SEQ2FUN

BioLiP
Download all results in tab-seperated text for 1072681 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.
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    # PDB
    (Resolution Å)
    Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    882001 8srj:A (3.74) BS03 CLR ? N/A F2UB89 38773335
    882002 8srj:B (3.74) BS01 CLR ? N/A F2UB89 38773335
    882003 8srj:B (3.74) BS02 CLR ? N/A F2UB89 38773335
    882004 8srj:B (3.74) BS03 CLR ? N/A F2UB89 38773335
    882005 8srj:C (3.74) BS01 CLR ? N/A F2UB89 38773335
    882006 8srj:C (3.74) BS02 CLR ? N/A F2UB89 38773335
    882007 8srj:C (3.74) BS03 CLR ? N/A F2UB89 38773335
    882008 8srj:D (3.74) BS01 CLR ? N/A F2UB89 38773335
    882009 8srj:D (3.74) BS02 CLR ? N/A F2UB89 38773335
    882010 8srj:D (3.74) BS03 CLR ? N/A F2UB89 38773335
    882011 8srk:A (4.14) BS01 APR ? N/A F2UB89 38773335
    882012 8srk:A (4.14) BS02 CA ? N/A F2UB89 38773335
    882013 8srk:A (4.14) BS03 CLR ? N/A F2UB89 38773335
    882014 8srk:A (4.14) BS04 CLR ? N/A F2UB89 38773335
    882015 8srk:A (4.14) BS05 CLR ? N/A F2UB89 38773335
    882016 8srk:A (4.14) BS06 CLR ? N/A F2UB89 38773335
    882017 8srk:B (4.14) BS01 CLR ? N/A F2UB89 38773335
    882018 8srk:B (4.14) BS02 APR ? N/A F2UB89 38773335
    882019 8srk:B (4.14) BS03 CA ? N/A F2UB89 38773335
    882020 8srk:B (4.14) BS04 CLR ? N/A F2UB89 38773335
    882021 8srk:B (4.14) BS05 CLR ? N/A F2UB89 38773335
    882022 8srk:B (4.14) BS06 CLR ? N/A F2UB89 38773335
    882023 8srk:C (4.14) BS01 CLR ? N/A F2UB89 38773335
    882024 8srk:C (4.14) BS02 APR ? N/A F2UB89 38773335
    882025 8srk:C (4.14) BS03 CA ? N/A F2UB89 38773335
    882026 8srk:C (4.14) BS04 CLR ? N/A F2UB89 38773335
    882027 8srk:C (4.14) BS05 CLR ? N/A F2UB89 38773335
    882028 8srk:C (4.14) BS06 CLR ? N/A F2UB89 38773335
    882029 8srk:D (4.14) BS01 CLR ? N/A F2UB89 38773335
    882030 8srk:D (4.14) BS02 CLR ? N/A F2UB89 38773335
    882031 8srk:D (4.14) BS03 CLR ? N/A F2UB89 38773335
    882032 8srk:D (4.14) BS04 APR ? N/A F2UB89 38773335
    882033 8srk:D (4.14) BS05 CA ? N/A F2UB89 38773335
    882034 8srk:D (4.14) BS06 CLR ? N/A F2UB89 38773335
    882035 8srl:A (2.01) BS01 FE2 N/A GO:0010436 ... Q7S860 40147775
    882036 8srl:A (2.01) BS02 PIT N/A GO:0010436 ... Q7S860 40147775
    882037 8srl:B (2.01) BS01 FE2 N/A GO:0010436 ... Q7S860 40147775
    882038 8srl:B (2.01) BS02 PIT N/A GO:0010436 ... Q7S860 40147775
    882039 8srl:C (2.01) BS01 FE2 N/A GO:0010436 ... Q7S860 40147775
    882040 8srl:C (2.01) BS02 PIT N/A GO:0010436 ... Q7S860 40147775
    882041 8srl:D (2.01) BS01 FE2 N/A GO:0010436 ... Q7S860 40147775
    882042 8srl:D (2.01) BS02 PIT N/A GO:0010436 ... Q7S860 40147775
    882043 8sro:A (3.3) BS01 dna ? GO:0003700 ... Q99JB6 38030726
    882044 8sro:A (3.3) BS02 dna ? GO:0003700 ... Q99JB6 38030726
    882045 8sro:B (3.3) BS01 dna ? GO:0003700 ... Q99JB6 38030726
    882046 8sro:B (3.3) BS02 dna ? GO:0003700 ... Q99JB6 38030726
    882047 8sro:C (3.3) BS01 dna ? GO:0003700 ... Q99JB6 38030726
    882048 8sro:C (3.3) BS02 dna ? GO:0003700 ... Q99JB6 38030726
    882049 8sro:D (3.3) BS01 dna ? GO:0003700 ... Q99JB6 38030726
    882050 8sro:D (3.3) BS02 dna ? GO:0003700 ... Q99JB6 38030726
    882051 8srp:A (3.7) BS01 dna ? GO:0003700 ... Q99JB6 38030726
    882052 8srp:A (3.7) BS02 dna ? GO:0003700 ... Q99JB6 38030726
    882053 8srp:B (3.7) BS01 dna ? GO:0003700 ... Q99JB6 38030726
    882054 8srp:B (3.7) BS02 dna ? GO:0003700 ... Q99JB6 38030726
    882055 8srp:C (3.7) BS01 dna ? GO:0003700 ... Q99JB6 38030726
    882056 8srp:C (3.7) BS02 dna ? GO:0003700 ... Q99JB6 38030726
    882057 8srp:D (3.7) BS01 dna ? GO:0003700 ... Q99JB6 38030726
    882058 8srp:D (3.7) BS02 dna ? GO:0003700 ... Q99JB6 38030726
    882059 8srp:E (3.7) BS01 dna ? GO:0003700 ... Q99JB6 38030726
    882060 8srp:F (3.7) BS01 dna ? GO:0003700 ... Q99JB6 38030726
    882061 8srp:F (3.7) BS02 dna ? GO:0003700 ... Q99JB6 38030726
    882062 8srp:G (3.7) BS01 dna ? GO:0003700 ... Q99JB6 38030726
    882063 8srp:J (3.7) BS01 dna ? GO:0003700 ... Q99JB6 38030726
    882064 8srp:J (3.7) BS02 dna ? GO:0003700 ... Q99JB6 38030726
    882065 8srr:B (3.22) BS01 M7G N/A GO:0000184 ... P52298 39282949
    882066 8srs:A (2.79) BS01 rna 3.1.-.- GO:0003676 ... Q99ZW2 38688943
    882067 8srs:A (2.79) BS02 dna 3.1.-.- GO:0003676 ... Q99ZW2 38688943
    882068 8srs:A (2.79) BS03 dna 3.1.-.- GO:0003676 ... Q99ZW2 38688943
    882069 8srs:A (2.79) BS04 dna 3.1.-.- GO:0003676 ... Q99ZW2 38688943
    882070 8srs:A (2.79) BS05 MG 3.1.-.- GO:0003676 ... Q99ZW2 38688943
    882071 8srs:A (2.79) BS06 MG 3.1.-.- GO:0003676 ... Q99ZW2 38688943
    882072 8sru:A (1.5) BS01 peptide N/A GO:0003824 ... Q2G0Q8 39705018
    882073 8sru:B (1.5) BS01 peptide N/A GO:0003824 ... Q2G0Q8 39705018
    882074 8sru:C (1.5) BS01 peptide N/A GO:0003824 ... Q2G0Q8 39705018
    882075 8sru:D (1.5) BS01 peptide N/A GO:0003824 ... Q2G0Q8 39705018
    882076 8srv:A (1.32) BS01 peptide N/A GO:0003824 ... Q2G0Q8 39705018
    882077 8srv:B (1.32) BS01 peptide N/A GO:0003824 ... Q2G0Q8 39705018
    882078 8srw:A (2.15) BS01 peptide N/A GO:0003824 ... Q2G0Q8 39705018
    882079 8srw:B (2.15) BS01 peptide N/A GO:0003824 ... Q2G0Q8 39705018
    882080 8srw:C (2.15) BS01 peptide N/A GO:0003824 ... Q2G0Q8 39705018
    882081 8srw:D (2.15) BS01 peptide N/A GO:0003824 ... Q2G0Q8 39705018
    882082 8srx:A (2.09) BS01 K6G ? GO:0042981 ... Q16611 38088212
    882083 8srx:A (2.09) BS02 ZN ? GO:0042981 ... Q16611 38088212
    882084 8srx:A (2.09) BS03 K6G ? GO:0042981 ... Q16611 38088212
    882085 8srx:B (2.09) BS01 K6G ? GO:0042981 ... Q07812 38088212
    882086 8srx:B (2.09) BS02 K6G ? GO:0042981 ... Q07812 38088212
    882087 8srx:C (2.09) BS01 K6G ? GO:0042981 ... Q16611 38088212
    882088 8srx:C (2.09) BS02 K6G ? GO:0042981 ... Q16611 38088212
    882089 8srx:D (2.09) BS01 K6G ? GO:0042981 ... Q07812 38088212
    882090 8ss0:A (2.25) BS01 HEM 1.14.14.154 GO:0004497 ... Q16850 38206808
    882091 8ss0:A (2.25) BS02 WQR 1.14.14.154 GO:0004497 ... Q16850 38206808
    882092 8ss0:B (2.25) BS01 HEM 1.14.14.154 GO:0004497 ... Q16850 38206808
    882093 8ss0:B (2.25) BS02 WQR 1.14.14.154 GO:0004497 ... Q16850 38206808
    882094 8ss2:A (3.58) BS01 ZK1 ? GO:0000149 ... P19491
    Q8VHW8
    37653241
    882095 8ss2:A (3.58) BS02 CLR ? GO:0000149 ... P19491
    Q8VHW8
    37653241
    882096 8ss2:A (3.58) BS03 AJP ? GO:0000149 ... P19491
    Q8VHW8
    37653241
    882097 8ss2:A (3.58) BS04 SPD ? GO:0000149 ... P19491
    Q8VHW8
    37653241
    882098 8ss2:B (3.58) BS01 ZK1 ? GO:0000149 ... P19491
    Q8VHW8
    37653241
    882099 8ss2:C (3.58) BS01 ZK1 ? GO:0000149 ... P19491
    Q8VHW8
    37653241
    882100 8ss2:C (3.58) BS02 CLR ? GO:0000149 ... P19491
    Q8VHW8
    37653241
    882101 8ss2:C (3.58) BS03 AJP ? GO:0000149 ... P19491
    Q8VHW8
    37653241
    882102 8ss2:D (3.58) BS01 ZK1 ? GO:0000149 ... P19491
    Q8VHW8
    37653241
    882103 8ss3:A (3.21) BS01 ZK1 ? GO:0000149 ... P19491
    Q8VHW8
    37653241
    882104 8ss3:A (3.21) BS02 CLR ? GO:0000149 ... P19491
    Q8VHW8
    37653241
    882105 8ss3:A (3.21) BS03 AJP ? GO:0000149 ... P19491
    Q8VHW8
    37653241
    882106 8ss3:A (3.21) BS04 AJP ? GO:0000149 ... P19491
    Q8VHW8
    37653241
    882107 8ss3:A (3.21) BS05 CLR ? GO:0000149 ... P19491
    Q8VHW8
    37653241
    882108 8ss3:A (3.21) BS06 AJP ? GO:0000149 ... P19491
    Q8VHW8
    37653241
    882109 8ss3:A (3.21) BS07 SPD ? GO:0000149 ... P19491
    Q8VHW8
    37653241
    882110 8ss3:B (3.21) BS01 ZK1 ? GO:0000149 ... P19491
    Q8VHW8
    37653241
    882111 8ss3:C (3.21) BS01 ZK1 ? GO:0000149 ... P19491
    Q8VHW8
    37653241
    882112 8ss3:C (3.21) BS02 CLR ? GO:0000149 ... P19491
    Q8VHW8
    37653241
    882113 8ss3:C (3.21) BS03 AJP ? GO:0000149 ... P19491
    Q8VHW8
    37653241
    882114 8ss3:C (3.21) BS04 AJP ? GO:0000149 ... P19491
    Q8VHW8
    37653241
    882115 8ss3:C (3.21) BS05 CLR ? GO:0000149 ... P19491
    Q8VHW8
    37653241
    882116 8ss3:C (3.21) BS06 AJP ? GO:0000149 ... P19491
    Q8VHW8
    37653241
    882117 8ss3:D (3.21) BS01 AJP ? GO:0000149 ... P19491
    Q8VHW8
    37653241
    882118 8ss3:D (3.21) BS02 ZK1 ? GO:0000149 ... P19491
    Q8VHW8
    37653241
    882119 8ss4:A (3.3) BS01 SPD ? GO:0000149 ... P19491
    Q8VHW8
    37653241
    882120 8ss6:A (3.01) BS01 6ZP ? GO:0000149 ... P19491
    Q8VHW8
    37653241
    882121 8ss6:A (3.01) BS02 ZK1 ? GO:0000149 ... P19491
    Q8VHW8
    37653241
    882122 8ss6:A (3.01) BS03 CLR ? GO:0000149 ... P19491
    Q8VHW8
    37653241
    882123 8ss6:A (3.01) BS04 CLR ? GO:0000149 ... P19491
    Q8VHW8
    37653241
    882124 8ss6:B (3.01) BS01 6ZP ? GO:0000149 ... P19491
    Q8VHW8
    37653241
    882125 8ss6:B (3.01) BS02 6ZP ? GO:0000149 ... P19491
    Q8VHW8
    37653241
    882126 8ss6:B (3.01) BS03 ZK1 ? GO:0000149 ... P19491
    Q8VHW8
    37653241
    882127 8ss6:B (3.01) BS04 CLR ? GO:0000149 ... P19491
    Q8VHW8
    37653241
    882128 8ss6:B (3.01) BS05 SPD ? GO:0000149 ... P19491
    Q8VHW8
    37653241
    882129 8ss6:C (3.01) BS01 6ZP ? GO:0000149 ... P19491
    Q8VHW8
    37653241
    882130 8ss6:C (3.01) BS02 ZK1 ? GO:0000149 ... P19491
    Q8VHW8
    37653241
    882131 8ss6:C (3.01) BS03 CLR ? GO:0000149 ... P19491
    Q8VHW8
    37653241
    882132 8ss6:C (3.01) BS04 CLR ? GO:0000149 ... P19491
    Q8VHW8
    37653241
    882133 8ss6:D (3.01) BS01 6ZP ? GO:0000149 ... P19491
    Q8VHW8
    37653241
    882134 8ss6:D (3.01) BS02 6ZP ? GO:0000149 ... P19491
    Q8VHW8
    37653241
    882135 8ss6:D (3.01) BS03 ZK1 ? GO:0000149 ... P19491
    Q8VHW8
    37653241
    882136 8ss6:D (3.01) BS04 CLR ? GO:0000149 ... P19491
    Q8VHW8
    37653241
    882137 8ss7:A (2.76) BS01 6ZP ? GO:0000149 ... P19491
    Q8VHW8
    37653241
    882138 8ss7:A (2.76) BS02 ZK1 ? GO:0000149 ... P19491
    Q8VHW8
    37653241
    882139 8ss7:A (2.76) BS03 CLR ? GO:0000149 ... P19491
    Q8VHW8
    37653241
    882140 8ss7:A (2.76) BS04 CLR ? GO:0000149 ... P19491
    Q8VHW8
    37653241
    882141 8ss7:A (2.76) BS05 CLR ? GO:0000149 ... P19491
    Q8VHW8
    37653241
    882142 8ss7:B (2.76) BS01 6ZP ? GO:0000149 ... P19491
    Q8VHW8
    37653241
    882143 8ss7:B (2.76) BS02 ZK1 ? GO:0000149 ... P19491
    Q8VHW8
    37653241
    882144 8ss7:B (2.76) BS03 CLR ? GO:0000149 ... P19491
    Q8VHW8
    37653241
    882145 8ss7:C (2.76) BS01 6ZP ? GO:0000149 ... P19491
    Q8VHW8
    37653241
    882146 8ss7:C (2.76) BS02 ZK1 ? GO:0000149 ... P19491
    Q8VHW8
    37653241
    882147 8ss7:C (2.76) BS03 CLR ? GO:0000149 ... P19491
    Q8VHW8
    37653241
    882148 8ss7:C (2.76) BS04 CLR ? GO:0000149 ... P19491
    Q8VHW8
    37653241
    882149 8ss7:D (2.76) BS01 6ZP ? GO:0000149 ... P19491
    Q8VHW8
    37653241
    882150 8ss7:D (2.76) BS02 6ZP ? GO:0000149 ... P19491
    Q8VHW8
    37653241
    882151 8ss7:D (2.76) BS03 ZK1 ? GO:0000149 ... P19491
    Q8VHW8
    37653241
    882152 8ss7:D (2.76) BS04 CLR ? GO:0000149 ... P19491
    Q8VHW8
    37653241
    882153 8ss8:A (2.81) BS01 6ZP ? GO:0000149 ... P19491
    Q8VHW8
    37653241
    882154 8ss8:A (2.81) BS02 ZK1 ? GO:0000149 ... P19491
    Q8VHW8
    37653241
    882155 8ss8:B (2.81) BS01 6ZP ? GO:0000149 ... P19491
    Q8VHW8
    37653241
    882156 8ss8:B (2.81) BS02 ZK1 ? GO:0000149 ... P19491
    Q8VHW8
    37653241
    882157 8ss8:C (2.81) BS01 6ZP ? GO:0000149 ... P19491
    Q8VHW8
    37653241
    882158 8ss8:C (2.81) BS02 ZK1 ? GO:0000149 ... P19491
    Q8VHW8
    37653241
    882159 8ss8:C (2.81) BS03 CLR ? GO:0000149 ... P19491
    Q8VHW8
    37653241
    882160 8ss8:D (2.81) BS01 6ZP ? GO:0000149 ... P19491
    Q8VHW8
    37653241
    882161 8ss8:D (2.81) BS02 ZK1 ? GO:0000149 ... P19491
    Q8VHW8
    37653241
    882162 8ss9:A (2.72) BS01 6ZP ? GO:0000149 ... P19491
    Q8VHW8
    37653241
    882163 8ss9:A (2.72) BS02 ZK1 ? GO:0000149 ... P19491
    Q8VHW8
    37653241
    882164 8ss9:A (2.72) BS03 CLR ? GO:0000149 ... P19491
    Q8VHW8
    37653241
    882165 8ss9:B (2.72) BS01 6ZP ? GO:0000149 ... P19491
    Q8VHW8
    37653241
    882166 8ss9:B (2.72) BS02 6ZP ? GO:0000149 ... P19491
    Q8VHW8
    37653241
    882167 8ss9:B (2.72) BS03 ZK1 ? GO:0000149 ... P19491
    Q8VHW8
    37653241
    882168 8ss9:C (2.72) BS01 6ZP ? GO:0000149 ... P19491
    Q8VHW8
    37653241
    882169 8ss9:C (2.72) BS02 ZK1 ? GO:0000149 ... P19491
    Q8VHW8
    37653241
    882170 8ss9:C (2.72) BS03 CLR ? GO:0000149 ... P19491
    Q8VHW8
    37653241
    882171 8ss9:D (2.72) BS01 6ZP ? GO:0000149 ... P19491
    Q8VHW8
    37653241
    882172 8ss9:D (2.72) BS02 6ZP ? GO:0000149 ... P19491
    Q8VHW8
    37653241
    882173 8ss9:D (2.72) BS03 ZK1 ? GO:0000149 ... P19491
    Q8VHW8
    37653241
    882174 8ssa:A (3.88) BS01 GLU ? GO:0000149 ... P19491
    Q8VHW8
    37653241
    882175 8ssa:A (3.88) BS02 SPD ? GO:0000149 ... P19491
    Q8VHW8
    37653241
    882176 8ssa:B (3.88) BS01 GLU ? GO:0000149 ... P19491
    Q8VHW8
    37653241
    882177 8ssa:C (3.88) BS01 GLU ? GO:0000149 ... P19491
    Q8VHW8
    37653241
    882178 8ssa:C (3.88) BS02 SPD ? GO:0000149 ... P19491
    Q8VHW8
    37653241
    882179 8ssa:D (3.88) BS01 GLU ? GO:0000149 ... P19491
    Q8VHW8
    37653241
    882180 8ssb:A (3.66) BS01 GLU ? GO:0000149 ... P19491
    Q8VHW8
    37653241
    882181 8ssb:A (3.66) BS02 SPD ? GO:0000149 ... P19491
    Q8VHW8
    37653241
    882182 8ssb:B (3.66) BS01 GLU ? GO:0000149 ... P19491
    Q8VHW8
    37653241
    882183 8ssb:C (3.66) BS01 SPD ? GO:0000149 ... P19491
    Q8VHW8
    37653241
    882184 8ssb:C (3.66) BS02 GLU ? GO:0000149 ... P19491
    Q8VHW8
    37653241
    882185 8ssb:D (3.66) BS01 GLU ? GO:0000149 ... P19491
    Q8VHW8
    37653241
    882186 8sse:A (3.15) BS01 B12 2.1.1.13 GO:0008705 ... Q5SKM5 37821448
    882187 8sse:B (3.15) BS01 B12 2.1.1.13 GO:0008705 ... Q5SKM5 37821448
    882188 8sse:C (3.15) BS01 B12 2.1.1.13 GO:0008705 ... Q5SKM5 37821448
    882189 8sse:D (3.15) BS01 B12 2.1.1.13 GO:0008705 ... Q5SKM5 37821448
    882190 8sse:E (3.15) BS01 B12 2.1.1.13 GO:0008705 ... Q5SKM5 37821448
    882191 8sse:F (3.15) BS01 B12 2.1.1.13 GO:0008705 ... Q5SKM5 37821448
    882192 8ssh:A (3.2) BS01 3WF ? GO:0003677 ... P39897 38326294
    882193 8ssh:B (3.2) BS01 3WF ? GO:0003677 ... P39897 38326294
    882194 8ssh:C (3.2) BS01 3WF ? GO:0003677 ... P39897 38326294
    882195 8ssh:D (3.2) BS01 3WF ? GO:0003677 ... P39897 38326294
    882196 8ssi:A (2.5) BS01 AYE ? N/A Q63K53 38870903
    882197 8ssi:C (2.5) BS01 AYE ? N/A Q63K53 38870903
    882198 8ssk:A (1.9) BS01 CA ? GO:0005524 ... A0A482PFX0 N/A
    882199 8ssk:B (1.9) BS01 CA ? GO:0005524 ... A0A482PFX0 N/A
    882200 8ssk:C (1.9) BS01 CA ? GO:0005524 ... A0A482PFX0 N/A

    Reference:
  • Chengxin Zhang, Xi Zhang, Lydia Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).