2.46) BS02 rna N/A GO:0002181 ... Q12690 N/A
    877232 8t2x:AM (2.46) BS01 rna N/A GO:0000027 ... P36105 N/A
    877233 8t2x:AN (2.46) BS01 rna N/A GO:0002181 ... P05748 N/A
    877234 8t2x:AN (2.46) BS02 rna N/A GO:0002181 ... P05748 N/A
    877235 8t2x:AO (2.46) BS01 rna N/A GO:0000470 ... P26784 N/A
    877236 8t2x:AP (2.46) BS01 rna N/A GO:0000448 ... P05740 N/A
    877237 8t2x:AP (2.46) BS02 rna N/A GO:0000448 ... P05740 N/A
    877238 8t2x:AQ (2.46) BS01 rna N/A GO:0002181 ... P0CX49 N/A
    877239 8t2x:AR (2.46) BS01 rna N/A GO:0002181 ... P0CX82 N/A
    877240 8t2x:AR (2.46) BS02 rna N/A GO:0002181 ... P0CX82 N/A
    877241 8t2x:AS (2.46) BS01 rna N/A GO:0005840 ... P0CX23 N/A
    877242 8t2x:AS (2.46) BS02 rna N/A GO:0005840 ... P0CX23 N/A
    877243 8t2x:AT (2.46) BS01 rna N/A GO:0002181 ... Q02753 N/A
    877244 8t2x:AT (2.46) BS02 rna N/A GO:0002181 ... Q02753 N/A
    877245 8t2x:AU (2.46) BS01 rna N/A GO:0002181 ... P05749 N/A
    877246 8t2x:AV (2.46) BS01 rna N/A GO:0002181 ... P0CX41 N/A
    877247 8t2x:AV (2.46) BS02 rna N/A GO:0002181 ... P0CX41 N/A
    877248 8t2x:AW (2.46) BS01 rna N/A N/A P04449 N/A
    877249 8t2x:AX (2.46) BS01 rna N/A GO:0000027 ... P04456 N/A
    877250 8t2x:AX (2.46) BS02 rna N/A GO:0000027 ... P04456 N/A
    877251 8t2x:AY (2.46) BS01 rna N/A GO:0002181 ... P05743 N/A
    877252 8t2x:AY (2.46) BS02 rna N/A GO:0002181 ... P05743 N/A
    877253 8t2x:AZ (2.46) BS01 rna N/A GO:0002181 ... P0C2H6 N/A
    877254 8t2x:Aa (2.46) BS01 rna N/A GO:0002181 ... P02406 N/A
    877255 8t2x:Ab (2.46) BS01 rna N/A N/A P05747 N/A
    877256 8t2x:Ac (2.46) BS01 rna N/A GO:0002181 ... P14120 N/A
    877257 8t2x:Ad (2.46) BS01 rna N/A GO:0002181 ... P0C2H8 N/A
    877258 8t2x:Ae (2.46) BS01 rna N/A N/A P38061 N/A
    877259 8t2x:Af (2.46) BS01 rna N/A GO:0000027 ... P05744 N/A
    877260 8t2x:Ag (2.46) BS01 rna N/A GO:0002181 ... P87262 N/A
    877261 8t2x:Ah (2.46) BS01 rna N/A GO:0000463 ... P0CX84 N/A
    877262 8t2x:Ah (2.46) BS02 rna N/A GO:0000463 ... P0CX84 N/A
    877263 8t2x:Ai (2.46) BS01 rna N/A GO:0002181 ... P05745 N/A
    877264 8t2x:Aj (2.46) BS01 rna N/A GO:0000448 ... P49166 N/A
    877265 8t2x:Aj (2.46) BS02 rna N/A GO:0000448 ... P49166 N/A
    877266 8t2x:Ak (2.46) BS01 rna N/A N/A P49167 N/A
    877267 8t2x:Al (2.46) BS01 rna N/A GO:0002181 ... P04650 N/A
    877268 8t2x:Al (2.46) BS02 rna N/A GO:0002181 ... P04650 N/A
    877269 8t2x:Am (2.46) BS01 rna N/A GO:0000027 ... P0CH08 N/A
    877270 8t2x:Ao (2.46) BS01 rna N/A GO:0002181 ... P0CX27 N/A
    877271 8t2x:Ao (2.46) BS02 rna N/A GO:0002181 ... P0CX27 N/A
    877272 8t2x:Ao (2.46) BS03 ZN N/A GO:0002181 ... P0CX27 N/A
    877273 8t2x:Ap (2.46) BS01 rna N/A GO:0002181 ... P0CX25 N/A
    877274 8t2x:BA (2.46) BS01 rna N/A GO:0000028 ... P32905 N/A
    877275 8t2x:BB (2.46) BS01 rna N/A N/A P33442 N/A
    877276 8t2x:BC (2.46) BS01 rna N/A N/A P25443 N/A
    877277 8t2x:BD (2.46) BS01 rna N/A N/A P05750 N/A
    877278 8t2x:BE (2.46) BS01 rna N/A GO:0002181 ... P0CX35 N/A
    877279 8t2x:BF (2.46) BS01 rna N/A GO:0005840 ... P26783 N/A
    877280 8t2x:BF (2.46) BS02 rna N/A GO:0005840 ... P26783 N/A
    877281 8t2x:BG (2.46) BS01 rna N/A GO:0000462 ... P0CX37 N/A
    877282 8t2x:BH (2.46) BS01 rna N/A GO:0002181 ... P26786 N/A
    877283 8t2x:BI (2.46) BS01 rna N/A GO:0000462 ... P0CX39 N/A
    877284 8t2x:BI (2.46) BS02 rna N/A GO:0000462 ... P0CX39 N/A
    877285 8t2x:BJ (2.46) BS01 rna N/A GO:0000462 ... O13516 N/A
    877286 8t2x:BK (2.46) BS01 rna N/A GO:0000054 ... Q08745 N/A
    877287 8t2x:BL (2.46) BS01 rna N/A GO:0000028 ... P0CX47 N/A
    877288 8t2x:BM (2.46) BS01 rna N/A N/A P48589 N/A
    877289 8t2x:BN (2.46) BS01 rna N/A GO:0000462 ... P05756 N/A
    877290 8t2x:BN (2.46) BS02 rna N/A GO:0000462 ... P05756 N/A
    877291 8t2x:BO (2.46) BS01 rna N/A GO:0000028 ... P06367 N/A
    877292 8t2x:BP (2.46) BS01 rna N/A N/A Q01855 N/A
    877293 8t2x:BQ (2.46) BS01 rna N/A GO:0000462 ... P0CX51 N/A
    877294 8t2x:BR (2.46) BS01 rna N/A GO:0000028 ... P02407 N/A
    877295 8t2x:BS (2.46) BS01 rna N/A GO:0000054 ... P0CX55 N/A
    877296 8t2x:BT (2.46) BS01 rna N/A GO:0000028 ... P07280 N/A
    877297 8t2x:BU (2.46) BS01 rna N/A N/A P38701 N/A
    877298 8t2x:BV (2.46) BS01 rna N/A GO:0000447 ... P0C0V8 N/A
    877299 8t2x:BW (2.46) BS01 rna N/A N/A P0C0W1 N/A
    877300 8t2x:BX (2.46) BS01 rna N/A GO:0000462 ... P0CX29 N/A
    877301 8t2x:BY (2.46) BS01 rna N/A GO:0000462 ... P0CX31 N/A
    877302 8t2x:BZ (2.46) BS01 rna N/A N/A Q3E792 N/A
    877303 8t2x:BZ (2.46) BS02 rna N/A N/A Q3E792 N/A
    877304 8t2x:BZ (2.46) BS03 rna N/A N/A Q3E792 N/A
    877305 8t2x:Ba (2.46) BS01 rna N/A N/A P39939 N/A
    877306 8t2x:Bb (2.46) BS01 rna N/A GO:0000028 ... P35997 N/A
    877307 8t2x:Bc (2.46) BS01 rna N/A N/A Q3E7X9 N/A
    877308 8t2x:Bd (2.46) BS01 rna N/A N/A P41057 N/A
    877309 8t2x:Be (2.46) BS01 rna N/A GO:0002181 ... P0CX33 N/A
    877310 8t2x:Bf (2.46) BS01 rna N/A N/A P05759 N/A
    877311 8t2x:Bg (2.46) BS01 rna N/A GO:0001965 ... P38011 N/A
    877312 8t2x:E (2.46) BS01 rna N/A N/A P0CX43 N/A
    877313 8t2x:eI (2.46) BS01 rna N/A N/A N/A N/A
    877314 8t2x:eI (2.46) BS02 rna N/A N/A N/A N/A
    877315 8t2y:AA (2.2) BS01 rna N/A GO:0002181 ... P0CX45 N/A
    877316 8t2y:AB (2.2) BS01 rna N/A GO:0000027 ... P14126 N/A
    877317 8t2y:AC (2.2) BS01 rna N/A N/A P10664 N/A
    877318 8t2y:AC (2.2) BS02 rna N/A N/A P10664 N/A
    877319 8t2y:AD (2.2) BS01 rna N/A N/A P26321 N/A
    877320 8t2y:AD (2.2) BS02 rna N/A N/A P26321 N/A
    877321 8t2y:AE (2.2) BS01 rna N/A GO:0000027 ... Q02326 N/A
    877322 8t2y:AF (2.2) BS01 rna N/A GO:0000463 ... P05737 N/A
    877323 8t2y:AF (2.2) BS02 rna N/A GO:0000463 ... P05737 N/A
    877324 8t2y:AG (2.2) BS01 rna N/A GO:0000470 ... P17076 N/A
    877325 8t2y:AG (2.2) BS02 rna N/A GO:0000470 ... P17076 N/A
    877326 8t2y:AH (2.2) BS01 rna N/A GO:0002181 ... P05738 N/A
    877327 8t2y:AI (2.2) BS01 rna N/A N/A P41805 N/A
    877328 8t2y:AI (2.2) BS02 rna N/A N/A P41805 N/A
    877329 8t2y:AI (2.2) BS03 rna N/A N/A P41805 N/A
    877330 8t2y:AI (2.2) BS04 rna N/A N/A P41805 N/A
    877331 8t2y:AJ (2.2) BS01 rna N/A N/A P0C0W9 N/A
    877332 8t2y:AJ (2.2) BS02 rna N/A N/A P0C0W9 N/A
    877333 8t2y:AJ (2.2) BS03 rna N/A N/A P0C0W9 N/A
    877334 8t2y:AL (2.2) BS01 rna N/A GO:0002181 ... Q12690 N/A
    877335 8t2y:AL (2.2) BS02 rna N/A GO:0002181 ... Q12690 N/A
    877336 8t2y:AM (2.2) BS01 rna N/A GO:0000027 ... P36105 N/A
    877337 8t2y:AN (2.2) BS01 rna N/A GO:0002181 ... P05748 N/A
    877338 8t2y:AN (2.2) BS02 rna N/A GO:0002181 ... P05748 N/A
    877339 8t2y:AO (2.2) BS01 rna N/A GO:0000470 ... P26784 N/A
    877340 8t2y:AP (2.2) BS01 rna N/A GO:0000448 ... P05740 N/A
    877341 8t2y:AP (2.2) BS02 rna N/A GO:0000448 ... P05740 N/A
    877342 8t2y:AP (2.2) BS03 MG N/A GO:0000448 ... P05740 N/A
    877343 8t2y:AQ (2.2) BS01 rna N/A GO:0002181 ... P0CX49 N/A
    877344 8t2y:AR (2.2) BS01 rna N/A GO:0002181 ... P0CX82 N/A
    877345 8t2y:AR (2.2) BS02 rna N/A GO:0002181 ... P0CX82 N/A
    877346 8t2y:AS (2.2) BS01 rna N/A GO:0005840 ... P0CX23 N/A
    877347 8t2y:AS (2.2) BS02 rna N/A GO:0005840 ... P0CX23 N/A
    877348 8t2y:AT (2.2) BS01 rna N/A GO:0002181 ... Q02753 N/A
    877349 8t2y:AT (2.2) BS02 rna N/A GO:0002181 ... Q02753 N/A
    877350 8t2y:AU (2.2) BS01 rna N/A GO:0002181 ... P05749 N/A
    877351 8t2y:AV (2.2) BS01 rna N/A GO:0002181 ... P0CX41 N/A
    877352 8t2y:AV (2.2) BS02 rna N/A GO:0002181 ... P0CX41 N/A
    877353 8t2y:AW (2.2) BS01 rna N/A N/A P04449 N/A
    877354 8t2y:AX (2.2) BS01 rna N/A GO:0000027 ... P04456 N/A
    877355 8t2y:AX (2.2) BS02 rna N/A GO:0000027 ... P04456 N/A
    877356 8t2y:AY (2.2) BS01 rna N/A GO:0002181 ... P05743 N/A
    877357 8t2y:AY (2.2) BS02 rna N/A GO:0002181 ... P05743 N/A
    877358 8t2y:AZ (2.2) BS01 rna N/A GO:0002181 ... P0C2H6 N/A
    877359 8t2y:Aa (2.2) BS01 rna N/A GO:0002181 ... P02406 N/A
    877360 8t2y:Ab (2.2) BS01 rna N/A N/A P05747 N/A
    877361 8t2y:Ac (2.2) BS01 rna N/A GO:0002181 ... P14120 N/A
    877362 8t2y:Ad (2.2) BS01 rna N/A GO:0002181 ... P0C2H8 N/A
    877363 8t2y:Ae (2.2) BS01 rna N/A N/A P38061 N/A
    877364 8t2y:Af (2.2) BS01 rna N/A GO:0000027 ... P05744 N/A
    877365 8t2y:Ag (2.2) BS01 rna N/A GO:0002181 ... P87262 N/A
    877366 8t2y:Ah (2.2) BS01 rna N/A GO:0000463 ... P0CX84 N/A
    877367 8t2y:Ah (2.2) BS02 rna N/A GO:0000463 ... P0CX84 N/A
    877368 8t2y:Ai (2.2) BS01 rna N/A GO:0002181 ... P05745 N/A
    877369 8t2y:Aj (2.2) BS01 rna N/A GO:0000448 ... P49166 N/A
    877370 8t2y:Aj (2.2) BS02 rna N/A GO:0000448 ... P49166 N/A
    877371 8t2y:Ak (2.2) BS01 rna N/A N/A P49167 N/A
    877372 8t2y:Al (2.2) BS01 rna N/A GO:0002181 ... P04650 N/A
    877373 8t2y:Al (2.2) BS02 rna N/A GO:0002181 ... P04650 N/A
    877374 8t2y:Am (2.2) BS01 rna N/A GO:0000027 ... P0CH08 N/A
    877375 8t2y:Ao (2.2) BS01 rna N/A GO:0002181 ... P0CX27 N/A
    877376 8t2y:Ao (2.2) BS02 rna N/A GO:0002181 ... P0CX27 N/A
    877377 8t2y:Ao (2.2) BS03 ZN N/A GO:0002181 ... P0CX27 N/A
    877378 8t2y:Ap (2.2) BS01 rna N/A GO:0002181 ... P0CX25 N/A
    877379 8t2y:BA (2.2) BS01 rna N/A GO:0000028 ... P32905 N/A
    877380 8t2y:BB (2.2) BS01 rna N/A N/A P33442 N/A
    877381 8t2y:BC (2.2) BS01 rna N/A N/A P25443 N/A
    877382 8t2y:BD (2.2) BS01 rna N/A N/A P05750 N/A
    877383 8t2y:BE (2.2) BS01 rna N/A GO:0002181 ... P0CX35 N/A
    877384 8t2y:BF (2.2) BS01 rna N/A GO:0005840 ... P26783 N/A
    877385 8t2y:BF (2.2) BS02 rna N/A GO:0005840 ... P26783 N/A
    877386 8t2y:BG (2.2) BS01 rna N/A GO:0000462 ... P0CX37 N/A
    877387 8t2y:BH (2.2) BS01 rna N/A GO:0002181 ... P26786 N/A
    877388 8t2y:BI (2.2) BS01 rna N/A GO:0000462 ... P0CX39 N/A
    877389 8t2y:BI (2.2) BS02 rna N/A GO:0000462 ... P0CX39 N/A
    877390 8t2y:BJ (2.2) BS01 rna N/A GO:0000462 ... O13516 N/A
    877391 8t2y:BK (2.2) BS01 rna N/A GO:0000054 ... Q08745 N/A
    877392 8t2y:BL (2.2) BS01 rna N/A GO:0000028 ... P0CX47 N/A
    877393 8t2y:BM (2.2) BS01 rna N/A N/A P48589 N/A
    877394 8t2y:BN (2.2) BS01 rna N/A GO:0000462 ... P05756 N/A
    877395 8t2y:BN (2.2) BS02 rna N/A GO:0000462 ... P05756 N/A
    877396 8t2y:BO (2.2) BS01 rna N/A GO:0000028 ... P06367 N/A
    877397 8t2y:BP (2.2) BS01 rna N/A N/A Q01855 N/A
    877398 8t2y:BQ (2.2) BS01 rna N/A GO:0000462 ... P0CX51 N/A
    877399 8t2y:BR (2.2) BS01 rna N/A GO:0000028 ... P02407 N/A
    877400 8t2y:BS (2.2) BS01 rna N/A GO:0000054 ... P0CX55 N/A
    Reference:
  • Chengxin Zhang, Xi Zhang, Lydia Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).