SEQ2FUN

BioLiP
Download all results in tab-seperated text for 1072681 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.
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    # PDB
    (Resolution Å)
    Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    877201 8s5m:J (4.0) BS01 SAM 4.2.1.22 GO:0004122 ... P35520 38575566
    877202 8s5m:J (4.0) BS02 SAM 4.2.1.22 GO:0004122 ... P35520 38575566
    877203 8s5n:A (3.4) BS01 dna 2.7.7.6 GO:0001172 ... A0A7M4DUC2 38604172
    877204 8s5n:A (3.4) BS02 rna 2.7.7.6 GO:0001172 ... A0A7M4DUC2 38604172
    877205 8s5n:A (3.4) BS03 dna 2.7.7.6 GO:0001172 ... A0A7M4DUC2 38604172
    877206 8s5n:A (3.4) BS04 ZN 2.7.7.6 GO:0001172 ... A0A7M4DUC2 38604172
    877207 8s5n:A (3.4) BS05 ZN 2.7.7.6 GO:0001172 ... A0A7M4DUC2 38604172
    877208 8s5n:A (3.4) BS06 MG 2.7.7.6 GO:0001172 ... A0A7M4DUC2 38604172
    877209 8s5n:B (3.4) BS01 dna 2.7.7.6 GO:0000781 ... I3LGP4 38604172
    877210 8s5n:B (3.4) BS02 rna 2.7.7.6 GO:0000781 ... I3LGP4 38604172
    877211 8s5n:B (3.4) BS03 dna 2.7.7.6 GO:0000781 ... I3LGP4 38604172
    877212 8s5n:B (3.4) BS04 ZN 2.7.7.6 GO:0000781 ... I3LGP4 38604172
    877213 8s5n:C (3.4) BS01 ZN ? GO:0003677 ... I3LCH3 38604172
    877214 8s5n:E (3.4) BS01 dna ? GO:0003677 ... I3LSI7 38604172
    877215 8s5n:I (3.4) BS01 ZN ? GO:0001193 ... P60899 38604172
    877216 8s5n:J (3.4) BS01 ZN ? GO:0003677 ... A0A8W4F9W9 38604172
    877217 8s5n:L (3.4) BS01 ZN ? GO:0001650 ... A0A4X1TRS6 38604172
    877218 8s5n:M (3.4) BS01 dna 2.3.1.48 GO:0000776 ... Q00403 38604172
    877219 8s5n:M (3.4) BS02 dna 2.3.1.48 GO:0000776 ... Q00403 38604172
    877220 8s5n:M (3.4) BS03 ZN 2.3.1.48 GO:0000776 ... Q00403 38604172
    877221 8s5n:O (3.4) BS01 dna ? GO:0000785 ... P20226 38604172
    877222 8s5n:O (3.4) BS02 dna ? GO:0000785 ... P20226 38604172
    877223 8s5n:R (3.4) BS01 dna 3.6.4.12 GO:0005515 ... P13984 38604172
    877224 8s5n:R (3.4) BS02 dna 3.6.4.12 GO:0005515 ... P13984 38604172
    877225 8s5n:U (3.4) BS01 dna ? GO:0000979 ... P52655 38604172
    877226 8s5n:W (3.4) BS01 ZN ? GO:0005515 ... P29083 38604172
    877227 8s5s:A (1.85) BS01 MSS N/A GO:0006790 ... Q5SIP4 39561325
    877228 8s5u:A (3.28) BS01 VIB N/A GO:0005515 ... Q9BZV2 39358356
    877229 8s5w:A (3.05) BS01 2TA N/A GO:0005515 ... Q9BZV2 39358356
    877230 8s5x:A (1.12) BS01 CU N/A GO:0005507 ... Q89EJ6 39002715
    877231 8s5x:A (1.12) BS02 CU N/A GO:0005507 ... Q89EJ6 39002715
    877232 8s5x:A (1.12) BS03 FRU N/A GO:0005507 ... Q89EJ6 39002715
    877233 8s5y:A (1.3) BS01 CU N/A GO:0005507 ... Q89EJ6 39002715
    877234 8s5y:A (1.3) BS02 CU N/A GO:0005507 ... Q89EJ6 39002715
    877235 8s5y:A (1.3) BS03 FRU N/A GO:0005507 ... Q89EJ6 39002715
    877236 8s5z:A (3.0) BS01 A1H5D N/A GO:0005515 ... Q9BZV2 39358356
    877237 8s60:A (1.801) BS01 A1H5B N/A GO:0003950 ... Q9H2K2 39983556
    877238 8s60:A (1.801) BS02 ZN N/A GO:0003950 ... Q9H2K2 39983556
    877239 8s60:C (1.801) BS01 A1H5B N/A GO:0003950 ... Q9H2K2 39983556
    877240 8s60:C (1.801) BS02 ZN N/A GO:0003950 ... Q9H2K2 39983556
    877241 8s61:A (3.53) BS01 VIB N/A GO:0005515 ... Q9BZV2 39358356
    877242 8s62:A (3.75) BS01 A1H5C N/A GO:0005515 ... Q9BZV2 39358356
    877243 8s63:A (1.17) BS01 CU N/A GO:0005507 ... Q89EJ6 39002715
    877244 8s63:A (1.17) BS02 CU N/A GO:0005507 ... Q89EJ6 39002715
    877245 8s63:A (1.17) BS03 FRU N/A GO:0005507 ... Q89EJ6 39002715
    877246 8s64:A (1.42) BS01 FRU N/A GO:0005507 ... Q89EJ6 39002715
    877247 8s64:A (1.42) BS02 CU N/A GO:0005507 ... Q89EJ6 39002715
    877248 8s64:A (1.42) BS03 CU N/A GO:0005507 ... Q89EJ6 39002715
    877249 8s65:A (2.56) BS01 NAP N/A N/A S8ESX0 39105673
    877250 8s65:A (2.56) BS02 FOM N/A N/A S8ESX0 39105673
    877251 8s65:A (2.56) BS03 MG N/A N/A S8ESX0 39105673
    877252 8s65:A (2.56) BS04 MG N/A N/A S8ESX0 39105673
    877253 8s65:B (2.56) BS01 NAP N/A N/A S8ESX0 39105673
    877254 8s65:B (2.56) BS02 FOM N/A N/A S8ESX0 39105673
    877255 8s65:B (2.56) BS03 MG N/A N/A S8ESX0 39105673
    877256 8s67:A (1.097) BS01 A1H5A N/A GO:0030246 ... P17931 N/A
    877257 8s68:A (1.66) BS01 CU N/A GO:0005507 ... Q89EJ6 39002715
    877258 8s68:A (1.66) BS02 CU N/A GO:0005507 ... Q89EJ6 39002715
    877259 8s68:A (1.66) BS03 FRU N/A GO:0005507 ... Q89EJ6 39002715
    877260 8s69:A (1.78) BS01 FRU N/A GO:0005507 ... Q89EJ6 39002715
    877261 8s69:A (1.78) BS02 CU N/A GO:0005507 ... Q89EJ6 39002715
    877262 8s69:A (1.78) BS03 CU N/A GO:0005507 ... Q89EJ6 39002715
    877263 8s6a:A (1.36) BS01 peptide N/A GO:0016055 ... Q92997 40516532
    877264 8s6c:A (1.74) BS01 HEM N/A GO:0004601 ... N/A 39570012
    877265 8s6c:A (1.74) BS02 CA N/A GO:0004601 ... N/A 39570012
    877266 8s6c:A (1.74) BS03 CA N/A GO:0004601 ... N/A 39570012
    877267 8s6f:A (1.93) BS01 VQR N/A GO:0004197 ... P03313 39456193
    877268 8s6g:A (1.21) BS01 FAD N/A GO:0016491 ... A0A177D2A1 40216756
    877269 8s6i:A (1.72) BS01 A1H5G N/A GO:0004672 ... Q92772 39140040
    877270 8s6j:A (2.15) BS01 657 N/A GO:0001518 ... A0L5S6 39341837
    877271 8s6k:A (1.75) BS01 peptide N/A N/A N/A N/A
    877272 8s6k:H (1.75) BS01 peptide N/A N/A N/A N/A
    877273 8s6n:A (1.743) BS01 peptide N/A GO:0003723 ... A0A0D1DWZ5 39499630
    877274 8s6n:B (1.743) BS01 peptide N/A GO:0003723 ... A0A0D1DWZ5 39499630
    877275 8s6n:D (1.743) BS01 peptide N/A GO:0003723 ... A0A0D1DWZ5 39499630
    877276 8s6n:G (1.743) BS01 peptide N/A GO:0003723 ... A0A0D1DWZ5 39499630
    877277 8s6o:A (2.4) BS01 peptide N/A GO:0003723 ... A0A0D1DWZ5 39499630
    877278 8s6o:C (2.4) BS01 peptide N/A GO:0003723 ... A0A0D1DWZ5 39499630
    877279 8s6o:D (2.4) BS01 peptide N/A GO:0003723 ... A0A0D1DWZ5 39499630
    877280 8s6o:F (2.4) BS01 peptide N/A GO:0003723 ... A0A0D1DWZ5 39499630
    877281 8s6o:I (2.4) BS01 peptide N/A GO:0003723 ... A0A0D1DWZ5 39499630
    877282 8s6o:K (2.4) BS01 peptide N/A GO:0003723 ... A0A0D1DWZ5 39499630
    877283 8s6o:M (2.4) BS01 peptide N/A GO:0003723 ... A0A0D1DWZ5 39499630
    877284 8s6o:O (2.4) BS01 peptide N/A GO:0003723 ... A0A0D1DWZ5 39499630
    877285 8s6p:A (2.9) BS01 A1IPF N/A N/A N/A 41282371
    877286 8s6r:A (1.25) BS01 RS3 N/A GO:0005737 ... K4R812 39097184
    877287 8s6r:A (1.25) BS02 RS3 N/A GO:0005737 ... K4R812 39097184
    877288 8s6r:B (1.25) BS01 RS3 N/A GO:0005737 ... K4R812 39097184
    877289 8s6r:B (1.25) BS02 RS3 N/A GO:0005737 ... K4R812 39097184
    877290 8s6s:A (1.789) BS01 CU N/A N/A G4YSM3 40216756
    877291 8s6s:B (1.789) BS01 CU N/A N/A G4YSM3 40216756
    877292 8s6t:A (1.85) BS01 SIA N/A N/A N/A N/A
    877293 8s6u:A (2.0) BS01 peptide N/A GO:0003723 ... Q4P8R9 39499630
    877294 8s6u:Q (2.0) BS01 peptide N/A GO:0003723 ... Q4P8R9 39499630
    877295 8s6v:B (1.95) BS01 peptide N/A N/A N/A N/A
    877296 8s6v:D (1.95) BS01 peptide N/A N/A N/A N/A
    877297 8s6y:AAA (2.031) BS01 A1H5I N/A N/A P28347 41193428
    877298 8s6y:BBB (2.031) BS01 A1H5I N/A N/A P28347 41193428
    877299 8s6y:CCC (2.031) BS01 A1H5I N/A N/A P28347 41193428
    877300 8s6y:DDD (2.031) BS01 A1H5I N/A N/A P28347 41193428
    877301 8s6z:B (3.05) BS01 ZN N/A N/A N/A 39760515
    877302 8s6z:C (3.05) BS01 ZN N/A GO:0042129 ... P10747 39760515
    877303 8s6z:E (3.05) BS01 ZN N/A N/A N/A 39760515
    877304 8s6z:E (3.05) BS02 ZN N/A N/A N/A 39760515
    877305 8s6z:F (3.05) BS01 ZN N/A GO:0042129 ... P10747 39760515
    877306 8s70:D (4.2) BS01 dna N/A GO:0000150 ... P08280 39898034
    877307 8s70:D (4.2) BS02 AGS N/A GO:0000150 ... P08280 39898034
    877308 8s71:A (2.05) BS01 CU N/A N/A G4YSM7 40216756
    877309 8s71:B (2.05) BS01 CU N/A N/A G4YSM7 40216756
    877310 8s73:B (2.2) BS01 peptide N/A N/A N/A N/A
    877311 8s73:D (2.2) BS01 peptide N/A N/A N/A N/A
    877312 8s75:A (1.42) BS01 A1H5L N/A GO:0003824 ... P34913 N/A
    877313 8s75:B (1.42) BS01 A1H5L N/A GO:0003824 ... P34913 N/A
    877314 8s76:A (1.48) BS01 A1H5M N/A GO:0003824 ... P34913 40532036
    877315 8s76:B (1.48) BS01 A1H5M N/A GO:0003824 ... P34913 40532036
    877316 8s77:A (1.36) BS01 A1H5J N/A GO:0003824 ... P34913 40532036
    877317 8s77:B (1.36) BS01 A1H5J N/A GO:0003824 ... P34913 40532036
    877318 8s7b:A (1.75) BS01 MN N/A N/A Q6ES21 N/A
    877319 8s7b:A (1.75) BS02 AKG N/A N/A Q6ES21 N/A
    877320 8s7f:A (1.6) BS01 MN N/A GO:0005737 ... Q8FK47 39236497
    877321 8s7f:A (1.6) BS02 MN N/A GO:0005737 ... Q8FK47 39236497
    877322 8s7f:A (1.6) BS03 A1H5P N/A GO:0005737 ... Q8FK47 39236497
    877323 8s7g:C (3.43) BS01 dna N/A GO:0000150 ... P08280 39898034
    877324 8s7g:C (3.43) BS02 AGS N/A GO:0000150 ... P08280 39898034
    877325 8s7g:C (3.43) BS03 MG N/A GO:0000150 ... P08280 39898034
    877326 8s7g:C (3.43) BS04 AGS N/A GO:0000150 ... P08280 39898034
    877327 8s7g:D (3.43) BS01 dna N/A GO:0000150 ... P08280 39898034
    877328 8s7g:D (3.43) BS02 AGS N/A GO:0000150 ... P08280 39898034
    877329 8s7g:D (3.43) BS03 AGS N/A GO:0000150 ... P08280 39898034
    877330 8s7g:E (3.43) BS01 dna N/A GO:0000150 ... P08280 39898034
    877331 8s7g:E (3.43) BS02 AGS N/A GO:0000150 ... P08280 39898034
    877332 8s7g:E (3.43) BS03 AGS N/A GO:0000150 ... P08280 39898034
    877333 8s7g:F (3.43) BS01 dna N/A GO:0000150 ... P08280 39898034
    877334 8s7g:F (3.43) BS02 AGS N/A GO:0000150 ... P08280 39898034
    877335 8s7g:F (3.43) BS03 AGS N/A GO:0000150 ... P08280 39898034
    877336 8s7g:G (3.43) BS01 dna N/A GO:0000150 ... P08280 39898034
    877337 8s7g:G (3.43) BS02 AGS N/A GO:0000150 ... P08280 39898034
    877338 8s7g:G (3.43) BS03 AGS N/A GO:0000150 ... P08280 39898034
    877339 8s7g:H (3.43) BS01 dna N/A GO:0000150 ... P08280 39898034
    877340 8s7g:H (3.43) BS02 AGS N/A GO:0000150 ... P08280 39898034
    877341 8s7g:H (3.43) BS03 AGS N/A GO:0000150 ... P08280 39898034
    877342 8s7g:I (3.43) BS01 dna N/A GO:0000150 ... P08280 39898034
    877343 8s7g:I (3.43) BS02 AGS N/A GO:0000150 ... P08280 39898034
    877344 8s7g:I (3.43) BS03 AGS N/A GO:0000150 ... P08280 39898034
    877345 8s7g:J (3.43) BS01 dna N/A GO:0000150 ... P08280 39898034
    877346 8s7g:J (3.43) BS02 AGS N/A GO:0000150 ... P08280 39898034
    877347 8s7g:J (3.43) BS03 AGS N/A GO:0000150 ... P08280 39898034
    877348 8s7g:K (3.43) BS01 dna N/A GO:0000150 ... P08280 39898034
    877349 8s7g:K (3.43) BS02 AGS N/A GO:0000150 ... P08280 39898034
    877350 8s7g:K (3.43) BS03 AGS N/A GO:0000150 ... P08280 39898034
    877351 8s7g:L (3.43) BS01 dna N/A GO:0000150 ... P08280 39898034
    877352 8s7g:L (3.43) BS02 MG N/A GO:0000150 ... P08280 39898034
    877353 8s7g:L (3.43) BS03 AGS N/A GO:0000150 ... P08280 39898034
    877354 8s7g:L (3.43) BS04 AGS N/A GO:0000150 ... P08280 39898034
    877355 8s7g:M (3.43) BS01 dna N/A GO:0000150 ... P08280 39898034
    877356 8s7g:M (3.43) BS02 MG N/A GO:0000150 ... P08280 39898034
    877357 8s7g:M (3.43) BS03 AGS N/A GO:0000150 ... P08280 39898034
    877358 8s7j:A (2.26) BS01 A1H9Q N/A GO:0005198 ... P21404 39292620
    877359 8s7k:A (3.2) BS01 dna N/A GO:0000287 ... P9WG47 N/A
    877360 8s7k:A (3.2) BS02 dna N/A GO:0000287 ... P9WG47 N/A
    877361 8s7k:B (3.2) BS01 dna N/A GO:0000287 ... P9WG45 N/A
    877362 8s7k:B (3.2) BS02 dna N/A GO:0000287 ... P9WG45 N/A
    877363 8s7k:C (3.2) BS01 dna N/A GO:0000287 ... P9WG47 N/A
    877364 8s7k:C (3.2) BS02 dna N/A GO:0000287 ... P9WG47 N/A
    877365 8s7k:D (3.2) BS01 dna N/A GO:0000287 ... P9WG45 N/A
    877366 8s7k:D (3.2) BS02 dna N/A GO:0000287 ... P9WG45 N/A
    877367 8s7m:A (1.5) BS01 RBF N/A GO:0005737 ... K4R812 N/A
    877368 8s7m:A (1.5) BS02 RBF N/A GO:0005737 ... K4R812 N/A
    877369 8s7m:B (1.5) BS01 RBF N/A GO:0005737 ... K4R812 N/A
    877370 8s7m:B (1.5) BS02 RBF N/A GO:0005737 ... K4R812 N/A
    877371 8s7m:C (1.5) BS01 RBF N/A GO:0005737 ... K4R812 N/A
    877372 8s7m:C (1.5) BS02 RBF N/A GO:0005737 ... K4R812 N/A
    877373 8s7m:D (1.5) BS01 RBF N/A GO:0005737 ... K4R812 N/A
    877374 8s7m:D (1.5) BS02 RBF N/A GO:0005737 ... K4R812 N/A
    877375 8s7n:A (1.8) BS01 FAD N/A GO:0003824 ... A0A2S7K3M2 39781101
    877376 8s7n:A (1.8) BS02 EOL N/A GO:0003824 ... A0A2S7K3M2 39781101
    877377 8s7n:B (1.8) BS01 FAD N/A GO:0003824 ... A0A2S7K3M2 39781101
    877378 8s7n:B (1.8) BS02 EOL N/A GO:0003824 ... A0A2S7K3M2 39781101
    877379 8s7o:A (2.8) BS01 dna N/A GO:0000287 ... P9WG47 N/A
    877380 8s7o:A (2.8) BS02 dna N/A GO:0000287 ... P9WG47 N/A
    877381 8s7o:A (2.8) BS03 A1H5Q N/A GO:0000287 ... P9WG47 N/A
    877382 8s7o:B (2.8) BS01 dna N/A GO:0000287 ... P9WG45 N/A
    877383 8s7o:B (2.8) BS02 dna N/A GO:0000287 ... P9WG45 N/A
    877384 8s7o:C (2.8) BS01 dna N/A GO:0000287 ... P9WG47 N/A
    877385 8s7o:C (2.8) BS02 dna N/A GO:0000287 ... P9WG47 N/A
    877386 8s7o:D (2.8) BS01 dna N/A GO:0000287 ... P9WG45 N/A
    877387 8s7o:D (2.8) BS02 dna N/A GO:0000287 ... P9WG45 N/A
    877388 8s7p:A (2.35) BS01 FAD N/A GO:0003824 ... A0A2S7K3M2 39781101
    877389 8s7p:B (2.35) BS01 FAD N/A GO:0003824 ... A0A2S7K3M2 39781101
    877390 8s7p:C (2.35) BS01 FAD N/A GO:0003824 ... A0A2S7K3M2 39781101
    877391 8s7q:A (2.4) BS01 FAD N/A GO:0003824 ... A0A2S7K3M2 39781101
    877392 8s7q:B (2.4) BS01 FAD N/A GO:0003824 ... A0A2S7K3M2 39781101
    877393 8s7r:A (1.9) BS01 FAD N/A GO:0003824 ... A0A2S7K3M2 39781101
    877394 8s7r:B (1.9) BS01 FAD N/A GO:0003824 ... A0A2S7K3M2 39781101
    877395 8s7r:C (1.9) BS01 FAD N/A GO:0003824 ... A0A2S7K3M2 39781101
    877396 8s7s:A (2.5) BS01 FAD N/A GO:0003824 ... A0A2S7K3M2 39781101
    877397 8s7s:B (2.5) BS01 FAD N/A GO:0003824 ... A0A2S7K3M2 39781101
    877398 8s7s:C (2.5) BS01 FAD N/A GO:0003824 ... A0A2S7K3M2 39781101
    877399 8s7t:A (2.1) BS01 FAD N/A GO:0003824 ... A0A2S7K3M2 39781101
    877400 8s7t:B (2.1) BS01 FAD N/A GO:0003824 ... A0A2S7K3M2 39781101

    Reference:
  • Chengxin Zhang, Xi Zhang, Lydia Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).