SEQ2FUN

BioLiP
Download all results in tab-seperated text for 1072681 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.
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    # PDB
    (Resolution Å)
    Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    880601 8smx:K (3.2) BS02 ZN 2.3.2.27 N/A Q8IYW5 38242129
    880602 8smy:A (3.2) BS01 dna ? GO:0000786 ... P68431 38242129
    880603 8smy:A (3.2) BS02 dna ? GO:0000786 ... P68431 38242129
    880604 8smy:B (3.2) BS01 dna ? GO:0000781 ... P62805 38242129
    880605 8smy:C (3.2) BS01 dna ? GO:0000786 ... P04908 38242129
    880606 8smy:C (3.2) BS02 dna ? GO:0000786 ... P04908 38242129
    880607 8smy:D (3.2) BS01 dna ? GO:0000786 ... P06899 38242129
    880608 8smy:D (3.2) BS02 dna ? GO:0000786 ... P06899 38242129
    880609 8smy:E (3.2) BS01 dna ? GO:0000786 ... P68431 38242129
    880610 8smy:E (3.2) BS02 dna ? GO:0000786 ... P68431 38242129
    880611 8smy:F (3.2) BS01 dna ? GO:0000781 ... P62805 38242129
    880612 8smy:F (3.2) BS02 dna ? GO:0000781 ... P62805 38242129
    880613 8smy:G (3.2) BS01 dna ? GO:0000786 ... P04908 38242129
    880614 8smy:G (3.2) BS02 dna ? GO:0000786 ... P04908 38242129
    880615 8smy:H (3.2) BS01 dna ? GO:0000786 ... P06899 38242129
    880616 8smy:H (3.2) BS02 dna ? GO:0000786 ... P06899 38242129
    880617 8smy:K (3.2) BS01 ZN 2.3.2.27 N/A Q8IYW5 38242129
    880618 8smy:K (3.2) BS02 ZN 2.3.2.27 N/A Q8IYW5 38242129
    880619 8smz:A (3.2) BS01 dna ? GO:0000786 ... P68431 38242129
    880620 8smz:A (3.2) BS02 dna ? GO:0000786 ... P68431 38242129
    880621 8smz:B (3.2) BS01 dna ? GO:0000781 ... P62805 38242129
    880622 8smz:B (3.2) BS02 dna ? GO:0000781 ... P62805 38242129
    880623 8smz:C (3.2) BS01 dna ? GO:0000786 ... P04908 38242129
    880624 8smz:C (3.2) BS02 dna ? GO:0000786 ... P04908 38242129
    880625 8smz:D (3.2) BS01 dna ? GO:0000786 ... P06899 38242129
    880626 8smz:D (3.2) BS02 dna ? GO:0000786 ... P06899 38242129
    880627 8smz:E (3.2) BS01 dna ? GO:0000786 ... P68431 38242129
    880628 8smz:E (3.2) BS02 dna ? GO:0000786 ... P68431 38242129
    880629 8smz:F (3.2) BS01 dna ? GO:0000781 ... P62805 38242129
    880630 8smz:F (3.2) BS02 dna ? GO:0000781 ... P62805 38242129
    880631 8smz:G (3.2) BS01 dna ? GO:0000786 ... P04908 38242129
    880632 8smz:G (3.2) BS02 dna ? GO:0000786 ... P04908 38242129
    880633 8smz:H (3.2) BS01 dna ? GO:0000786 ... P06899 38242129
    880634 8smz:K (3.2) BS01 ZN 2.3.2.27 N/A Q8IYW5 38242129
    880635 8smz:K (3.2) BS02 ZN 2.3.2.27 N/A Q8IYW5 38242129
    880636 8sn0:A (3.2) BS01 dna ? GO:0000786 ... P68431 38242129
    880637 8sn0:A (3.2) BS02 dna ? GO:0000786 ... P68431 38242129
    880638 8sn0:B (3.2) BS01 dna ? GO:0000781 ... P62805 38242129
    880639 8sn0:B (3.2) BS02 dna ? GO:0000781 ... P62805 38242129
    880640 8sn0:C (3.2) BS01 dna ? GO:0000786 ... P04908 38242129
    880641 8sn0:C (3.2) BS02 dna ? GO:0000786 ... P04908 38242129
    880642 8sn0:D (3.2) BS01 dna ? GO:0000786 ... P06899 38242129
    880643 8sn0:D (3.2) BS02 dna ? GO:0000786 ... P06899 38242129
    880644 8sn0:E (3.2) BS01 dna ? GO:0000786 ... P68431 38242129
    880645 8sn0:E (3.2) BS02 dna ? GO:0000786 ... P68431 38242129
    880646 8sn0:F (3.2) BS01 dna ? GO:0000781 ... P62805 38242129
    880647 8sn0:F (3.2) BS02 dna ? GO:0000781 ... P62805 38242129
    880648 8sn0:G (3.2) BS01 dna ? GO:0000786 ... P04908 38242129
    880649 8sn0:G (3.2) BS02 dna ? GO:0000786 ... P04908 38242129
    880650 8sn0:H (3.2) BS01 dna ? GO:0000786 ... P06899 38242129
    880651 8sn0:H (3.2) BS02 dna ? GO:0000786 ... P06899 38242129
    880652 8sn0:K (3.2) BS01 ZN 2.3.2.27 N/A Q8IYW5 38242129
    880653 8sn0:K (3.2) BS02 ZN 2.3.2.27 N/A Q8IYW5 38242129
    880654 8sn1:A (3.3) BS01 dna ? GO:0000786 ... P68431 38242129
    880655 8sn1:A (3.3) BS02 dna ? GO:0000786 ... P68431 38242129
    880656 8sn1:B (3.3) BS01 dna ? GO:0000781 ... P62805 38242129
    880657 8sn1:B (3.3) BS02 dna ? GO:0000781 ... P62805 38242129
    880658 8sn1:C (3.3) BS01 dna ? GO:0000786 ... P04908 38242129
    880659 8sn1:C (3.3) BS02 dna ? GO:0000786 ... P04908 38242129
    880660 8sn1:D (3.3) BS01 dna ? GO:0000786 ... P06899 38242129
    880661 8sn1:D (3.3) BS02 dna ? GO:0000786 ... P06899 38242129
    880662 8sn1:E (3.3) BS01 dna ? GO:0000786 ... P68431 38242129
    880663 8sn1:E (3.3) BS02 dna ? GO:0000786 ... P68431 38242129
    880664 8sn1:F (3.3) BS01 dna ? GO:0000781 ... P62805 38242129
    880665 8sn1:F (3.3) BS02 dna ? GO:0000781 ... P62805 38242129
    880666 8sn1:G (3.3) BS01 dna ? GO:0000786 ... P04908 38242129
    880667 8sn1:G (3.3) BS02 dna ? GO:0000786 ... P04908 38242129
    880668 8sn1:H (3.3) BS01 dna ? GO:0000786 ... P06899 38242129
    880669 8sn1:H (3.3) BS02 dna ? GO:0000786 ... P06899 38242129
    880670 8sn1:K (3.3) BS01 ZN 2.3.2.27 N/A Q8IYW5 38242129
    880671 8sn1:K (3.3) BS02 ZN 2.3.2.27 N/A Q8IYW5 38242129
    880672 8sn2:A (3.6) BS01 dna ? GO:0000786 ... P68431 38242129
    880673 8sn2:A (3.6) BS02 dna ? GO:0000786 ... P68431 38242129
    880674 8sn2:B (3.6) BS01 dna ? GO:0000781 ... P62805 38242129
    880675 8sn2:B (3.6) BS02 dna ? GO:0000781 ... P62805 38242129
    880676 8sn2:C (3.6) BS01 dna ? GO:0000786 ... P04908 38242129
    880677 8sn2:C (3.6) BS02 dna ? GO:0000786 ... P04908 38242129
    880678 8sn2:D (3.6) BS01 dna ? GO:0000786 ... P06899 38242129
    880679 8sn2:D (3.6) BS02 dna ? GO:0000786 ... P06899 38242129
    880680 8sn2:E (3.6) BS01 dna ? GO:0000786 ... P68431 38242129
    880681 8sn2:E (3.6) BS02 dna ? GO:0000786 ... P68431 38242129
    880682 8sn2:F (3.6) BS01 dna ? GO:0000781 ... P62805 38242129
    880683 8sn2:G (3.6) BS01 dna ? GO:0000786 ... P04908 38242129
    880684 8sn2:G (3.6) BS02 dna ? GO:0000786 ... P04908 38242129
    880685 8sn2:H (3.6) BS01 dna ? GO:0000786 ... P06899 38242129
    880686 8sn2:H (3.6) BS02 dna ? GO:0000786 ... P06899 38242129
    880687 8sn2:K (3.6) BS01 ZN 2.3.2.27 N/A Q8IYW5 38242129
    880688 8sn2:K (3.6) BS02 ZN 2.3.2.27 N/A Q8IYW5 38242129
    880689 8sn3:A (3.8) BS01 dna ? GO:0000786 ... P68431 38242129
    880690 8sn3:A (3.8) BS02 dna ? GO:0000786 ... P68431 38242129
    880691 8sn3:B (3.8) BS01 dna ? GO:0000781 ... P62805 38242129
    880692 8sn3:B (3.8) BS02 dna ? GO:0000781 ... P62805 38242129
    880693 8sn3:C (3.8) BS01 dna ? GO:0000786 ... P04908 38242129
    880694 8sn3:C (3.8) BS02 dna ? GO:0000786 ... P04908 38242129
    880695 8sn3:D (3.8) BS01 dna ? GO:0000786 ... P06899 38242129
    880696 8sn3:D (3.8) BS02 dna ? GO:0000786 ... P06899 38242129
    880697 8sn3:E (3.8) BS01 dna ? GO:0000786 ... P68431 38242129
    880698 8sn3:E (3.8) BS02 dna ? GO:0000786 ... P68431 38242129
    880699 8sn3:F (3.8) BS01 dna ? GO:0000781 ... P62805 38242129
    880700 8sn3:G (3.8) BS01 dna ? GO:0000786 ... P04908 38242129
    880701 8sn3:G (3.8) BS02 dna ? GO:0000786 ... P04908 38242129
    880702 8sn3:H (3.8) BS01 dna ? GO:0000786 ... P06899 38242129
    880703 8sn3:H (3.8) BS02 dna ? GO:0000786 ... P06899 38242129
    880704 8sn3:K (3.8) BS01 ZN 2.3.2.27 N/A Q8IYW5 38242129
    880705 8sn3:K (3.8) BS02 ZN 2.3.2.27 N/A Q8IYW5 38242129
    880706 8sn3:L (3.8) BS01 dna 2.3.2.23
    2.3.2.24
    GO:0000122 ... P61077 38242129
    880707 8sn3:M (3.8) BS01 dna ? N/A P0CG47 38242129
    880708 8sn4:A (3.7) BS01 dna ? GO:0000786 ... P68431 38242129
    880709 8sn4:A (3.7) BS02 dna ? GO:0000786 ... P68431 38242129
    880710 8sn4:B (3.7) BS01 dna ? GO:0000781 ... P62805 38242129
    880711 8sn4:B (3.7) BS02 dna ? GO:0000781 ... P62805 38242129
    880712 8sn4:C (3.7) BS01 dna ? GO:0000786 ... P04908 38242129
    880713 8sn4:C (3.7) BS02 dna ? GO:0000786 ... P04908 38242129
    880714 8sn4:D (3.7) BS01 dna ? GO:0000786 ... P06899 38242129
    880715 8sn4:D (3.7) BS02 dna ? GO:0000786 ... P06899 38242129
    880716 8sn4:E (3.7) BS01 dna ? GO:0000786 ... P68431 38242129
    880717 8sn4:E (3.7) BS02 dna ? GO:0000786 ... P68431 38242129
    880718 8sn4:F (3.7) BS01 dna ? GO:0000781 ... P62805 38242129
    880719 8sn4:F (3.7) BS02 dna ? GO:0000781 ... P62805 38242129
    880720 8sn4:G (3.7) BS01 dna ? GO:0000786 ... P04908 38242129
    880721 8sn4:G (3.7) BS02 dna ? GO:0000786 ... P04908 38242129
    880722 8sn4:H (3.7) BS01 dna ? GO:0000786 ... P06899 38242129
    880723 8sn4:H (3.7) BS02 dna ? GO:0000786 ... P06899 38242129
    880724 8sn4:K (3.7) BS01 ZN 2.3.2.27 N/A Q8IYW5 38242129
    880725 8sn4:K (3.7) BS02 ZN 2.3.2.27 N/A Q8IYW5 38242129
    880726 8sn4:M (3.7) BS01 dna ? N/A P0CG47 38242129
    880727 8sn5:A (3.9) BS01 dna ? GO:0000786 ... P68431 38242129
    880728 8sn5:A (3.9) BS02 dna ? GO:0000786 ... P68431 38242129
    880729 8sn5:B (3.9) BS01 dna ? GO:0000781 ... P62805 38242129
    880730 8sn5:B (3.9) BS02 dna ? GO:0000781 ... P62805 38242129
    880731 8sn5:C (3.9) BS01 dna ? GO:0000786 ... P04908 38242129
    880732 8sn5:C (3.9) BS02 dna ? GO:0000786 ... P04908 38242129
    880733 8sn5:D (3.9) BS01 dna ? GO:0000786 ... P06899 38242129
    880734 8sn5:D (3.9) BS02 dna ? GO:0000786 ... P06899 38242129
    880735 8sn5:E (3.9) BS01 dna ? GO:0000786 ... P68431 38242129
    880736 8sn5:E (3.9) BS02 dna ? GO:0000786 ... P68431 38242129
    880737 8sn5:F (3.9) BS01 dna ? GO:0000781 ... P62805 38242129
    880738 8sn5:F (3.9) BS02 dna ? GO:0000781 ... P62805 38242129
    880739 8sn5:G (3.9) BS01 dna ? GO:0000786 ... P04908 38242129
    880740 8sn5:G (3.9) BS02 dna ? GO:0000786 ... P04908 38242129
    880741 8sn5:H (3.9) BS01 dna ? GO:0000786 ... P06899 38242129
    880742 8sn5:H (3.9) BS02 dna ? GO:0000786 ... P06899 38242129
    880743 8sn5:K (3.9) BS01 ZN 2.3.2.27 N/A Q8IYW5 38242129
    880744 8sn5:K (3.9) BS02 ZN 2.3.2.27 N/A Q8IYW5 38242129
    880745 8sn6:A (3.7) BS01 dna ? GO:0000786 ... P68431 38242129
    880746 8sn6:A (3.7) BS02 dna ? GO:0000786 ... P68431 38242129
    880747 8sn6:B (3.7) BS01 dna ? GO:0000781 ... P62805 38242129
    880748 8sn6:C (3.7) BS01 dna ? GO:0000786 ... P04908 38242129
    880749 8sn6:C (3.7) BS02 dna ? GO:0000786 ... P04908 38242129
    880750 8sn6:D (3.7) BS01 dna ? GO:0000786 ... P06899 38242129
    880751 8sn6:D (3.7) BS02 dna ? GO:0000786 ... P06899 38242129
    880752 8sn6:E (3.7) BS01 dna ? GO:0000786 ... P68431 38242129
    880753 8sn6:E (3.7) BS02 dna ? GO:0000786 ... P68431 38242129
    880754 8sn6:F (3.7) BS01 dna ? GO:0000781 ... P62805 38242129
    880755 8sn6:F (3.7) BS02 dna ? GO:0000781 ... P62805 38242129
    880756 8sn6:G (3.7) BS01 dna ? GO:0000786 ... P04908 38242129
    880757 8sn6:G (3.7) BS02 dna ? GO:0000786 ... P04908 38242129
    880758 8sn6:H (3.7) BS01 dna ? GO:0000786 ... P06899 38242129
    880759 8sn6:H (3.7) BS02 dna ? GO:0000786 ... P06899 38242129
    880760 8sn6:K (3.7) BS01 ZN 2.3.2.27 N/A Q8IYW5 38242129
    880761 8sn6:K (3.7) BS02 ZN 2.3.2.27 N/A Q8IYW5 38242129
    880762 8sn7:A (3.7) BS01 dna ? GO:0000786 ... P68431 38242129
    880763 8sn7:A (3.7) BS02 dna ? GO:0000786 ... P68431 38242129
    880764 8sn7:B (3.7) BS01 dna ? GO:0000781 ... P62805 38242129
    880765 8sn7:B (3.7) BS02 dna ? GO:0000781 ... P62805 38242129
    880766 8sn7:C (3.7) BS01 dna ? GO:0000786 ... P04908 38242129
    880767 8sn7:C (3.7) BS02 dna ? GO:0000786 ... P04908 38242129
    880768 8sn7:D (3.7) BS01 dna ? GO:0000786 ... P06899 38242129
    880769 8sn7:D (3.7) BS02 dna ? GO:0000786 ... P06899 38242129
    880770 8sn7:E (3.7) BS01 dna ? GO:0000786 ... P68431 38242129
    880771 8sn7:E (3.7) BS02 dna ? GO:0000786 ... P68431 38242129
    880772 8sn7:F (3.7) BS01 dna ? GO:0000781 ... P62805 38242129
    880773 8sn7:F (3.7) BS02 dna ? GO:0000781 ... P62805 38242129
    880774 8sn7:G (3.7) BS01 dna ? GO:0000786 ... P04908 38242129
    880775 8sn7:G (3.7) BS02 dna ? GO:0000786 ... P04908 38242129
    880776 8sn7:H (3.7) BS01 dna ? GO:0000786 ... P06899 38242129
    880777 8sn7:H (3.7) BS02 dna ? GO:0000786 ... P06899 38242129
    880778 8sn7:K (3.7) BS01 ZN 2.3.2.27 N/A Q8IYW5 38242129
    880779 8sn7:K (3.7) BS02 ZN 2.3.2.27 N/A Q8IYW5 38242129
    880780 8sn8:A (3.7) BS01 dna ? GO:0000786 ... P68431 38242129
    880781 8sn8:A (3.7) BS02 dna ? GO:0000786 ... P68431 38242129
    880782 8sn8:B (3.7) BS01 dna ? GO:0000781 ... P62805 38242129
    880783 8sn8:B (3.7) BS02 dna ? GO:0000781 ... P62805 38242129
    880784 8sn8:C (3.7) BS01 dna ? GO:0000786 ... P04908 38242129
    880785 8sn8:C (3.7) BS02 dna ? GO:0000786 ... P04908 38242129
    880786 8sn8:D (3.7) BS01 dna ? GO:0000786 ... P06899 38242129
    880787 8sn8:E (3.7) BS01 dna ? GO:0000786 ... P68431 38242129
    880788 8sn8:E (3.7) BS02 dna ? GO:0000786 ... P68431 38242129
    880789 8sn8:F (3.7) BS01 dna ? GO:0000781 ... P62805 38242129
    880790 8sn8:G (3.7) BS01 dna ? GO:0000786 ... P04908 38242129
    880791 8sn8:G (3.7) BS02 dna ? GO:0000786 ... P04908 38242129
    880792 8sn8:H (3.7) BS01 dna ? GO:0000786 ... P06899 38242129
    880793 8sn8:H (3.7) BS02 dna ? GO:0000786 ... P06899 38242129
    880794 8sn8:K (3.7) BS01 ZN 2.3.2.27 N/A Q8IYW5 38242129
    880795 8sn8:K (3.7) BS02 ZN 2.3.2.27 N/A Q8IYW5 38242129
    880796 8sn9:A (3.9) BS01 dna ? GO:0000786 ... P68431 38242129
    880797 8sn9:A (3.9) BS02 dna ? GO:0000786 ... P68431 38242129
    880798 8sn9:B (3.9) BS01 dna ? GO:0000781 ... P62805 38242129
    880799 8sn9:B (3.9) BS02 dna ? GO:0000781 ... P62805 38242129
    880800 8sn9:C (3.9) BS01 dna ? GO:0000786 ... P04908 38242129

    Reference:
  • Chengxin Zhang, Xi Zhang, Lydia Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).