SEQ2FUN

BioLiP
Download all results in tab-seperated text for 942758 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.
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    # PDB
    (Resolution Å)
    Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    878001 8t3d:BN (2.95) BS01 rna N/A GO:0000462 ... P05756 N/A
    878002 8t3d:BN (2.95) BS02 rna N/A GO:0000462 ... P05756 N/A
    878003 8t3d:BO (2.95) BS01 rna N/A GO:0000028 ... P06367 N/A
    878004 8t3d:BP (2.95) BS01 rna N/A N/A Q01855 N/A
    878005 8t3d:BQ (2.95) BS01 rna N/A GO:0000462 ... P0CX51 N/A
    878006 8t3d:BR (2.95) BS01 rna N/A GO:0000028 ... P02407 N/A
    878007 8t3d:BS (2.95) BS01 rna N/A GO:0000054 ... P0CX55 N/A
    878008 8t3d:BT (2.95) BS01 rna N/A GO:0000028 ... P07280 N/A
    878009 8t3d:BU (2.95) BS01 rna N/A N/A P38701 N/A
    878010 8t3d:BV (2.95) BS01 rna N/A GO:0000447 ... P0C0V8 N/A
    878011 8t3d:BW (2.95) BS01 rna N/A N/A P0C0W1 N/A
    878012 8t3d:BX (2.95) BS01 rna N/A GO:0000462 ... P0CX29 N/A
    878013 8t3d:BY (2.95) BS01 rna N/A GO:0000462 ... P0CX31 N/A
    878014 8t3d:BZ (2.95) BS01 rna N/A N/A Q3E792 N/A
    878015 8t3d:BZ (2.95) BS02 rna N/A N/A Q3E792 N/A
    878016 8t3d:Ba (2.95) BS01 rna N/A N/A P39939 N/A
    878017 8t3d:Bb (2.95) BS01 rna N/A GO:0000028 ... P35997 N/A
    878018 8t3d:Bc (2.95) BS01 rna N/A N/A Q3E7X9 N/A
    878019 8t3d:Bd (2.95) BS01 rna N/A N/A P41057 N/A
    878020 8t3d:Be (2.95) BS01 rna N/A GO:0002181 ... P0CX33 N/A
    878021 8t3d:Bf (2.95) BS01 rna N/A N/A P05759 N/A
    878022 8t3d:Bg (2.95) BS01 rna N/A GO:0001965 ... P38011 N/A
    878023 8t3d:DC (2.95) BS01 rna N/A GO:0003746 ... P32324 N/A
    878024 8t3d:DC (2.95) BS02 rna N/A GO:0003746 ... P32324 N/A
    878025 8t3d:DC (2.95) BS03 GDP N/A GO:0003746 ... P32324 N/A
    878026 8t3d:DC (2.95) BS04 MG N/A GO:0003746 ... P32324 N/A
    878027 8t3d:DC (2.95) BS05 SO1 N/A GO:0003746 ... P32324 N/A
    878028 8t3d:E (2.95) BS01 rna N/A N/A P0CX43 N/A
    878029 8t3d:E (2.95) BS02 rna N/A N/A P0CX43 N/A
    878030 8t3e:AA (3.04) BS01 rna N/A GO:0002181 ... P0CX45 N/A
    878031 8t3e:AA (3.04) BS02 rna N/A GO:0002181 ... P0CX45 N/A
    878032 8t3e:AB (3.04) BS01 rna N/A GO:0000027 ... P14126 N/A
    878033 8t3e:AC (3.04) BS01 rna N/A N/A P10664 N/A
    878034 8t3e:AC (3.04) BS02 rna N/A N/A P10664 N/A
    878035 8t3e:AD (3.04) BS01 rna N/A N/A P26321 N/A
    878036 8t3e:AD (3.04) BS02 rna N/A N/A P26321 N/A
    878037 8t3e:AE (3.04) BS01 rna N/A GO:0000027 ... Q02326 N/A
    878038 8t3e:AF (3.04) BS01 rna N/A GO:0000463 ... P05737 N/A
    878039 8t3e:AF (3.04) BS02 rna N/A GO:0000463 ... P05737 N/A
    878040 8t3e:AG (3.04) BS01 rna N/A GO:0000470 ... P17076 N/A
    878041 8t3e:AG (3.04) BS02 rna N/A GO:0000470 ... P17076 N/A
    878042 8t3e:AH (3.04) BS01 rna N/A GO:0002181 ... P05738 N/A
    878043 8t3e:AI (3.04) BS01 rna N/A N/A P41805 N/A
    878044 8t3e:AI (3.04) BS02 rna N/A N/A P41805 N/A
    878045 8t3e:AJ (3.04) BS01 rna N/A N/A P0C0W9 N/A
    878046 8t3e:AJ (3.04) BS02 rna N/A N/A P0C0W9 N/A
    878047 8t3e:AL (3.04) BS01 rna N/A GO:0002181 ... Q12690 N/A
    878048 8t3e:AL (3.04) BS02 rna N/A GO:0002181 ... Q12690 N/A
    878049 8t3e:AM (3.04) BS01 rna N/A GO:0000027 ... P36105 N/A
    878050 8t3e:AN (3.04) BS01 rna N/A GO:0002181 ... P05748 N/A
    878051 8t3e:AN (3.04) BS02 rna N/A GO:0002181 ... P05748 N/A
    878052 8t3e:AO (3.04) BS01 rna N/A GO:0000470 ... P26784 N/A
    878053 8t3e:AP (3.04) BS01 rna N/A GO:0000448 ... P05740 N/A
    878054 8t3e:AP (3.04) BS02 rna N/A GO:0000448 ... P05740 N/A
    878055 8t3e:AQ (3.04) BS01 rna N/A GO:0002181 ... P0CX49 N/A
    878056 8t3e:AR (3.04) BS01 rna N/A GO:0002181 ... P0CX82 N/A
    878057 8t3e:AR (3.04) BS02 rna N/A GO:0002181 ... P0CX82 N/A
    878058 8t3e:AS (3.04) BS01 rna N/A GO:0005840 ... P0CX23 N/A
    878059 8t3e:AS (3.04) BS02 rna N/A GO:0005840 ... P0CX23 N/A
    878060 8t3e:AT (3.04) BS01 rna N/A GO:0002181 ... Q02753 N/A
    878061 8t3e:AT (3.04) BS02 rna N/A GO:0002181 ... Q02753 N/A
    878062 8t3e:AU (3.04) BS01 rna N/A GO:0002181 ... P05749 N/A
    878063 8t3e:AV (3.04) BS01 rna N/A GO:0002181 ... P0CX41 N/A
    878064 8t3e:AW (3.04) BS01 rna N/A N/A P04449 N/A
    878065 8t3e:AX (3.04) BS01 rna N/A GO:0000027 ... P04456 N/A
    878066 8t3e:AX (3.04) BS02 rna N/A GO:0000027 ... P04456 N/A
    878067 8t3e:AY (3.04) BS01 rna N/A GO:0002181 ... P05743 N/A
    878068 8t3e:AY (3.04) BS02 rna N/A GO:0002181 ... P05743 N/A
    878069 8t3e:AZ (3.04) BS01 rna N/A GO:0002181 ... P0C2H6 N/A
    878070 8t3e:Aa (3.04) BS01 rna N/A GO:0002181 ... P02406 N/A
    878071 8t3e:Ab (3.04) BS01 rna N/A N/A P05747 N/A
    878072 8t3e:Ac (3.04) BS01 rna N/A GO:0002181 ... P14120 N/A
    878073 8t3e:Ad (3.04) BS01 rna N/A GO:0002181 ... P0C2H8 N/A
    878074 8t3e:Ae (3.04) BS01 rna N/A N/A P38061 N/A
    878075 8t3e:Af (3.04) BS01 rna N/A GO:0000027 ... P05744 N/A
    878076 8t3e:Ag (3.04) BS01 rna N/A GO:0002181 ... P87262 N/A
    878077 8t3e:Ah (3.04) BS01 rna N/A GO:0000463 ... P0CX84 N/A
    878078 8t3e:Ah (3.04) BS02 rna N/A GO:0000463 ... P0CX84 N/A
    878079 8t3e:Ai (3.04) BS01 rna N/A GO:0002181 ... P05745 N/A
    878080 8t3e:Aj (3.04) BS01 rna N/A GO:0000448 ... P49166 N/A
    878081 8t3e:Aj (3.04) BS02 rna N/A GO:0000448 ... P49166 N/A
    878082 8t3e:Ak (3.04) BS01 rna N/A N/A P49167 N/A
    878083 8t3e:Al (3.04) BS01 rna N/A GO:0002181 ... P04650 N/A
    878084 8t3e:Al (3.04) BS02 rna N/A GO:0002181 ... P04650 N/A
    878085 8t3e:Am (3.04) BS01 rna N/A GO:0000027 ... P0CH08 N/A
    878086 8t3e:Ao (3.04) BS01 rna N/A GO:0002181 ... P0CX27 N/A
    878087 8t3e:Ao (3.04) BS02 rna N/A GO:0002181 ... P0CX27 N/A
    878088 8t3e:Ao (3.04) BS03 ZN N/A GO:0002181 ... P0CX27 N/A
    878089 8t3e:Ap (3.04) BS01 rna N/A GO:0002181 ... P0CX25 N/A
    878090 8t3e:BA (3.04) BS01 rna N/A GO:0000028 ... P32905 N/A
    878091 8t3e:BB (3.04) BS01 rna N/A N/A P33442 N/A
    878092 8t3e:BC (3.04) BS01 rna N/A N/A P25443 N/A
    878093 8t3e:BD (3.04) BS01 rna N/A N/A P05750 N/A
    878094 8t3e:BE (3.04) BS01 rna N/A GO:0002181 ... P0CX35 N/A
    878095 8t3e:BF (3.04) BS01 rna N/A GO:0005840 ... P26783 N/A
    878096 8t3e:BF (3.04) BS02 rna N/A GO:0005840 ... P26783 N/A
    878097 8t3e:BG (3.04) BS01 rna N/A GO:0000462 ... P0CX37 N/A
    878098 8t3e:BH (3.04) BS01 rna N/A GO:0002181 ... P26786 N/A
    878099 8t3e:BI (3.04) BS01 rna N/A GO:0000462 ... P0CX39 N/A
    878100 8t3e:BI (3.04) BS02 rna N/A GO:0000462 ... P0CX39 N/A
    878101 8t3e:BJ (3.04) BS01 rna N/A GO:0000462 ... O13516 N/A
    878102 8t3e:BK (3.04) BS01 rna N/A GO:0000054 ... Q08745 N/A
    878103 8t3e:BL (3.04) BS01 rna N/A GO:0000028 ... P0CX47 N/A
    878104 8t3e:BM (3.04) BS01 rna N/A N/A P48589 N/A
    878105 8t3e:BN (3.04) BS01 rna N/A GO:0000462 ... P05756 N/A
    878106 8t3e:BN (3.04) BS02 rna N/A GO:0000462 ... P05756 N/A
    878107 8t3e:BO (3.04) BS01 rna N/A GO:0000028 ... P06367 N/A
    878108 8t3e:BP (3.04) BS01 rna N/A N/A Q01855 N/A
    878109 8t3e:BQ (3.04) BS01 rna N/A GO:0000462 ... P0CX51 N/A
    878110 8t3e:BR (3.04) BS01 rna N/A GO:0000028 ... P02407 N/A
    878111 8t3e:BS (3.04) BS01 rna N/A GO:0000054 ... P0CX55 N/A
    878112 8t3e:BT (3.04) BS01 rna N/A GO:0000028 ... P07280 N/A
    878113 8t3e:BU (3.04) BS01 rna N/A N/A P38701 N/A
    878114 8t3e:BV (3.04) BS01 rna N/A GO:0000447 ... P0C0V8 N/A
    878115 8t3e:BW (3.04) BS01 rna N/A N/A P0C0W1 N/A
    878116 8t3e:BX (3.04) BS01 rna N/A GO:0000462 ... P0CX29 N/A
    878117 8t3e:BY (3.04) BS01 rna N/A GO:0000462 ... P0CX31 N/A
    878118 8t3e:BZ (3.04) BS01 rna N/A N/A Q3E792 N/A
    878119 8t3e:BZ (3.04) BS02 rna N/A N/A Q3E792 N/A
    878120 8t3e:Ba (3.04) BS01 rna N/A N/A P39939 N/A
    878121 8t3e:Bb (3.04) BS01 rna N/A GO:0000028 ... P35997 N/A
    878122 8t3e:Bc (3.04) BS01 rna N/A N/A Q3E7X9 N/A
    878123 8t3e:Bd (3.04) BS01 rna N/A N/A P41057 N/A
    878124 8t3e:Be (3.04) BS01 rna N/A GO:0002181 ... P0CX33 N/A
    878125 8t3e:Bf (3.04) BS01 rna N/A N/A P05759 N/A
    878126 8t3e:Bg (3.04) BS01 rna N/A GO:0001965 ... P38011 N/A
    878127 8t3e:DC (3.04) BS01 rna N/A GO:0003746 ... P32324 N/A
    878128 8t3e:DC (3.04) BS02 rna N/A GO:0003746 ... P32324 N/A
    878129 8t3e:DC (3.04) BS03 GDP N/A GO:0003746 ... P32324 N/A
    878130 8t3e:DC (3.04) BS04 MG N/A GO:0003746 ... P32324 N/A
    878131 8t3e:DC (3.04) BS05 SO1 N/A GO:0003746 ... P32324 N/A
    878132 8t3e:E (3.04) BS01 rna N/A N/A P0CX43 N/A
    878133 8t3e:E (3.04) BS02 rna N/A N/A P0CX43 N/A
    878134 8t3f:AA (3.09) BS01 rna N/A GO:0002181 ... P0CX45 N/A
    878135 8t3f:AA (3.09) BS02 rna N/A GO:0002181 ... P0CX45 N/A
    878136 8t3f:AB (3.09) BS01 rna N/A GO:0000027 ... P14126 N/A
    878137 8t3f:AC (3.09) BS01 rna N/A N/A P10664 N/A
    878138 8t3f:AC (3.09) BS02 rna N/A N/A P10664 N/A
    878139 8t3f:AD (3.09) BS01 rna N/A N/A P26321 N/A
    878140 8t3f:AD (3.09) BS02 rna N/A N/A P26321 N/A
    878141 8t3f:AE (3.09) BS01 rna N/A GO:0000027 ... Q02326 N/A
    878142 8t3f:AF (3.09) BS01 rna N/A GO:0000463 ... P05737 N/A
    878143 8t3f:AF (3.09) BS02 rna N/A GO:0000463 ... P05737 N/A
    878144 8t3f:AG (3.09) BS01 rna N/A GO:0000470 ... P17076 N/A
    878145 8t3f:AG (3.09) BS02 rna N/A GO:0000470 ... P17076 N/A
    878146 8t3f:AH (3.09) BS01 rna N/A GO:0002181 ... P05738 N/A
    878147 8t3f:AI (3.09) BS01 rna N/A N/A P41805 N/A
    878148 8t3f:AI (3.09) BS02 rna N/A N/A P41805 N/A
    878149 8t3f:AJ (3.09) BS01 rna N/A N/A P0C0W9 N/A
    878150 8t3f:AJ (3.09) BS02 rna N/A N/A P0C0W9 N/A
    878151 8t3f:AL (3.09) BS01 rna N/A GO:0002181 ... Q12690 N/A
    878152 8t3f:AL (3.09) BS02 rna N/A GO:0002181 ... Q12690 N/A
    878153 8t3f:AM (3.09) BS01 rna N/A GO:0000027 ... P36105 N/A
    878154 8t3f:AN (3.09) BS01 rna N/A GO:0002181 ... P05748 N/A
    878155 8t3f:AN (3.09) BS02 rna N/A GO:0002181 ... P05748 N/A
    878156 8t3f:AO (3.09) BS01 rna N/A GO:0000470 ... P26784 N/A
    878157 8t3f:AP (3.09) BS01 rna N/A GO:0000448 ... P05740 N/A
    878158 8t3f:AP (3.09) BS02 rna N/A GO:0000448 ... P05740 N/A
    878159 8t3f:AQ (3.09) BS01 rna N/A GO:0002181 ... P0CX49 N/A
    878160 8t3f:AR (3.09) BS01 rna N/A GO:0002181 ... P0CX82 N/A
    878161 8t3f:AR (3.09) BS02 rna N/A GO:0002181 ... P0CX82 N/A
    878162 8t3f:AS (3.09) BS01 rna N/A GO:0005840 ... P0CX23 N/A
    878163 8t3f:AS (3.09) BS02 rna N/A GO:0005840 ... P0CX23 N/A
    878164 8t3f:AT (3.09) BS01 rna N/A GO:0002181 ... Q02753 N/A
    878165 8t3f:AT (3.09) BS02 rna N/A GO:0002181 ... Q02753 N/A
    878166 8t3f:AU (3.09) BS01 rna N/A GO:0002181 ... P05749 N/A
    878167 8t3f:AV (3.09) BS01 rna N/A GO:0002181 ... P0CX41 N/A
    878168 8t3f:AV (3.09) BS02 rna N/A GO:0002181 ... P0CX41 N/A
    878169 8t3f:AW (3.09) BS01 rna N/A N/A P04449 N/A
    878170 8t3f:AX (3.09) BS01 rna N/A GO:0000027 ... P04456 N/A
    878171 8t3f:AX (3.09) BS02 rna N/A GO:0000027 ... P04456 N/A
    878172 8t3f:AY (3.09) BS01 rna N/A GO:0002181 ... P05743 N/A
    878173 8t3f:AY (3.09) BS02 rna N/A GO:0002181 ... P05743 N/A
    878174 8t3f:AZ (3.09) BS01 rna N/A GO:0002181 ... P0C2H6 N/A
    878175 8t3f:Aa (3.09) BS01 rna N/A GO:0002181 ... P02406 N/A
    878176 8t3f:Ab (3.09) BS01 rna N/A N/A P05747 N/A
    878177 8t3f:Ac (3.09) BS01 rna N/A GO:0002181 ... P14120 N/A
    878178 8t3f:Ad (3.09) BS01 rna N/A GO:0002181 ... P0C2H8 N/A
    878179 8t3f:Ae (3.09) BS01 rna N/A N/A P38061 N/A
    878180 8t3f:Af (3.09) BS01 rna N/A GO:0000027 ... P05744 N/A
    878181 8t3f:Ag (3.09) BS01 rna N/A GO:0002181 ... P87262 N/A
    878182 8t3f:Ah (3.09) BS01 rna N/A GO:0000463 ... P0CX84 N/A
    878183 8t3f:Ah (3.09) BS02 rna N/A GO:0000463 ... P0CX84 N/A
    878184 8t3f:Ai (3.09) BS01 rna N/A GO:0002181 ... P05745 N/A
    878185 8t3f:Aj (3.09) BS01 rna N/A GO:0000448 ... P49166 N/A
    878186 8t3f:Aj (3.09) BS02 rna N/A GO:0000448 ... P49166 N/A
    878187 8t3f:Ak (3.09) BS01 rna N/A N/A P49167 N/A
    878188 8t3f:Al (3.09) BS01 rna N/A GO:0002181 ... P04650 N/A
    878189 8t3f:Al (3.09) BS02 rna N/A GO:0002181 ... P04650 N/A
    878190 8t3f:Am (3.09) BS01 rna N/A GO:0000027 ... P0CH08 N/A
    878191 8t3f:Ao (3.09) BS01 rna N/A GO:0002181 ... P0CX27 N/A
    878192 8t3f:Ao (3.09) BS02 ZN N/A GO:0002181 ... P0CX27 N/A
    878193 8t3f:Ap (3.09) BS01 rna N/A GO:0002181 ... P0CX25 N/A
    878194 8t3f:Ap (3.09) BS02 rna N/A GO:0002181 ... P0CX25 N/A
    878195 8t3f:BA (3.09) BS01 rna N/A GO:0000028 ... P32905 N/A
    878196 8t3f:BB (3.09) BS01 rna N/A N/A P33442 N/A
    878197 8t3f:BB (3.09) BS02 rna N/A N/A P33442 N/A
    878198 8t3f:BC (3.09) BS01 rna N/A N/A P25443 N/A
    878199 8t3f:BD (3.09) BS01 rna N/A N/A P05750 N/A
    878200 8t3f:BE (3.09) BS01 rna N/A GO:0002181 ... P0CX35 N/A

    Reference:
  • Chengxin Zhang, Xi Zhang, Lydia Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).