SEQ2FUN

BioLiP
Download all results in tab-seperated text for 1072681 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.
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    # PDB
    (Resolution Å)
    Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    877601 8s8f:N (3.95) BS01 rna N/A GO:0003735 ... Q6CJK0 39193907
    877602 8s8f:O (3.95) BS01 rna N/A GO:0000028 ... P27069 39193907
    877603 8s8f:P (3.95) BS01 rna N/A GO:0000028 ... Q6CKV4 39193907
    877604 8s8f:Q (3.95) BS01 rna N/A GO:0000462 ... Q875N2 39193907
    877605 8s8f:R (3.95) BS01 rna N/A GO:0000028 ... Q6CWU3 39193907
    877606 8s8f:S (3.95) BS01 rna N/A GO:0000054 ... Q6CWT9 39193907
    877607 8s8f:T (3.95) BS01 rna N/A GO:0000028 ... Q6CXM0 39193907
    877608 8s8f:U (3.95) BS01 rna N/A GO:0003735 ... Q6CIM1 39193907
    877609 8s8f:V (3.95) BS01 rna N/A GO:0000447 ... Q6CXT6 39193907
    877610 8s8f:W (3.95) BS01 rna N/A GO:0003735 ... Q6CW21 39193907
    877611 8s8f:X (3.95) BS01 rna N/A GO:0003735 ... F2Z602 39193907
    877612 8s8f:Y (3.95) BS01 rna N/A GO:0003735 ... Q6CU44 39193907
    877613 8s8f:Z (3.95) BS01 rna N/A GO:0006451 ... Q6CW78 39193907
    877614 8s8f:a (3.95) BS01 rna N/A GO:0000054 ... Q6CS01 39193907
    877615 8s8f:a (3.95) BS02 rna N/A GO:0000054 ... Q6CS01 39193907
    877616 8s8f:a (3.95) BS03 ZN N/A GO:0000054 ... Q6CS01 39193907
    877617 8s8f:b (3.95) BS01 rna N/A GO:0000028 ... Q6CNL2 39193907
    877618 8s8f:b (3.95) BS02 ZN N/A GO:0000028 ... Q6CNL2 39193907
    877619 8s8f:c (3.95) BS01 rna N/A GO:0000028 ... P33285 39193907
    877620 8s8f:c (3.95) BS02 rna N/A GO:0000028 ... P33285 39193907
    877621 8s8f:d (3.95) BS01 rna N/A GO:0002181 ... Q6CPG3 39193907
    877622 8s8f:e (3.95) BS01 rna N/A GO:0003735 ... Q6CUH5 39193907
    877623 8s8f:f (3.95) BS01 rna N/A GO:0003735 ... P69061 39193907
    877624 8s8f:g (3.95) BS01 rna N/A GO:0005092 ... Q6CNI7 39193907
    877625 8s8f:i (3.95) BS01 rna N/A GO:0001677 ... P38912 39193907
    877626 8s8f:i (3.95) BS02 MG N/A GO:0001677 ... P38912 39193907
    877627 8s8f:j (3.95) BS01 rna N/A GO:0001731 ... P20459 39193907
    877628 8s8f:k (3.95) BS01 rna N/A GO:0000049 ... P32481 39193907
    877629 8s8f:k (3.95) BS02 peptide N/A GO:0000049 ... P32481 39193907
    877630 8s8f:k (3.95) BS03 MET N/A GO:0000049 ... P32481 39193907
    877631 8s8f:m (3.95) BS01 rna N/A GO:0001731 ... P32911 39193907
    877632 8s8f:m (3.95) BS02 rna N/A GO:0001731 ... P32911 39193907
    877633 8s8g:A (4.0) BS01 rna N/A GO:0000028 ... Q6CN12 39193907
    877634 8s8g:B (4.0) BS01 rna N/A GO:0003735 ... Q6CWD0 39193907
    877635 8s8g:C (4.0) BS01 rna N/A GO:0003723 ... Q6CKL3 39193907
    877636 8s8g:C (4.0) BS02 rna N/A GO:0003723 ... Q6CKL3 39193907
    877637 8s8g:D (4.0) BS01 rna N/A GO:0003723 ... Q6CRK7 39193907
    877638 8s8g:D (4.0) BS02 rna N/A GO:0003723 ... Q6CRK7 39193907
    877639 8s8g:E (4.0) BS01 rna N/A GO:0002181 ... Q6CWJ2 39193907
    877640 8s8g:F (4.0) BS01 rna N/A GO:0003723 ... Q6CRA3 39193907
    877641 8s8g:F (4.0) BS02 rna N/A GO:0003723 ... Q6CRA3 39193907
    877642 8s8g:G (4.0) BS01 rna N/A GO:0003735 ... Q6CM04 39193907
    877643 8s8g:H (4.0) BS01 rna N/A GO:0003735 ... Q6CTD6 39193907
    877644 8s8g:I (4.0) BS01 rna N/A GO:0000462 ... Q6CMG3 39193907
    877645 8s8g:J (4.0) BS01 rna N/A GO:0003723 ... Q6CM18 39193907
    877646 8s8g:K (4.0) BS01 rna N/A GO:0000054 ... Q6CVZ5 39193907
    877647 8s8g:L (4.0) BS01 rna N/A GO:0000028 ... Q6CX80 39193907
    877648 8s8g:M (4.0) BS01 rna N/A GO:0003735 ... Q6CLU4 39193907
    877649 8s8g:N (4.0) BS01 rna N/A GO:0003735 ... Q6CJK0 39193907
    877650 8s8g:O (4.0) BS01 rna N/A GO:0000028 ... P27069 39193907
    877651 8s8g:P (4.0) BS01 rna N/A GO:0000028 ... Q6CKV4 39193907
    877652 8s8g:Q (4.0) BS01 rna N/A GO:0000462 ... Q875N2 39193907
    877653 8s8g:R (4.0) BS01 rna N/A GO:0000028 ... Q6CWU3 39193907
    877654 8s8g:S (4.0) BS01 rna N/A GO:0000054 ... Q6CWT9 39193907
    877655 8s8g:T (4.0) BS01 rna N/A GO:0000028 ... Q6CXM0 39193907
    877656 8s8g:U (4.0) BS01 rna N/A GO:0003735 ... Q6CIM1 39193907
    877657 8s8g:W (4.0) BS01 rna N/A GO:0003735 ... Q6CW21 39193907
    877658 8s8g:X (4.0) BS01 rna N/A GO:0003735 ... F2Z602 39193907
    877659 8s8g:Y (4.0) BS01 rna N/A GO:0003735 ... Q6CU44 39193907
    877660 8s8g:Z (4.0) BS01 rna N/A GO:0006451 ... Q6CW78 39193907
    877661 8s8g:a (4.0) BS01 rna N/A GO:0000054 ... Q6CS01 39193907
    877662 8s8g:a (4.0) BS02 rna N/A GO:0000054 ... Q6CS01 39193907
    877663 8s8g:a (4.0) BS03 ZN N/A GO:0000054 ... Q6CS01 39193907
    877664 8s8g:b (4.0) BS01 rna N/A GO:0000028 ... Q6CNL2 39193907
    877665 8s8g:b (4.0) BS02 ZN N/A GO:0000028 ... Q6CNL2 39193907
    877666 8s8g:c (4.0) BS01 rna N/A GO:0000028 ... P33285 39193907
    877667 8s8g:c (4.0) BS02 rna N/A GO:0000028 ... P33285 39193907
    877668 8s8g:d (4.0) BS01 rna N/A GO:0002181 ... Q6CPG3 39193907
    877669 8s8g:e (4.0) BS01 rna N/A GO:0003735 ... Q6CUH5 39193907
    877670 8s8g:f (4.0) BS01 rna N/A GO:0003735 ... P69061 39193907
    877671 8s8g:g (4.0) BS01 rna N/A GO:0005092 ... Q6CNI7 39193907
    877672 8s8g:i (4.0) BS01 rna N/A GO:0001677 ... P38912 39193907
    877673 8s8g:i (4.0) BS02 rna N/A GO:0001677 ... P38912 39193907
    877674 8s8g:j (4.0) BS01 rna N/A GO:0001731 ... P20459 39193907
    877675 8s8g:k (4.0) BS01 rna N/A GO:0000049 ... P32481 39193907
    877676 8s8g:k (4.0) BS02 MET N/A GO:0000049 ... P32481 39193907
    877677 8s8h:A (4.0) BS01 rna N/A GO:0000028 ... Q6CN12 39193907
    877678 8s8h:B (4.0) BS01 rna N/A GO:0003735 ... Q6CWD0 39193907
    877679 8s8h:C (4.0) BS01 rna N/A GO:0003723 ... Q6CKL3 39193907
    877680 8s8h:C (4.0) BS02 rna N/A GO:0003723 ... Q6CKL3 39193907
    877681 8s8h:D (4.0) BS01 rna N/A GO:0003723 ... Q6CRK7 39193907
    877682 8s8h:D (4.0) BS02 rna N/A GO:0003723 ... Q6CRK7 39193907
    877683 8s8h:E (4.0) BS01 rna N/A GO:0002181 ... Q6CWJ2 39193907
    877684 8s8h:F (4.0) BS01 rna N/A GO:0003723 ... Q6CRA3 39193907
    877685 8s8h:F (4.0) BS02 rna N/A GO:0003723 ... Q6CRA3 39193907
    877686 8s8h:G (4.0) BS01 rna N/A GO:0003735 ... Q6CM04 39193907
    877687 8s8h:H (4.0) BS01 rna N/A GO:0003735 ... Q6CTD6 39193907
    877688 8s8h:I (4.0) BS01 rna N/A GO:0000462 ... Q6CMG3 39193907
    877689 8s8h:J (4.0) BS01 rna N/A GO:0003723 ... Q6CM18 39193907
    877690 8s8h:K (4.0) BS01 rna N/A GO:0000054 ... Q6CVZ5 39193907
    877691 8s8h:L (4.0) BS01 rna N/A GO:0000028 ... Q6CX80 39193907
    877692 8s8h:M (4.0) BS01 rna N/A GO:0003735 ... Q6CLU4 39193907
    877693 8s8h:N (4.0) BS01 rna N/A GO:0003735 ... Q6CJK0 39193907
    877694 8s8h:O (4.0) BS01 rna N/A GO:0000028 ... P27069 39193907
    877695 8s8h:P (4.0) BS01 rna N/A GO:0000028 ... Q6CKV4 39193907
    877696 8s8h:Q (4.0) BS01 rna N/A GO:0000462 ... Q875N2 39193907
    877697 8s8h:R (4.0) BS01 rna N/A GO:0000028 ... Q6CWU3 39193907
    877698 8s8h:S (4.0) BS01 rna N/A GO:0000054 ... Q6CWT9 39193907
    877699 8s8h:T (4.0) BS01 rna N/A GO:0000028 ... Q6CXM0 39193907
    877700 8s8h:U (4.0) BS01 rna N/A GO:0003735 ... Q6CIM1 39193907
    877701 8s8h:W (4.0) BS01 rna N/A GO:0003735 ... Q6CW21 39193907
    877702 8s8h:X (4.0) BS01 rna N/A GO:0003735 ... F2Z602 39193907
    877703 8s8h:Y (4.0) BS01 rna N/A GO:0003735 ... Q6CU44 39193907
    877704 8s8h:Z (4.0) BS01 rna N/A GO:0006451 ... Q6CW78 39193907
    877705 8s8h:a (4.0) BS01 rna N/A GO:0000054 ... Q6CS01 39193907
    877706 8s8h:a (4.0) BS02 rna N/A GO:0000054 ... Q6CS01 39193907
    877707 8s8h:a (4.0) BS03 ZN N/A GO:0000054 ... Q6CS01 39193907
    877708 8s8h:b (4.0) BS01 rna N/A GO:0000028 ... Q6CNL2 39193907
    877709 8s8h:b (4.0) BS02 ZN N/A GO:0000028 ... Q6CNL2 39193907
    877710 8s8h:c (4.0) BS01 rna N/A GO:0000028 ... P33285 39193907
    877711 8s8h:d (4.0) BS01 rna N/A GO:0002181 ... Q6CPG3 39193907
    877712 8s8h:e (4.0) BS01 rna N/A GO:0003735 ... Q6CUH5 39193907
    877713 8s8h:f (4.0) BS01 rna N/A GO:0003735 ... P69061 39193907
    877714 8s8h:g (4.0) BS01 rna N/A GO:0005092 ... Q6CNI7 39193907
    877715 8s8h:i (4.0) BS01 rna N/A GO:0001677 ... P38912 39193907
    877716 8s8h:j (4.0) BS01 rna N/A GO:0001731 ... P20459 39193907
    877717 8s8h:j (4.0) BS02 rna N/A GO:0001731 ... P20459 39193907
    877718 8s8h:k (4.0) BS01 rna N/A GO:0000049 ... P32481 39193907
    877719 8s8h:k (4.0) BS02 MET N/A GO:0000049 ... P32481 39193907
    877720 8s8h:l (4.0) BS01 rna N/A GO:0001731 ... P09064 39193907
    877721 8s8i:A (4.3) BS01 rna N/A GO:0000028 ... Q6CN12 39193907
    877722 8s8i:B (4.3) BS01 rna N/A GO:0003735 ... Q6CWD0 39193907
    877723 8s8i:C (4.3) BS01 rna N/A GO:0003723 ... Q6CKL3 39193907
    877724 8s8i:C (4.3) BS02 rna N/A GO:0003723 ... Q6CKL3 39193907
    877725 8s8i:D (4.3) BS01 rna N/A GO:0003723 ... Q6CRK7 39193907
    877726 8s8i:D (4.3) BS02 rna N/A GO:0003723 ... Q6CRK7 39193907
    877727 8s8i:E (4.3) BS01 rna N/A GO:0002181 ... Q6CWJ2 39193907
    877728 8s8i:F (4.3) BS01 rna N/A GO:0003723 ... Q6CRA3 39193907
    877729 8s8i:F (4.3) BS02 rna N/A GO:0003723 ... Q6CRA3 39193907
    877730 8s8i:G (4.3) BS01 rna N/A GO:0003735 ... Q6CM04 39193907
    877731 8s8i:H (4.3) BS01 rna N/A GO:0003735 ... Q6CTD6 39193907
    877732 8s8i:I (4.3) BS01 rna N/A GO:0000462 ... Q6CMG3 39193907
    877733 8s8i:J (4.3) BS01 rna N/A GO:0003723 ... Q6CM18 39193907
    877734 8s8i:K (4.3) BS01 rna N/A GO:0000054 ... Q6CVZ5 39193907
    877735 8s8i:L (4.3) BS01 rna N/A GO:0000028 ... Q6CX80 39193907
    877736 8s8i:M (4.3) BS01 rna N/A GO:0003735 ... Q6CLU4 39193907
    877737 8s8i:N (4.3) BS01 rna N/A GO:0003735 ... Q6CJK0 39193907
    877738 8s8i:O (4.3) BS01 rna N/A GO:0000028 ... P27069 39193907
    877739 8s8i:P (4.3) BS01 rna N/A GO:0000028 ... Q6CKV4 39193907
    877740 8s8i:Q (4.3) BS01 rna N/A GO:0000462 ... Q875N2 39193907
    877741 8s8i:R (4.3) BS01 rna N/A GO:0000028 ... Q6CWU3 39193907
    877742 8s8i:S (4.3) BS01 rna N/A GO:0000054 ... Q6CWT9 39193907
    877743 8s8i:T (4.3) BS01 rna N/A GO:0000028 ... Q6CXM0 39193907
    877744 8s8i:U (4.3) BS01 rna N/A GO:0003735 ... Q6CIM1 39193907
    877745 8s8i:V (4.3) BS01 rna N/A GO:0000447 ... Q6CXT6 39193907
    877746 8s8i:W (4.3) BS01 rna N/A GO:0003735 ... Q6CW21 39193907
    877747 8s8i:X (4.3) BS01 rna N/A GO:0003735 ... F2Z602 39193907
    877748 8s8i:Y (4.3) BS01 rna N/A GO:0003735 ... Q6CU44 39193907
    877749 8s8i:Z (4.3) BS01 rna N/A GO:0006451 ... Q6CW78 39193907
    877750 8s8i:a (4.3) BS01 rna N/A GO:0000054 ... Q6CS01 39193907
    877751 8s8i:a (4.3) BS02 rna N/A GO:0000054 ... Q6CS01 39193907
    877752 8s8i:a (4.3) BS03 ZN N/A GO:0000054 ... Q6CS01 39193907
    877753 8s8i:b (4.3) BS01 rna N/A GO:0000028 ... Q6CNL2 39193907
    877754 8s8i:b (4.3) BS02 ZN N/A GO:0000028 ... Q6CNL2 39193907
    877755 8s8i:c (4.3) BS01 rna N/A GO:0000028 ... P33285 39193907
    877756 8s8i:c (4.3) BS02 rna N/A GO:0000028 ... P33285 39193907
    877757 8s8i:d (4.3) BS01 rna N/A GO:0002181 ... Q6CPG3 39193907
    877758 8s8i:e (4.3) BS01 rna N/A GO:0003735 ... Q6CUH5 39193907
    877759 8s8i:f (4.3) BS01 rna N/A GO:0003735 ... P69061 39193907
    877760 8s8i:f (4.3) BS02 ZN N/A GO:0003735 ... P69061 39193907
    877761 8s8i:g (4.3) BS01 rna N/A GO:0005092 ... Q6CNI7 39193907
    877762 8s8i:i (4.3) BS01 rna N/A GO:0001677 ... P38912 39193907
    877763 8s8i:i (4.3) BS02 rna N/A GO:0001677 ... P38912 39193907
    877764 8s8i:i (4.3) BS03 MG N/A GO:0001677 ... P38912 39193907
    877765 8s8i:j (4.3) BS01 rna N/A GO:0001731 ... P20459 39193907
    877766 8s8i:j (4.3) BS02 rna N/A GO:0001731 ... P20459 39193907
    877767 8s8i:k (4.3) BS01 rna N/A GO:0000049 ... P32481 39193907
    877768 8s8i:k (4.3) BS02 MET N/A GO:0000049 ... P32481 39193907
    877769 8s8i:l (4.3) BS01 rna N/A GO:0001731 ... P09064 39193907
    877770 8s8i:m (4.3) BS01 rna N/A GO:0001731 ... P32911 39193907
    877771 8s8j:A (4.7) BS01 rna N/A GO:0000028 ... Q6CN12 39193907
    877772 8s8j:B (4.7) BS01 rna N/A GO:0003735 ... Q6CWD0 39193907
    877773 8s8j:C (4.7) BS01 rna N/A GO:0003723 ... Q6CKL3 39193907
    877774 8s8j:D (4.7) BS01 rna N/A GO:0003723 ... Q6CRK7 39193907
    877775 8s8j:D (4.7) BS02 rna N/A GO:0003723 ... Q6CRK7 39193907
    877776 8s8j:E (4.7) BS01 rna N/A GO:0002181 ... Q6CWJ2 39193907
    877777 8s8j:F (4.7) BS01 rna N/A GO:0003723 ... Q6CRA3 39193907
    877778 8s8j:F (4.7) BS02 rna N/A GO:0003723 ... Q6CRA3 39193907
    877779 8s8j:G (4.7) BS01 rna N/A GO:0003735 ... Q6CM04 39193907
    877780 8s8j:H (4.7) BS01 rna N/A GO:0003735 ... Q6CTD6 39193907
    877781 8s8j:I (4.7) BS01 rna N/A GO:0000462 ... Q6CMG3 39193907
    877782 8s8j:J (4.7) BS01 rna N/A GO:0003723 ... Q6CM18 39193907
    877783 8s8j:K (4.7) BS01 rna N/A GO:0000054 ... Q6CVZ5 39193907
    877784 8s8j:L (4.7) BS01 rna N/A GO:0000028 ... Q6CX80 39193907
    877785 8s8j:M (4.7) BS01 rna N/A GO:0003735 ... Q6CLU4 39193907
    877786 8s8j:N (4.7) BS01 rna N/A GO:0003735 ... Q6CJK0 39193907
    877787 8s8j:O (4.7) BS01 rna N/A GO:0000028 ... P27069 39193907
    877788 8s8j:P (4.7) BS01 rna N/A GO:0000028 ... Q6CKV4 39193907
    877789 8s8j:Q (4.7) BS01 rna N/A GO:0000462 ... Q875N2 39193907
    877790 8s8j:R (4.7) BS01 rna N/A GO:0000028 ... Q6CWU3 39193907
    877791 8s8j:S (4.7) BS01 rna N/A GO:0000054 ... Q6CWT9 39193907
    877792 8s8j:T (4.7) BS01 rna N/A GO:0000028 ... Q6CXM0 39193907
    877793 8s8j:U (4.7) BS01 rna N/A GO:0003735 ... Q6CIM1 39193907
    877794 8s8j:W (4.7) BS01 rna N/A GO:0003735 ... Q6CW21 39193907
    877795 8s8j:X (4.7) BS01 rna N/A GO:0003735 ... F2Z602 39193907
    877796 8s8j:Y (4.7) BS01 rna N/A GO:0003735 ... Q6CU44 39193907
    877797 8s8j:Z (4.7) BS01 rna N/A GO:0006451 ... Q6CW78 39193907
    877798 8s8j:a (4.7) BS01 rna N/A GO:0000054 ... Q6CS01 39193907
    877799 8s8j:a (4.7) BS02 rna N/A GO:0000054 ... Q6CS01 39193907
    877800 8s8j:a (4.7) BS03 ZN N/A GO:0000054 ... Q6CS01 39193907

    Reference:
  • Chengxin Zhang, Xi Zhang, Lydia Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).