SEQ2FUN

BioLiP
Download all results in tab-seperated text for 1072681 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
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  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
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    # PDB
    (Resolution Å)
    Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    878201 8sbj:A (3.1) BS01 ZUO 2.7.11.1
    2.7.1.137
    2.7.1.153
    GO:0001944 ... P42336 37399505
    878202 8sbk:A (1.8) BS01 peptide ? N/A A0A5H2UYS3 38039376
    878203 8sbl:A (3.0) BS01 peptide ? N/A A0A5H2UYS3 38039376
    878204 8sbl:D (3.0) BS01 peptide ? N/A A0A5H2UYS3 38039376
    878205 8sbl:G (3.0) BS01 peptide ? N/A A0A5H2UYS3 38039376
    878206 8sbl:J (3.0) BS01 peptide ? N/A A0A5H2UYS3 38039376
    878207 8sbm:A (1.47) BS01 ZN 2.7.13.3 N/A P9WGK3 37905955
    878208 8sbm:A (1.47) BS02 ZN 2.7.13.3 N/A P9WGK3 37905955
    878209 8sbm:B (1.47) BS01 ZN 2.7.13.3 N/A P9WGK3 37905955
    878210 8sbm:B (1.47) BS02 ZN 2.7.13.3 N/A P9WGK3 37905955
    878211 8sbq:A (1.5) BS01 ZUV 3.-.-.- GO:0016020 ... Q2FDS6 N/A
    878212 8sbq:A (1.5) BS02 ZUV 3.-.-.- GO:0016020 ... Q2FDS6 N/A
    878213 8sbq:B (1.5) BS01 ZUV 3.-.-.- GO:0016020 ... Q2FDS6 N/A
    878214 8sbq:B (1.5) BS02 ZUV 3.-.-.- GO:0016020 ... Q2FDS6 N/A
    878215 8sbr:A (2.59) BS01 CTP 6.3.4.2 GO:0000287 ... P0A7E5 37106216
    878216 8sbr:A (2.59) BS02 CTP 6.3.4.2 GO:0000287 ... P0A7E5 37106216
    878217 8sbr:B (2.59) BS01 CTP 6.3.4.2 GO:0000287 ... P0A7E5 37106216
    878218 8sbr:B (2.59) BS02 CTP 6.3.4.2 GO:0000287 ... P0A7E5 37106216
    878219 8sbt:A (1.5) BS01 MG N/A GO:0005524 ... P07900 39473058
    878220 8sbt:A (1.5) BS02 ZUY N/A GO:0005524 ... P07900 39473058
    878221 8sbu:A (2.2) BS01 GLC N/A GO:0000287 ... P0AEX9
    Q59028
    N/A
    878222 8sbu:A (2.2) BS02 GLC N/A GO:0000287 ... P0AEX9
    Q59028
    N/A
    878223 8sbu:B (2.2) BS01 GLC N/A GO:0000287 ... P0AEX9
    Q59028
    N/A
    878224 8sbu:B (2.2) BS02 GLC N/A GO:0000287 ... P0AEX9
    Q59028
    N/A
    878225 8sbv:B (1.55) BS01 ADP 1.3.1.28 GO:0008667 ... A0A0H3FXS4 N/A
    878226 8sby:A (2.3) BS01 NAD 1.3.1.28 GO:0008667 ... A0A0H3FXS4 N/A
    878227 8sby:B (2.3) BS01 NAD 1.3.1.28 GO:0008667 ... A0A0H3FXS4 N/A
    878228 8sbz:A (1.9) BS01 NAD 1.3.1.28 GO:0008667 ... A0A0H3FXS4 N/A
    878229 8sbz:B (1.9) BS01 NAD 1.3.1.28 GO:0008667 ... A0A0H3FXS4 N/A
    878230 8sc0:C (1.81) BS01 NAD 1.3.1.28 GO:0008667 ... A0A0H3FXS4 N/A
    878231 8sc0:D (1.81) BS01 NAD 1.3.1.28 GO:0008667 ... A0A0H3FXS4 N/A
    878232 8sc2:A (3.36) BS01 C9F ? GO:0005277 ... O15245 37821493
    878233 8sc3:A (3.24) BS01 ZVJ ? GO:0005277 ... O15245 37821493
    878234 8sc6:A (3.13) BS01 VIB ? GO:0005277 ... O15245 37821493
    878235 8sc7:A (1.984) BS01 D0D 2.7.10.1 GO:0004672 ... P00533 38992135
    878236 8sc8:A (2.687) BS01 D0D 2.7.11.1
    2.7.1.137
    2.7.1.153
    2.7.1.154
    GO:0016301 ... P48736 38992135
    878237 8sc9:B (1.855) BS01 D0D ? GO:0003677 ... P37231 38992135
    878238 8scb:A (2.5) BS01 rna ? GO:0002181 ... G1TT27 38172604
    878239 8scb:A (2.5) BS02 MG ? GO:0002181 ... G1TT27 38172604
    878240 8scb:A (2.5) BS03 MG ? GO:0002181 ... G1TT27 38172604
    878241 8scb:AA (2.5) BS01 rna ? GO:0000028 ... G1TLT8 38172604
    878242 8scb:B (2.5) BS01 rna ? GO:0003723 ... G1TL06 38172604
    878243 8scb:B (2.5) BS02 MG ? GO:0003723 ... G1TL06 38172604
    878244 8scb:BB (2.5) BS01 rna ? GO:0003735 ... G1SS70 38172604
    878245 8scb:C (2.5) BS01 rna ? GO:0003735 ... G1SVW5 38172604
    878246 8scb:C (2.5) BS02 rna ? GO:0003735 ... G1SVW5 38172604
    878247 8scb:CC (2.5) BS01 rna N/A GO:0003723 ... N/A 38172604
    878248 8scb:D (2.5) BS01 rna ? GO:0000027 ... P19949 38172604
    878249 8scb:D (2.5) BS02 rna ? GO:0000027 ... P19949 38172604
    878250 8scb:DD (2.5) BS01 rna 4.2.99.18 GO:0003723 ... G1TNM3 38172604
    878251 8scb:E (2.5) BS01 rna ? GO:0000027 ... G1SKF7 38172604
    878252 8scb:EE (2.5) BS01 rna ? GO:0003723 ... G1TK17 38172604
    878253 8scb:EE (2.5) BS02 MG ? GO:0003723 ... G1TK17 38172604
    878254 8scb:F (2.5) BS01 rna ? GO:0000463 ... G1TUB1 38172604
    878255 8scb:F (2.5) BS02 rna ? GO:0000463 ... G1TUB1 38172604
    878256 8scb:FF (2.5) BS01 rna ? GO:0003723 ... G1TFM5 38172604
    878257 8scb:FF (2.5) BS02 rna ? GO:0003723 ... G1TFM5 38172604
    878258 8scb:G (2.5) BS01 rna ? GO:0003723 ... G1STW0 38172604
    878259 8scb:G (2.5) BS02 rna ? GO:0003723 ... G1STW0 38172604
    878260 8scb:GG (2.5) BS01 rna ? GO:0003735 ... G1TM55 38172604
    878261 8scb:H (2.5) BS01 rna ? GO:0002181 ... G1SWI6 38172604
    878262 8scb:HH (2.5) BS01 rna ? GO:0003735 ... G1SVB0 38172604
    878263 8scb:I (2.5) BS01 rna ? GO:0003735 ... B7NZQ2 38172604
    878264 8scb:I (2.5) BS02 rna ? GO:0003735 ... B7NZQ2 38172604
    878265 8scb:I (2.5) BS03 MG ? GO:0003735 ... B7NZQ2 38172604
    878266 8scb:II (2.5) BS01 rna ? GO:0003735 ... G1TJW1 38172604
    878267 8scb:II (2.5) BS02 rna ? GO:0003735 ... G1TJW1 38172604
    878268 8scb:J (2.5) BS01 rna ? GO:0003735 ... G1TUB8 38172604
    878269 8scb:J (2.5) BS02 rna ? GO:0003735 ... G1TUB8 38172604
    878270 8scb:J (2.5) BS03 rna ? GO:0003735 ... G1TUB8 38172604
    878271 8scb:JJ (2.5) BS01 rna ? GO:0003723 ... B7NZS8 38172604
    878272 8scb:KK (2.5) BS01 rna ? GO:0003723 ... G1TPV3 38172604
    878273 8scb:L (2.5) BS01 rna N/A GO:0003735 ... N/A 38172604
    878274 8scb:L (2.5) BS02 rna N/A GO:0003735 ... N/A 38172604
    878275 8scb:LL (2.5) BS01 rna ? GO:0003735 ... G1TRM4 38172604
    878276 8scb:LL (2.5) BS02 MG ? GO:0003735 ... G1TRM4 38172604
    878277 8scb:M (2.5) BS01 rna ? GO:0003723 ... G1SZ12 38172604
    878278 8scb:MM (2.5) BS01 rna ? GO:0003735 ... G1SFR8 38172604
    878279 8scb:N (2.5) BS01 rna ? GO:0002181 ... G1T0C1 38172604
    878280 8scb:N (2.5) BS02 rna ? GO:0002181 ... G1T0C1 38172604
    878281 8scb:NN (2.5) BS01 rna ? GO:0003735 ... G1SP51 38172604
    878282 8scb:O (2.5) BS01 rna N/A GO:0003735 ... N/A 38172604
    878283 8scb:OO (2.5) BS01 rna ? GO:0003735 ... G1T1F0 38172604
    878284 8scb:OO (2.5) BS02 MG ? GO:0003735 ... G1T1F0 38172604
    878285 8scb:P (2.5) BS01 peptide ? GO:0002181 ... G1SCJ6 38172604
    878286 8scb:P (2.5) BS02 rna ? GO:0002181 ... G1SCJ6 38172604
    878287 8scb:P (2.5) BS03 rna ? GO:0002181 ... G1SCJ6 38172604
    878288 8scb:PP (2.5) BS01 rna ? GO:0000028 ... G1U0Q2 38172604
    878289 8scb:Q (2.5) BS01 rna ? GO:0003723 ... G1TFE0 38172604
    878290 8scb:QQ (2.5) BS01 rna ? GO:0000462 ... G1SGX4 38172604
    878291 8scb:R (2.5) BS01 rna ? GO:0003723 ... G1TJR3 38172604
    878292 8scb:R (2.5) BS02 rna ? GO:0003723 ... G1TJR3 38172604
    878293 8scb:RR (2.5) BS01 rna ? GO:0003735 ... G1TU13 38172604
    878294 8scb:S (2.5) BS01 rna N/A GO:0003735 ... N/A 38172604
    878295 8scb:S (2.5) BS02 rna N/A GO:0003735 ... N/A 38172604
    878296 8scb:SS (2.5) BS01 rna ? GO:0003676 ... G1TPG3 38172604
    878297 8scb:T (2.5) BS01 rna ? GO:0003735 ... G1SHQ2 38172604
    878298 8scb:T (2.5) BS02 rna ? GO:0003735 ... G1SHQ2 38172604
    878299 8scb:TT (2.5) BS01 rna ? GO:0000028 ... G1TN62 38172604
    878300 8scb:U (2.5) BS01 rna ? GO:0002181 ... G1TSG1 38172604
    878301 8scb:UU (2.5) BS01 rna ? GO:0003723 ... G1SIZ2 38172604
    878302 8scb:V (2.5) BS01 rna ? GO:0000122 ... G1T6D1 38172604
    878303 8scb:V (2.5) BS02 MG ? GO:0000122 ... G1T6D1 38172604
    878304 8scb:W (2.5) BS01 rna ? GO:0002181 ... G1SE28 38172604
    878305 8scb:WW (2.5) BS01 rna ? GO:0003735 ... G1TG89 38172604
    878306 8scb:X (2.5) BS01 rna ? GO:0003735 ... G1SE76 38172604
    878307 8scb:X (2.5) BS02 rna ? GO:0003735 ... G1SE76 38172604
    878308 8scb:XX (2.5) BS01 rna ? GO:0003735 ... G1SZ47 38172604
    878309 8scb:Y (2.5) BS01 rna ? GO:0003723 ... G1SQH0 38172604
    878310 8scb:Y (2.5) BS02 rna ? GO:0003723 ... G1SQH0 38172604
    878311 8scb:YY (2.5) BS01 rna ? GO:0003735 ... G1T3D8 38172604
    878312 8scb:Z (2.5) BS01 rna ? GO:0002181 ... G1TXF6 38172604
    878313 8scb:ZZ (2.5) BS01 rna ? GO:0003735 ... G1TDB3 38172604
    878314 8scb:a (2.5) BS01 rna ? GO:0003735 ... G1SNY0 38172604
    878315 8scb:aa (2.5) BS01 rna ? GO:0003729 ... G1TFE8 38172604
    878316 8scb:aa (2.5) BS02 ZN ? GO:0003729 ... G1TFE8 38172604
    878317 8scb:b (2.5) BS01 rna ? GO:0002181 ... G1SGR6 38172604
    878318 8scb:bb (2.5) BS01 rna ? GO:0003735 ... G1TZ76 38172604
    878319 8scb:c (2.5) BS01 rna ? GO:0003723 ... G1TDL2 38172604
    878320 8scb:cc (2.5) BS01 rna ? GO:0000028 ... G1TIB4 38172604
    878321 8scb:d (2.5) BS01 rna ? GO:0002181 ... G1SHG0 38172604
    878322 8scb:dd (2.5) BS01 rna ? GO:0002181 ... G1U7M4 38172604
    878323 8scb:dd (2.5) BS02 ZN ? GO:0002181 ... G1U7M4 38172604
    878324 8scb:e (2.5) BS01 rna ? GO:0003735 ... G1TUN8 38172604
    878325 8scb:e (2.5) BS02 MG ? GO:0003735 ... G1TUN8 38172604
    878326 8scb:ee (2.5) BS01 rna ? GO:0003735 ... G1T8A2 38172604
    878327 8scb:f (2.5) BS01 rna ? GO:0003735 ... G1SF08 38172604
    878328 8scb:f (2.5) BS02 MG ? GO:0003735 ... G1SF08 38172604
    878329 8scb:ff (2.5) BS01 rna ? GO:0003735 ... G1SK22 38172604
    878330 8scb:ff (2.5) BS02 ZN ? GO:0003735 ... G1SK22 38172604
    878331 8scb:g (2.5) BS01 rna ? GO:0003735 ... G1TXG5 38172604
    878332 8scb:g (2.5) BS02 ZN ? GO:0003735 ... G1TXG5 38172604
    878333 8scb:g (2.5) BS03 MG ? GO:0003735 ... G1TXG5 38172604
    878334 8scb:gg (2.5) BS01 rna ? GO:0001891 ... G1SJB4 38172604
    878335 8scb:h (2.5) BS01 rna ? GO:0000463 ... G1SIT5 38172604
    878336 8scb:h (2.5) BS02 rna ? GO:0000463 ... G1SIT5 38172604
    878337 8scb:i (2.5) BS01 rna ? GO:0003735 ... G1TTQ5 38172604
    878338 8scb:ii (2.5) BS01 rna ? GO:0002184 ... P62495 38172604
    878339 8scb:ii (2.5) BS02 rna ? GO:0002184 ... P62495 38172604
    878340 8scb:ii (2.5) BS03 rna ? GO:0002184 ... P62495 38172604
    878341 8scb:ii (2.5) BS04 rna ? GO:0002184 ... P62495 38172604
    878342 8scb:ii (2.5) BS05 ZVM ? GO:0002184 ... P62495 38172604
    878343 8scb:j (2.5) BS01 rna ? GO:0002181 ... U3KPD5 38172604
    878344 8scb:j (2.5) BS02 rna ? GO:0002181 ... U3KPD5 38172604
    878345 8scb:j (2.5) BS03 ZN ? GO:0002181 ... U3KPD5 38172604
    878346 8scb:jj (2.5) BS01 rna ? GO:0005524 ... G1SG72 38172604
    878347 8scb:jj (2.5) BS02 rna ? GO:0005524 ... G1SG72 38172604
    878348 8scb:jj (2.5) BS03 SF4 ? GO:0005524 ... G1SG72 38172604
    878349 8scb:jj (2.5) BS04 SF4 ? GO:0005524 ... G1SG72 38172604
    878350 8scb:k (2.5) BS01 rna ? GO:0003735 ... G1U001 38172604
    878351 8scb:l (2.5) BS01 rna ? GO:0003735 ... G1TTN1 38172604
    878352 8scb:l (2.5) BS02 rna ? GO:0003735 ... G1TTN1 38172604
    878353 8scb:m (2.5) BS01 rna ? GO:0003735 ... A0A2K5PSA0 38172604
    878354 8scb:m (2.5) BS02 ZN ? GO:0003735 ... A0A2K5PSA0 38172604
    878355 8scb:o (2.5) BS01 rna ? GO:0003735 ... G1T040 38172604
    878356 8scb:o (2.5) BS02 rna ? GO:0003735 ... G1T040 38172604
    878357 8scb:o (2.5) BS03 ZN ? GO:0003735 ... G1T040 38172604
    878358 8scb:p (2.5) BS01 rna ? GO:0003735 ... G1SY53 38172604
    878359 8scb:p (2.5) BS02 ZN ? GO:0003735 ... G1SY53 38172604
    878360 8scb:r (2.5) BS01 rna ? GO:0003735 ... G1U7L1 38172604
    878361 8scb:s (2.5) BS01 rna ? GO:0000027 ... G1SPK4 38172604
    878362 8scb:t (2.5) BS01 rna ? GO:0003735 ... G1SMR7 38172604
    878363 8scd:A (2.06) BS01 XHP 2.5.1.15 GO:0004156 ... C0HMD9 37419898
    878364 8scd:A (2.06) BS02 PAB 2.5.1.15 GO:0004156 ... C0HMD9 37419898
    878365 8scd:A (2.06) BS03 POP 2.5.1.15 GO:0004156 ... C0HMD9 37419898
    878366 8sce:A (1.89) BS01 ZVD N/A GO:0000287 ... Q9NWZ3 N/A
    878367 8sce:B (1.89) BS01 ZVD N/A GO:0000287 ... Q9NWZ3 N/A
    878368 8sce:D (1.89) BS01 ZVD N/A GO:0000287 ... Q9NWZ3 N/A
    878369 8sce:E (1.89) BS01 ZVD N/A GO:0000287 ... Q9NWZ3 N/A
    878370 8scg:A (2.0) BS01 dna 2.7.7.7 GO:0003676 ... D9N168 37883544
    878371 8scg:A (2.0) BS02 dna 2.7.7.7 GO:0003676 ... D9N168 37883544
    878372 8scg:A (2.0) BS03 DGT 2.7.7.7 GO:0003676 ... D9N168 37883544
    878373 8scg:A (2.0) BS04 CA 2.7.7.7 GO:0003676 ... D9N168 37883544
    878374 8scg:D (2.0) BS01 dna 2.7.7.7 GO:0003676 ... D9N168 37883544
    878375 8scg:D (2.0) BS02 dna 2.7.7.7 GO:0003676 ... D9N168 37883544
    878376 8scg:D (2.0) BS03 DGT 2.7.7.7 GO:0003676 ... D9N168 37883544
    878377 8scg:D (2.0) BS04 CA 2.7.7.7 GO:0003676 ... D9N168 37883544
    878378 8sci:A (2.67) BS01 dna 2.7.7.7 GO:0003676 ... D9N168 37883544
    878379 8sci:A (2.67) BS02 dna 2.7.7.7 GO:0003676 ... D9N168 37883544
    878380 8sci:A (2.67) BS03 DGT 2.7.7.7 GO:0003676 ... D9N168 37883544
    878381 8sci:A (2.67) BS04 CA 2.7.7.7 GO:0003676 ... D9N168 37883544
    878382 8sci:D (2.67) BS01 dna 2.7.7.7 GO:0003676 ... D9N168 37883544
    878383 8sci:D (2.67) BS02 dna 2.7.7.7 GO:0003676 ... D9N168 37883544
    878384 8sci:D (2.67) BS03 DGT 2.7.7.7 GO:0003676 ... D9N168 37883544
    878385 8sci:D (2.67) BS04 CA 2.7.7.7 GO:0003676 ... D9N168 37883544
    878386 8scj:A (2.68) BS01 dna 2.7.7.7 GO:0003676 ... D9N168 37883544
    878387 8scj:A (2.68) BS02 dna 2.7.7.7 GO:0003676 ... D9N168 37883544
    878388 8scj:A (2.68) BS03 DGT 2.7.7.7 GO:0003676 ... D9N168 37883544
    878389 8scj:A (2.68) BS04 CA 2.7.7.7 GO:0003676 ... D9N168 37883544
    878390 8scj:D (2.68) BS01 dna 2.7.7.7 GO:0003676 ... D9N168 37883544
    878391 8scj:D (2.68) BS02 dna 2.7.7.7 GO:0003676 ... D9N168 37883544
    878392 8scj:D (2.68) BS03 DGT 2.7.7.7 GO:0003676 ... D9N168 37883544
    878393 8scj:D (2.68) BS04 CA 2.7.7.7 GO:0003676 ... D9N168 37883544
    878394 8sck:A (2.3) BS01 dna 2.7.7.7 GO:0003676 ... D9N168 37883544
    878395 8sck:A (2.3) BS02 dna 2.7.7.7 GO:0003676 ... D9N168 37883544
    878396 8sck:A (2.3) BS03 DGT 2.7.7.7 GO:0003676 ... D9N168 37883544
    878397 8sck:A (2.3) BS04 CA 2.7.7.7 GO:0003676 ... D9N168 37883544
    878398 8sck:D (2.3) BS01 dna 2.7.7.7 GO:0003676 ... D9N168 37883544
    878399 8sck:D (2.3) BS02 dna 2.7.7.7 GO:0003676 ... D9N168 37883544
    878400 8sck:D (2.3) BS03 DGT 2.7.7.7 GO:0003676 ... D9N168 37883544

    Reference:
  • Chengxin Zhang, Xi Zhang, Lydia Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).