SEQ2FUN

BioLiP
Download all results in tab-seperated text for 1072681 receptor-ligand interactions, whose format is explained at readme.txt.
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    # PDB
    (Resolution Å)
    Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    880201 8sj1:A (2.81) BS05 3AT 2.7.7.86 N/A Q8C6L5 38740774
    880202 8sj1:A (2.81) BS06 ZN 2.7.7.86 N/A Q8C6L5 38740774
    880203 8sj1:A (2.81) BS07 MG 2.7.7.86 N/A Q8C6L5 38740774
    880204 8sj1:C (2.81) BS01 dna 2.7.7.86 N/A Q8C6L5 38740774
    880205 8sj1:C (2.81) BS02 dna 2.7.7.86 N/A Q8C6L5 38740774
    880206 8sj1:C (2.81) BS03 dna 2.7.7.86 N/A Q8C6L5 38740774
    880207 8sj1:C (2.81) BS04 3AT 2.7.7.86 N/A Q8C6L5 38740774
    880208 8sj1:C (2.81) BS05 ZN 2.7.7.86 N/A Q8C6L5 38740774
    880209 8sj1:C (2.81) BS06 MG 2.7.7.86 N/A Q8C6L5 38740774
    880210 8sj2:A (2.23) BS01 dna 2.7.7.86 N/A Q8C6L5 38740774
    880211 8sj2:A (2.23) BS02 dna 2.7.7.86 N/A Q8C6L5 38740774
    880212 8sj2:A (2.23) BS03 dna 2.7.7.86 N/A Q8C6L5 38740774
    880213 8sj2:A (2.23) BS04 ATP 2.7.7.86 N/A Q8C6L5 38740774
    880214 8sj2:A (2.23) BS05 DGT 2.7.7.86 N/A Q8C6L5 38740774
    880215 8sj2:A (2.23) BS06 MG 2.7.7.86 N/A Q8C6L5 38740774
    880216 8sj2:A (2.23) BS07 ZN 2.7.7.86 N/A Q8C6L5 38740774
    880217 8sj2:C (2.23) BS01 dna 2.7.7.86 N/A Q8C6L5 38740774
    880218 8sj2:C (2.23) BS02 dna 2.7.7.86 N/A Q8C6L5 38740774
    880219 8sj2:C (2.23) BS03 dna 2.7.7.86 N/A Q8C6L5 38740774
    880220 8sj2:C (2.23) BS04 ATP 2.7.7.86 N/A Q8C6L5 38740774
    880221 8sj2:C (2.23) BS05 DGT 2.7.7.86 N/A Q8C6L5 38740774
    880222 8sj2:C (2.23) BS06 MG 2.7.7.86 N/A Q8C6L5 38740774
    880223 8sj2:C (2.23) BS07 ZN 2.7.7.86 N/A Q8C6L5 38740774
    880224 8sj7:A (2.09) BS01 rna ? GO:0003723 ... Q09312 37953271
    880225 8sj8:A (2.5) BS01 ZN 2.7.7.86 N/A Q8N884 38740774
    880226 8sj8:A (2.5) BS02 OKR 2.7.7.86 N/A Q8N884 38740774
    880227 8sjb:A (1.74) BS01 CA N/A GO:0002523 ... P05109 N/A
    880228 8sjb:A (1.74) BS02 CA N/A GO:0002523 ... P05109 N/A
    880229 8sjb:A (1.74) BS03 ZN N/A GO:0002523 ... P05109 N/A
    880230 8sjb:B (1.74) BS01 CA N/A GO:0002523 ... P05109 N/A
    880231 8sjb:B (1.74) BS02 CA N/A GO:0002523 ... P05109 N/A
    880232 8sjb:C (1.74) BS01 ZN N/A GO:0005509 ... P06702 N/A
    880233 8sjb:C (1.74) BS02 CA N/A GO:0005509 ... P06702 N/A
    880234 8sjb:C (1.74) BS03 CA N/A GO:0005509 ... P06702 N/A
    880235 8sjb:D (1.74) BS01 CA N/A GO:0005509 ... P06702 N/A
    880236 8sjb:D (1.74) BS02 CA N/A GO:0005509 ... P06702 N/A
    880237 8sjc:A (1.87) BS01 CA N/A GO:0002523 ... P05109 40944454
    880238 8sjc:A (1.87) BS02 CA N/A GO:0002523 ... P05109 40944454
    880239 8sjc:A (1.87) BS03 ZN N/A GO:0002523 ... P05109 40944454
    880240 8sjc:B (1.87) BS01 MG N/A GO:0002523 ... P05109 40944454
    880241 8sjc:B (1.87) BS02 CA N/A GO:0002523 ... P05109 40944454
    880242 8sjc:B (1.87) BS03 ZN N/A GO:0002523 ... P05109 40944454
    880243 8sjc:C (1.87) BS01 MG N/A GO:0002523 ... P06702 40944454
    880244 8sjc:C (1.87) BS02 CA N/A GO:0002523 ... P06702 40944454
    880245 8sjc:C (1.87) BS03 ZN N/A GO:0002523 ... P06702 40944454
    880246 8sjc:D (1.87) BS01 CA N/A GO:0002523 ... P06702 40944454
    880247 8sjc:D (1.87) BS02 CA N/A GO:0002523 ... P06702 40944454
    880248 8sjc:D (1.87) BS03 ZN N/A GO:0002523 ... P06702 40944454
    880249 8sjd:A (5.1) BS01 dna ? GO:0003677 ... Q25438 37491363
    880250 8sjd:A (5.1) BS02 dna ? GO:0003677 ... Q25438 37491363
    880251 8sjd:A (5.1) BS03 dna ? GO:0003677 ... Q25438 37491363
    880252 8sjd:A (5.1) BS04 dna ? GO:0003677 ... Q25438 37491363
    880253 8sjd:B (5.1) BS01 dna ? GO:0003677 ... Q25438 37491363
    880254 8sjd:B (5.1) BS02 dna ? GO:0003677 ... Q25438 37491363
    880255 8sjd:B (5.1) BS03 dna ? GO:0003677 ... Q25438 37491363
    880256 8sjd:B (5.1) BS04 dna ? GO:0003677 ... Q25438 37491363
    880257 8sjd:B (5.1) BS05 dna ? GO:0003677 ... Q25438 37491363
    880258 8sjd:C (5.1) BS01 dna ? GO:0003677 ... Q25438 37491363
    880259 8sjd:C (5.1) BS02 dna ? GO:0003677 ... Q25438 37491363
    880260 8sjd:C (5.1) BS03 dna ? GO:0003677 ... Q25438 37491363
    880261 8sjd:D (5.1) BS01 dna ? GO:0003677 ... Q25438 37491363
    880262 8sjd:D (5.1) BS02 dna ? GO:0003677 ... Q25438 37491363
    880263 8sjd:D (5.1) BS03 dna ? GO:0003677 ... Q25438 37491363
    880264 8sjd:D (5.1) BS04 dna ? GO:0003677 ... Q25438 37491363
    880265 8sjh:A (1.6) BS01 CA N/A GO:0005506 ... N/A 37352018
    880266 8sjh:A (1.6) BS02 CA N/A GO:0005506 ... N/A 37352018
    880267 8sji:A (1.5) BS01 CA N/A GO:0005506 ... N/A 37352018
    880268 8sji:C (1.5) BS01 CA N/A GO:0005506 ... N/A 37352018
    880269 8sjk:A (2.22) BS01 CFF N/A N/A N/A 38958508
    880270 8sjx:A (2.5) BS01 HWP ? GO:0005212 ... Q6J8I9 39222068
    880271 8sjx:A (2.5) BS02 HWP ? GO:0005212 ... Q6J8I9 39222068
    880272 8sjx:A (2.5) BS03 HWP ? GO:0005212 ... Q6J8I9 39222068
    880273 8sjx:A (2.5) BS04 HWP ? GO:0005212 ... Q6J8I9 39222068
    880274 8sjx:A (2.5) BS05 HWP ? GO:0005212 ... Q6J8I9 39222068
    880275 8sjx:A (2.5) BS06 CLR ? GO:0005212 ... Q6J8I9 39222068
    880276 8sjy:A (2.35) BS01 HWP ? GO:0005212 ... Q6J8I9 39222068
    880277 8sjy:A (2.35) BS02 HWP ? GO:0005212 ... Q6J8I9 39222068
    880278 8sjy:A (2.35) BS03 HWP ? GO:0005212 ... Q6J8I9 39222068
    880279 8sjy:A (2.35) BS04 CLR ? GO:0005212 ... Q6J8I9 39222068
    880280 8sjy:A (2.35) BS05 CLR ? GO:0005212 ... Q6J8I9 39222068
    880281 8sjy:A (2.35) BS06 CLR ? GO:0005212 ... Q6J8I9 39222068
    880282 8sk0:A (1.51) BS01 NAD 4.2.1.46 GO:0008460 ... A0A1C5ADV9 37286037
    880283 8sk0:A (1.51) BS02 TYD 4.2.1.46 GO:0008460 ... A0A1C5ADV9 37286037
    880284 8sk0:B (1.51) BS01 NAD 4.2.1.46 GO:0008460 ... A0A1C5ADV9 37286037
    880285 8sk1:A (2.0) BS01 H73 N/A GO:0003848 ... A0A6L7HDR0 N/A
    880286 8sk1:A (2.0) BS02 H73 N/A GO:0003848 ... A0A6L7HDR0 N/A
    880287 8sk1:B (2.0) BS01 H73 N/A GO:0003848 ... A0A6L7HDR0 N/A
    880288 8sk1:B (2.0) BS02 H73 N/A GO:0003848 ... A0A6L7HDR0 N/A
    880289 8sk2:A (1.3) BS01 ZN 3.5.2.6 GO:0008800 ... C7C422 37549809
    880290 8sk2:A (1.3) BS02 ZN 3.5.2.6 GO:0008800 ... C7C422 37549809
    880291 8sk4:A (2.0) BS01 I3R 2.1.1.56
    2.1.1.57
    2.7.7.48
    2.7.7.50
    3.1.13.-
    3.4.19.12
    3.4.22.-
    3.4.22.69
    3.6.4.12
    3.6.4.13
    4.6.1.-
    GO:0008233 ... P0DTD1 37069799
    880292 8skb:A (2.58) BS01 NAD N/A GO:0047918 ... A0AAN0NPA4 38224521
    880293 8skb:B (2.58) BS01 NAD N/A GO:0047918 ... A0AAN0NPA4 38224521
    880294 8skb:C (2.58) BS01 NAD N/A GO:0047918 ... A0AAN0NPA4 38224521
    880295 8skb:D (2.58) BS01 NAD N/A GO:0047918 ... A0AAN0NPA4 38224521
    880296 8skf:A (1.8) BS01 NAD N/A GO:0008802 ... N/A N/A
    880297 8skf:A (1.8) BS02 CA N/A GO:0008802 ... N/A N/A
    880298 8skf:B (1.8) BS01 NAD N/A GO:0008802 ... N/A N/A
    880299 8skf:B (1.8) BS02 CA N/A GO:0008802 ... N/A N/A
    880300 8skh:A (1.882) BS01 A1W 2.1.1.56
    2.1.1.57
    2.7.7.48
    2.7.7.50
    3.1.13.-
    3.4.19.12
    3.4.22.-
    3.4.22.69
    3.6.4.12
    3.6.4.13
    4.6.1.-
    GO:0008233 ... P0DTD1 37069799
    880301 8ski:A (2.163) BS01 dna 2.7.7.7 GO:0003684 ... Q9Y253 N/A
    880302 8ski:A (2.163) BS02 dna 2.7.7.7 GO:0003684 ... Q9Y253 N/A
    880303 8ski:A (2.163) BS03 B7P 2.7.7.7 GO:0003684 ... Q9Y253 N/A
    880304 8ski:A (2.163) BS04 CA 2.7.7.7 GO:0003684 ... Q9Y253 N/A
    880305 8skj:A (2.01) BS01 peptide N/A N/A N/A 37517699
    880306 8skj:B (2.01) BS01 peptide N/A N/A N/A 37517699
    880307 8skj:D (2.01) BS01 peptide N/A N/A N/A 37517699
    880308 8skj:G (2.01) BS01 peptide N/A N/A N/A 37517699
    880309 8skl:A (1.55) BS01 V2O 3.1.3.48 GO:0004725 ... P18031 37500611
    880310 8skn:A (2.41) BS01 6I9 3.6.5.5 GO:0003924 ... O00429 37583827
    880311 8skn:B (2.41) BS01 6I9 3.6.5.5 GO:0003924 ... O00429 37583827
    880312 8sko:A (1.3) BS01 ZN 3.5.2.6 GO:0008270 ... C7C422 37549809
    880313 8sko:A (1.3) BS02 ZN 3.5.2.6 GO:0008270 ... C7C422 37549809
    880314 8sko:A (1.3) BS03 X8Z 3.5.2.6 GO:0008270 ... C7C422 37549809
    880315 8sko:B (1.3) BS01 ZN 3.5.2.6 GO:0008270 ... C7C422 37549809
    880316 8sko:B (1.3) BS02 ZN 3.5.2.6 GO:0008270 ... C7C422 37549809
    880317 8sko:B (1.3) BS03 X8Z 3.5.2.6 GO:0008270 ... C7C422 37549809
    880318 8skp:A (1.3) BS01 ZN 3.5.2.6 GO:0008270 ... C7C422 37549809
    880319 8skp:A (1.3) BS02 ZN 3.5.2.6 GO:0008270 ... C7C422 37549809
    880320 8skp:A (1.3) BS03 WAF 3.5.2.6 GO:0008270 ... C7C422 37549809
    880321 8skr:A (2.99) BS01 PLP 2.6.1.1
    2.6.1.7
    GO:0003723 ... P00505 37839702
    880322 8skr:C (2.99) BS01 PLP 2.6.1.1
    2.6.1.7
    GO:0003723 ... P00505 37839702
    880323 8sks:A (2.91) BS01 MN 1.15.1.1 GO:0000303 ... P04179 37839702
    880324 8sks:B (2.91) BS01 MN 1.15.1.1 GO:0000303 ... P04179 37839702
    880325 8sks:C (2.91) BS01 MN 1.15.1.1 GO:0000303 ... P04179 37839702
    880326 8sks:D (2.91) BS01 MN 1.15.1.1 GO:0000303 ... P04179 37839702
    880327 8skt:A (2.69) BS01 dna 2.7.7.86 N/A Q8C6L5 38740774
    880328 8skt:A (2.69) BS02 dna 2.7.7.86 N/A Q8C6L5 38740774
    880329 8skt:A (2.69) BS03 dna 2.7.7.86 N/A Q8C6L5 38740774
    880330 8skt:A (2.69) BS04 dna 2.7.7.86 N/A Q8C6L5 38740774
    880331 8skt:A (2.69) BS05 ATP 2.7.7.86 N/A Q8C6L5 38740774
    880332 8skt:A (2.69) BS06 ZN 2.7.7.86 N/A Q8C6L5 38740774
    880333 8skt:A (2.69) BS07 MN 2.7.7.86 N/A Q8C6L5 38740774
    880334 8skt:A (2.69) BS08 MN 2.7.7.86 N/A Q8C6L5 38740774
    880335 8skt:C (2.69) BS01 dna 2.7.7.86 N/A Q8C6L5 38740774
    880336 8skt:C (2.69) BS02 dna 2.7.7.86 N/A Q8C6L5 38740774
    880337 8skt:C (2.69) BS03 dna 2.7.7.86 N/A Q8C6L5 38740774
    880338 8skt:C (2.69) BS04 ATP 2.7.7.86 N/A Q8C6L5 38740774
    880339 8skt:C (2.69) BS05 ZN 2.7.7.86 N/A Q8C6L5 38740774
    880340 8skt:C (2.69) BS06 MN 2.7.7.86 N/A Q8C6L5 38740774
    880341 8skt:C (2.69) BS07 MN 2.7.7.86 N/A Q8C6L5 38740774
    880342 8skv:A (3.1) BS01 peptide ? N/A P01876 37872175
    880343 8skv:A (3.1) BS02 peptide ? N/A P01876 37872175
    880344 8sky:A (2.4) BS01 OXL ? GO:0003824 ... O06724 38047707
    880345 8sky:A (2.4) BS02 MN ? GO:0003824 ... O06724 38047707
    880346 8sky:B (2.4) BS01 OXL ? GO:0003824 ... O06724 38047707
    880347 8sky:B (2.4) BS02 MN ? GO:0003824 ... O06724 38047707
    880348 8skz:A (3.5) BS01 dna N/A GO:0005524 ... Q9NRZ9
    Q9XFH4
    N/A
    880349 8skz:A (3.5) BS02 dna N/A GO:0005524 ... Q9NRZ9
    Q9XFH4
    N/A
    880350 8skz:A (3.5) BS03 ADP N/A GO:0005524 ... Q9NRZ9
    Q9XFH4
    N/A
    880351 8skz:A (3.5) BS04 BEF N/A GO:0005524 ... Q9NRZ9
    Q9XFH4
    N/A
    880352 8skz:B (3.5) BS01 dna N/A GO:0000786 ... P84233 N/A
    880353 8skz:B (3.5) BS02 dna N/A GO:0000786 ... P84233 N/A
    880354 8skz:C (3.5) BS01 dna N/A GO:0000786 ... P06897 N/A
    880355 8skz:C (3.5) BS02 dna N/A GO:0000786 ... P06897 N/A
    880356 8skz:D (3.5) BS01 dna N/A GO:0000786 ... P02281 N/A
    880357 8skz:E (3.5) BS01 dna N/A GO:0000786 ... P84233 N/A
    880358 8skz:E (3.5) BS02 dna N/A GO:0000786 ... P84233 N/A
    880359 8skz:F (3.5) BS01 dna N/A GO:0000786 ... A0A8J1LTD2 N/A
    880360 8skz:G (3.5) BS01 dna N/A GO:0000786 ... P06897 N/A
    880361 8skz:H (3.5) BS01 dna N/A GO:0000786 ... P02281 N/A
    880362 8skz:H (3.5) BS02 dna N/A GO:0000786 ... P02281 N/A
    880363 8skz:I (3.5) BS01 dna N/A GO:0000786 ... A0A8J1LTD2 N/A
    880364 8skz:I (3.5) BS02 dna N/A GO:0000786 ... A0A8J1LTD2 N/A
    880365 8sl1:A (3.13) BS01 ZN 3.4.24.- GO:0008237 ... Q9BXP8 37898658
    880366 8sl1:A (3.13) BS02 CA 3.4.24.- GO:0008237 ... Q9BXP8 37898658
    880367 8sl1:A (3.13) BS03 CA 3.4.24.- GO:0008237 ... Q9BXP8 37898658
    880368 8sl7:A (2.07) BS01 BY3 4.1.99.1 GO:0006520 ... N/A 37633277
    880369 8sl7:B (2.07) BS01 BY3 4.1.99.1 GO:0006520 ... N/A 37633277
    880370 8sl7:C (2.07) BS01 BY3 4.1.99.1 GO:0006520 ... N/A 37633277
    880371 8sl7:D (2.07) BS01 BY3 4.1.99.1 GO:0006520 ... N/A 37633277
    880372 8sl9:A (1.4) BS01 H73 2.5.1.15
    2.7.6.3
    GO:0003848 ... Q5NGA7 N/A
    880373 8sld:A (2.85) BS01 MG 6.1.1.14 GO:0000166 ... G7CIG9 40587479
    880374 8slf:A (2.9) BS01 AMP 6.1.1.14 GO:0000166 ... G7CIG9 40587479
    880375 8slf:B (2.9) BS01 AMP 6.1.1.14 GO:0000166 ... G7CIG9 40587479
    880376 8slf:B (2.9) BS02 ZN 6.1.1.14 GO:0000166 ... G7CIG9 40587479
    880377 8slf:B (2.9) BS03 MG 6.1.1.14 GO:0000166 ... G7CIG9 40587479
    880378 8slg:A (1.95) BS01 G5A 6.1.1.14 GO:0000166 ... G7CIG9 40587479
    880379 8slg:A (1.95) BS02 ZN 6.1.1.14 GO:0000166 ... G7CIG9 40587479
    880380 8slg:A (1.95) BS03 MG 6.1.1.14 GO:0000166 ... G7CIG9 40587479
    880381 8slg:B (1.95) BS01 G5A 6.1.1.14 GO:0000166 ... G7CIG9 40587479
    880382 8slg:B (1.95) BS02 ZN 6.1.1.14 GO:0000166 ... G7CIG9 40587479
    880383 8slg:B (1.95) BS03 MG 6.1.1.14 GO:0000166 ... G7CIG9 40587479
    880384 8slh:A (3.05) BS01 AMP 6.1.1.14 GO:0000166 ... G7CIG9 N/A
    880385 8slh:A (3.05) BS02 MG 6.1.1.14 GO:0000166 ... G7CIG9 N/A
    880386 8sli:A (4.9) BS01 CA N/A N/A A0A455XI77 38923985
    880387 8sli:A (4.9) BS02 CA N/A N/A A0A455XI77 38923985
    880388 8sli:B (4.9) BS01 CA N/A N/A A0A455XI77 38923985
    880389 8sli:B (4.9) BS02 CA N/A N/A A0A455XI77 38923985
    880390 8sli:C (4.9) BS01 CA N/A N/A A0A455XI77 38923985
    880391 8sli:C (4.9) BS02 CA N/A N/A A0A455XI77 38923985
    880392 8sli:D (4.9) BS01 CA N/A N/A A0A455XI77 38923985
    880393 8sli:D (4.9) BS02 CA N/A N/A A0A455XI77 38923985
    880394 8slm:A (2.81) BS01 MN ? N/A Q1J1D6 38424107
    880395 8sln:A (2.2) BS01 dna ? N/A Q1J1D6 38424107
    880396 8sln:A (2.2) BS02 MN ? N/A Q1J1D6 38424107
    880397 8slo:A (1.55) BS01 ZN 3.4.11.- GO:0006508 ... O96935 38976500
    880398 8slo:A (1.55) BS02 BYW 3.4.11.- GO:0006508 ... O96935 38976500
    880399 8slp:A (3.8) BS01 CA N/A N/A A0A455XI77 38923985
    880400 8slp:A (3.8) BS02 CA N/A N/A A0A455XI77 38923985

    Reference:
  • Chengxin Zhang, Xi Zhang, Lydia Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).