SEQ2FUN

BioLiP
Download all results in tab-seperated text for 942758 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    877601 8t30:Bc (2.88) BS01 rna N/A N/A Q3E7X9 N/A
    877602 8t30:Bd (2.88) BS01 rna N/A N/A P41057 N/A
    877603 8t30:Be (2.88) BS01 rna N/A GO:0002181 ... P0CX33 N/A
    877604 8t30:Bf (2.88) BS01 rna N/A N/A P05759 N/A
    877605 8t30:Bg (2.88) BS01 rna N/A GO:0001965 ... P38011 N/A
    877606 8t31:A (2.096) BS01 peptide ? GO:0000045 ... O95166 38726830
    877607 8t31:C (2.096) BS01 peptide ? GO:0000045 ... O95166 38726830
    877608 8t31:E (2.096) BS01 peptide ? GO:0000045 ... O95166 38726830
    877609 8t31:G (2.096) BS01 peptide ? GO:0000045 ... O95166 38726830
    877610 8t31:I (2.096) BS01 peptide ? GO:0000045 ... O95166 38726830
    877611 8t32:A (2.051) BS01 peptide ? GO:0000045 ... O95166 38726830
    877612 8t33:A (1.599) BS01 peptide ? GO:0000045 ... O95166 38726830
    877613 8t33:A (1.599) BS02 ZN ? GO:0000045 ... O95166 38726830
    877614 8t3a:AA (2.86) BS01 rna N/A GO:0002181 ... P0CX45 N/A
    877615 8t3a:AB (2.86) BS01 rna N/A GO:0000027 ... P14126 N/A
    877616 8t3a:AC (2.86) BS01 rna N/A N/A P10664 N/A
    877617 8t3a:AC (2.86) BS02 rna N/A N/A P10664 N/A
    877618 8t3a:AD (2.86) BS01 rna N/A N/A P26321 N/A
    877619 8t3a:AD (2.86) BS02 rna N/A N/A P26321 N/A
    877620 8t3a:AE (2.86) BS01 rna N/A GO:0000027 ... Q02326 N/A
    877621 8t3a:AF (2.86) BS01 rna N/A GO:0000463 ... P05737 N/A
    877622 8t3a:AF (2.86) BS02 rna N/A GO:0000463 ... P05737 N/A
    877623 8t3a:AG (2.86) BS01 rna N/A GO:0000470 ... P17076 N/A
    877624 8t3a:AG (2.86) BS02 rna N/A GO:0000470 ... P17076 N/A
    877625 8t3a:AH (2.86) BS01 rna N/A GO:0002181 ... P05738 N/A
    877626 8t3a:AI (2.86) BS01 rna N/A N/A P41805 N/A
    877627 8t3a:AI (2.86) BS02 rna N/A N/A P41805 N/A
    877628 8t3a:AJ (2.86) BS01 rna N/A N/A P0C0W9 N/A
    877629 8t3a:AJ (2.86) BS02 rna N/A N/A P0C0W9 N/A
    877630 8t3a:AL (2.86) BS01 rna N/A GO:0002181 ... Q12690 N/A
    877631 8t3a:AL (2.86) BS02 rna N/A GO:0002181 ... Q12690 N/A
    877632 8t3a:AM (2.86) BS01 rna N/A GO:0000027 ... P36105 N/A
    877633 8t3a:AN (2.86) BS01 rna N/A GO:0002181 ... P05748 N/A
    877634 8t3a:AN (2.86) BS02 rna N/A GO:0002181 ... P05748 N/A
    877635 8t3a:AO (2.86) BS01 rna N/A GO:0000470 ... P26784 N/A
    877636 8t3a:AP (2.86) BS01 rna N/A GO:0000448 ... P05740 N/A
    877637 8t3a:AP (2.86) BS02 rna N/A GO:0000448 ... P05740 N/A
    877638 8t3a:AQ (2.86) BS01 rna N/A GO:0002181 ... P0CX49 N/A
    877639 8t3a:AR (2.86) BS01 rna N/A GO:0002181 ... P0CX82 N/A
    877640 8t3a:AR (2.86) BS02 rna N/A GO:0002181 ... P0CX82 N/A
    877641 8t3a:AS (2.86) BS01 rna N/A GO:0005840 ... P0CX23 N/A
    877642 8t3a:AS (2.86) BS02 rna N/A GO:0005840 ... P0CX23 N/A
    877643 8t3a:AT (2.86) BS01 rna N/A GO:0002181 ... Q02753 N/A
    877644 8t3a:AT (2.86) BS02 rna N/A GO:0002181 ... Q02753 N/A
    877645 8t3a:AU (2.86) BS01 rna N/A GO:0002181 ... P05749 N/A
    877646 8t3a:AV (2.86) BS01 rna N/A GO:0002181 ... P0CX41 N/A
    877647 8t3a:AV (2.86) BS02 rna N/A GO:0002181 ... P0CX41 N/A
    877648 8t3a:AW (2.86) BS01 rna N/A N/A P04449 N/A
    877649 8t3a:AX (2.86) BS01 rna N/A GO:0000027 ... P04456 N/A
    877650 8t3a:AX (2.86) BS02 rna N/A GO:0000027 ... P04456 N/A
    877651 8t3a:AY (2.86) BS01 rna N/A GO:0002181 ... P05743 N/A
    877652 8t3a:AY (2.86) BS02 rna N/A GO:0002181 ... P05743 N/A
    877653 8t3a:AZ (2.86) BS01 rna N/A GO:0002181 ... P0C2H6 N/A
    877654 8t3a:Aa (2.86) BS01 rna N/A GO:0002181 ... P02406 N/A
    877655 8t3a:Ab (2.86) BS01 rna N/A N/A P05747 N/A
    877656 8t3a:Ac (2.86) BS01 rna N/A GO:0002181 ... P14120 N/A
    877657 8t3a:Ad (2.86) BS01 rna N/A GO:0002181 ... P0C2H8 N/A
    877658 8t3a:Ae (2.86) BS01 rna N/A N/A P38061 N/A
    877659 8t3a:Af (2.86) BS01 rna N/A GO:0000027 ... P05744 N/A
    877660 8t3a:Ag (2.86) BS01 rna N/A GO:0002181 ... P87262 N/A
    877661 8t3a:Ah (2.86) BS01 rna N/A GO:0000463 ... P0CX84 N/A
    877662 8t3a:Ah (2.86) BS02 rna N/A GO:0000463 ... P0CX84 N/A
    877663 8t3a:Ai (2.86) BS01 rna N/A GO:0002181 ... P05745 N/A
    877664 8t3a:Aj (2.86) BS01 rna N/A GO:0000448 ... P49166 N/A
    877665 8t3a:Aj (2.86) BS02 rna N/A GO:0000448 ... P49166 N/A
    877666 8t3a:Ak (2.86) BS01 rna N/A N/A P49167 N/A
    877667 8t3a:Al (2.86) BS01 rna N/A GO:0002181 ... P04650 N/A
    877668 8t3a:Al (2.86) BS02 rna N/A GO:0002181 ... P04650 N/A
    877669 8t3a:Am (2.86) BS01 rna N/A GO:0000027 ... P0CH08 N/A
    877670 8t3a:Ao (2.86) BS01 rna N/A GO:0002181 ... P0CX27 N/A
    877671 8t3a:Ao (2.86) BS02 rna N/A GO:0002181 ... P0CX27 N/A
    877672 8t3a:Ao (2.86) BS03 ZN N/A GO:0002181 ... P0CX27 N/A
    877673 8t3a:Ap (2.86) BS01 rna N/A GO:0002181 ... P0CX25 N/A
    877674 8t3a:BA (2.86) BS01 rna N/A GO:0000028 ... P32905 N/A
    877675 8t3a:BB (2.86) BS01 rna N/A N/A P33442 N/A
    877676 8t3a:BC (2.86) BS01 rna N/A N/A P25443 N/A
    877677 8t3a:BD (2.86) BS01 rna N/A N/A P05750 N/A
    877678 8t3a:BE (2.86) BS01 rna N/A GO:0002181 ... P0CX35 N/A
    877679 8t3a:BF (2.86) BS01 rna N/A GO:0005840 ... P26783 N/A
    877680 8t3a:BG (2.86) BS01 rna N/A GO:0000462 ... P0CX37 N/A
    877681 8t3a:BH (2.86) BS01 rna N/A GO:0002181 ... P26786 N/A
    877682 8t3a:BI (2.86) BS01 rna N/A GO:0000462 ... P0CX39 N/A
    877683 8t3a:BI (2.86) BS02 rna N/A GO:0000462 ... P0CX39 N/A
    877684 8t3a:BJ (2.86) BS01 rna N/A GO:0000462 ... O13516 N/A
    877685 8t3a:BK (2.86) BS01 rna N/A GO:0000054 ... Q08745 N/A
    877686 8t3a:BL (2.86) BS01 rna N/A GO:0000028 ... P0CX47 N/A
    877687 8t3a:BM (2.86) BS01 rna N/A N/A P48589 N/A
    877688 8t3a:BN (2.86) BS01 rna N/A GO:0000462 ... P05756 N/A
    877689 8t3a:BN (2.86) BS02 rna N/A GO:0000462 ... P05756 N/A
    877690 8t3a:BO (2.86) BS01 rna N/A GO:0000028 ... P06367 N/A
    877691 8t3a:BP (2.86) BS01 rna N/A N/A Q01855 N/A
    877692 8t3a:BQ (2.86) BS01 rna N/A GO:0000462 ... P0CX51 N/A
    877693 8t3a:BR (2.86) BS01 rna N/A GO:0000028 ... P02407 N/A
    877694 8t3a:BS (2.86) BS01 rna N/A GO:0000054 ... P0CX55 N/A
    877695 8t3a:BT (2.86) BS01 rna N/A GO:0000028 ... P07280 N/A
    877696 8t3a:BU (2.86) BS01 rna N/A N/A P38701 N/A
    877697 8t3a:BV (2.86) BS01 rna N/A GO:0000447 ... P0C0V8 N/A
    877698 8t3a:BW (2.86) BS01 rna N/A N/A P0C0W1 N/A
    877699 8t3a:BX (2.86) BS01 rna N/A GO:0000462 ... P0CX29 N/A
    877700 8t3a:BY (2.86) BS01 rna N/A GO:0000462 ... P0CX31 N/A
    877701 8t3a:BZ (2.86) BS01 rna N/A N/A Q3E792 N/A
    877702 8t3a:Ba (2.86) BS01 rna N/A N/A P39939 N/A
    877703 8t3a:Bb (2.86) BS01 rna N/A GO:0000028 ... P35997 N/A
    877704 8t3a:Bc (2.86) BS01 rna N/A N/A Q3E7X9 N/A
    877705 8t3a:Bd (2.86) BS01 rna N/A N/A P41057 N/A
    877706 8t3a:Be (2.86) BS01 rna N/A GO:0002181 ... P0CX33 N/A
    877707 8t3a:Be (2.86) BS02 rna N/A GO:0002181 ... P0CX33 N/A
    877708 8t3a:Bf (2.86) BS01 rna N/A N/A P05759 N/A
    877709 8t3a:Bg (2.86) BS01 rna N/A GO:0001965 ... P38011 N/A
    877710 8t3a:C5 (2.86) BS01 rna N/A N/A Q3E772 N/A
    877711 8t3a:C5 (2.86) BS02 rna N/A N/A Q3E772 N/A
    877712 8t3a:DC (2.86) BS01 rna N/A GO:0003746 ... P32324 N/A
    877713 8t3a:DC (2.86) BS02 rna N/A GO:0003746 ... P32324 N/A
    877714 8t3a:DC (2.86) BS03 GDP N/A GO:0003746 ... P32324 N/A
    877715 8t3a:DC (2.86) BS04 SO1 N/A GO:0003746 ... P32324 N/A
    877716 8t3a:E (2.86) BS01 rna N/A N/A P0CX43 N/A
    877717 8t3a:E (2.86) BS02 rna N/A N/A P0CX43 N/A
    877718 8t3b:AA (3.08) BS01 rna N/A GO:0002181 ... P0CX45 N/A
    877719 8t3b:AB (3.08) BS01 rna N/A GO:0000027 ... P14126 N/A
    877720 8t3b:AC (3.08) BS01 rna N/A N/A P10664 N/A
    877721 8t3b:AC (3.08) BS02 rna N/A N/A P10664 N/A
    877722 8t3b:AD (3.08) BS01 rna N/A N/A P26321 N/A
    877723 8t3b:AD (3.08) BS02 rna N/A N/A P26321 N/A
    877724 8t3b:AE (3.08) BS01 rna N/A GO:0000027 ... Q02326 N/A
    877725 8t3b:AF (3.08) BS01 rna N/A GO:0000463 ... P05737 N/A
    877726 8t3b:AF (3.08) BS02 rna N/A GO:0000463 ... P05737 N/A
    877727 8t3b:AG (3.08) BS01 rna N/A GO:0000470 ... P17076 N/A
    877728 8t3b:AG (3.08) BS02 rna N/A GO:0000470 ... P17076 N/A
    877729 8t3b:AH (3.08) BS01 rna N/A GO:0002181 ... P05738 N/A
    877730 8t3b:AI (3.08) BS01 rna N/A N/A P41805 N/A
    877731 8t3b:AI (3.08) BS02 rna N/A N/A P41805 N/A
    877732 8t3b:AJ (3.08) BS01 rna N/A N/A P0C0W9 N/A
    877733 8t3b:AJ (3.08) BS02 rna N/A N/A P0C0W9 N/A
    877734 8t3b:AL (3.08) BS01 rna N/A GO:0002181 ... Q12690 N/A
    877735 8t3b:AL (3.08) BS02 rna N/A GO:0002181 ... Q12690 N/A
    877736 8t3b:AM (3.08) BS01 rna N/A GO:0000027 ... P36105 N/A
    877737 8t3b:AN (3.08) BS01 rna N/A GO:0002181 ... P05748 N/A
    877738 8t3b:AN (3.08) BS02 rna N/A GO:0002181 ... P05748 N/A
    877739 8t3b:AO (3.08) BS01 rna N/A GO:0000470 ... P26784 N/A
    877740 8t3b:AP (3.08) BS01 rna N/A GO:0000448 ... P05740 N/A
    877741 8t3b:AP (3.08) BS02 rna N/A GO:0000448 ... P05740 N/A
    877742 8t3b:AQ (3.08) BS01 rna N/A GO:0002181 ... P0CX49 N/A
    877743 8t3b:AR (3.08) BS01 rna N/A GO:0002181 ... P0CX82 N/A
    877744 8t3b:AR (3.08) BS02 rna N/A GO:0002181 ... P0CX82 N/A
    877745 8t3b:AS (3.08) BS01 rna N/A GO:0005840 ... P0CX23 N/A
    877746 8t3b:AS (3.08) BS02 rna N/A GO:0005840 ... P0CX23 N/A
    877747 8t3b:AT (3.08) BS01 rna N/A GO:0002181 ... Q02753 N/A
    877748 8t3b:AT (3.08) BS02 rna N/A GO:0002181 ... Q02753 N/A
    877749 8t3b:AU (3.08) BS01 rna N/A GO:0002181 ... P05749 N/A
    877750 8t3b:AV (3.08) BS01 rna N/A GO:0002181 ... P0CX41 N/A
    877751 8t3b:AV (3.08) BS02 rna N/A GO:0002181 ... P0CX41 N/A
    877752 8t3b:AW (3.08) BS01 rna N/A N/A P04449 N/A
    877753 8t3b:AX (3.08) BS01 rna N/A GO:0000027 ... P04456 N/A
    877754 8t3b:AX (3.08) BS02 rna N/A GO:0000027 ... P04456 N/A
    877755 8t3b:AY (3.08) BS01 rna N/A GO:0002181 ... P05743 N/A
    877756 8t3b:AY (3.08) BS02 rna N/A GO:0002181 ... P05743 N/A
    877757 8t3b:AZ (3.08) BS01 rna N/A GO:0002181 ... P0C2H6 N/A
    877758 8t3b:Aa (3.08) BS01 rna N/A GO:0002181 ... P02406 N/A
    877759 8t3b:Ab (3.08) BS01 rna N/A N/A P05747 N/A
    877760 8t3b:Ac (3.08) BS01 rna N/A GO:0002181 ... P14120 N/A
    877761 8t3b:Ad (3.08) BS01 rna N/A GO:0002181 ... P0C2H8 N/A
    877762 8t3b:Ae (3.08) BS01 rna N/A N/A P38061 N/A
    877763 8t3b:Af (3.08) BS01 rna N/A GO:0000027 ... P05744 N/A
    877764 8t3b:Ag (3.08) BS01 rna N/A GO:0002181 ... P87262 N/A
    877765 8t3b:Ah (3.08) BS01 rna N/A GO:0000463 ... P0CX84 N/A
    877766 8t3b:Ah (3.08) BS02 rna N/A GO:0000463 ... P0CX84 N/A
    877767 8t3b:Ai (3.08) BS01 rna N/A GO:0002181 ... P05745 N/A
    877768 8t3b:Aj (3.08) BS01 rna N/A GO:0000448 ... P49166 N/A
    877769 8t3b:Aj (3.08) BS02 rna N/A GO:0000448 ... P49166 N/A
    877770 8t3b:Ak (3.08) BS01 rna N/A N/A P49167 N/A
    877771 8t3b:Al (3.08) BS01 rna N/A GO:0002181 ... P04650 N/A
    877772 8t3b:Al (3.08) BS02 rna N/A GO:0002181 ... P04650 N/A
    877773 8t3b:Am (3.08) BS01 rna N/A GO:0000027 ... P0CH08 N/A
    877774 8t3b:Ao (3.08) BS01 rna N/A GO:0002181 ... P0CX27 N/A
    877775 8t3b:Ao (3.08) BS02 ZN N/A GO:0002181 ... P0CX27 N/A
    877776 8t3b:Ap (3.08) BS01 rna N/A GO:0002181 ... P0CX25 N/A
    877777 8t3b:Ap (3.08) BS02 rna N/A GO:0002181 ... P0CX25 N/A
    877778 8t3b:BA (3.08) BS01 rna N/A GO:0000028 ... P32905 N/A
    877779 8t3b:BB (3.08) BS01 rna N/A N/A P33442 N/A
    877780 8t3b:BC (3.08) BS01 rna N/A N/A P25443 N/A
    877781 8t3b:BD (3.08) BS01 rna N/A N/A P05750 N/A
    877782 8t3b:BE (3.08) BS01 rna N/A GO:0002181 ... P0CX35 N/A
    877783 8t3b:BF (3.08) BS01 rna N/A GO:0005840 ... P26783 N/A
    877784 8t3b:BF (3.08) BS02 rna N/A GO:0005840 ... P26783 N/A
    877785 8t3b:BG (3.08) BS01 rna N/A GO:0000462 ... P0CX37 N/A
    877786 8t3b:BH (3.08) BS01 rna N/A GO:0002181 ... P26786 N/A
    877787 8t3b:BI (3.08) BS01 rna N/A GO:0000462 ... P0CX39 N/A
    877788 8t3b:BI (3.08) BS02 rna N/A GO:0000462 ... P0CX39 N/A
    877789 8t3b:BJ (3.08) BS01 rna N/A GO:0000462 ... O13516 N/A
    877790 8t3b:BK (3.08) BS01 rna N/A GO:0000054 ... Q08745 N/A
    877791 8t3b:BL (3.08) BS01 rna N/A GO:0000028 ... P0CX47 N/A
    877792 8t3b:BM (3.08) BS01 rna N/A N/A P48589 N/A
    877793 8t3b:BN (3.08) BS01 rna N/A GO:0000462 ... P05756 N/A
    877794 8t3b:BN (3.08) BS02 rna N/A GO:0000462 ... P05756 N/A
    877795 8t3b:BO (3.08) BS01 rna N/A GO:0000028 ... P06367 N/A
    877796 8t3b:BP (3.08) BS01 rna N/A N/A Q01855 N/A
    877797 8t3b:BQ (3.08) BS01 rna N/A GO:0000462 ... P0CX51 N/A
    877798 8t3b:BR (3.08) BS01 rna N/A GO:0000028 ... P02407 N/A
    877799 8t3b:BS (3.08) BS01 rna N/A GO:0000054 ... P0CX55 N/A
    877800 8t3b:BT (3.08) BS01 rna N/A GO:0000028 ... P07280 N/A
    Reference:
  • Chengxin Zhang, Xi Zhang, Lydia Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).