SEQ2FUN

BioLiP
Download all results in tab-seperated text for 942758 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
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  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
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    # PDB
    (Resolution Å)
    Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    883201 8u72:E (3.15) BS01 rna ? GO:0003676 ... A0A1I7NFD7 38844755
    883202 8u72:E (3.15) BS02 dna ? GO:0003676 ... A0A1I7NFD7 38844755
    883203 8u72:F (3.15) BS01 rna ? GO:0007165 ... A0A1I7NFG5 38844755
    883204 8u72:F (3.15) BS02 dna ? GO:0007165 ... A0A1I7NFG5 38844755
    883205 8u72:G (3.15) BS01 rna ? GO:0003676 ... A0A1I7NFD7 38844755
    883206 8u72:G (3.15) BS02 dna ? GO:0003676 ... A0A1I7NFD7 38844755
    883207 8u72:H (3.15) BS01 rna ? GO:0007165 ... A0A1I7NFG5 38844755
    883208 8u72:H (3.15) BS02 dna ? GO:0007165 ... A0A1I7NFG5 38844755
    883209 8u72:I (3.15) BS01 rna ? GO:0003676 ... A0A1I7NFD7 38844755
    883210 8u72:I (3.15) BS02 dna ? GO:0003676 ... A0A1I7NFD7 38844755
    883211 8u77:A (1.93) BS01 peptide N/A N/A P35189 38914563
    883212 8u77:A (1.93) BS02 peptide N/A N/A P35189 38914563
    883213 8u77:C (1.93) BS01 peptide N/A N/A P35189 38914563
    883214 8u77:C (1.93) BS02 peptide N/A N/A P35189 38914563
    883215 8u77:E (1.93) BS01 peptide N/A N/A P35189 38914563
    883216 8u77:E (1.93) BS02 peptide N/A N/A P35189 38914563
    883217 8u77:G (1.93) BS01 peptide N/A N/A P35189 38914563
    883218 8u77:G (1.93) BS02 peptide N/A N/A P35189 38914563
    883219 8u7b:B (2.66) BS01 PRO ? GO:0007165 ... A0A1I7NFG5 38844755
    883220 8u7b:B (2.66) BS02 PRO ? GO:0007165 ... A0A1I7NFG5 38844755
    883221 8u7b:B (2.66) BS03 PRO ? GO:0007165 ... A0A1I7NFG5 38844755
    883222 8u7b:B (2.66) BS04 PRO ? GO:0007165 ... A0A1I7NFG5 38844755
    883223 8u7b:B (2.66) BS05 PRO ? GO:0007165 ... A0A1I7NFG5 38844755
    883224 8u7b:C (2.66) BS01 MN ? GO:0003676 ... A0A1I7NFD7 38844755
    883225 8u7b:C (2.66) BS02 PRO ? GO:0003676 ... A0A1I7NFD7 38844755
    883226 8u7c:A (1.44) BS01 9JE N/A N/A N/A 39909030
    883227 8u7c:A (1.44) BS02 PRO N/A N/A N/A 39909030
    883228 8u7c:A (1.44) BS03 9JE N/A N/A N/A 39909030
    883229 8u7c:B (1.44) BS01 9JE N/A N/A N/A 39909030
    883230 8u7c:B (1.44) BS02 PRO N/A N/A N/A 39909030
    883231 8u7c:D (1.44) BS01 9JE N/A N/A N/A 39909030
    883232 8u7c:D (1.44) BS02 9JE N/A N/A N/A 39909030
    883233 8u7c:D (1.44) BS03 9JE N/A N/A N/A 39909030
    883234 8u7e:A (2.63) BS01 VXE 3.1.3.48 N/A Q8TF42 38252624
    883235 8u7e:C (2.63) BS01 VXE 3.1.3.48 N/A Q8TF42 38252624
    883236 8u7e:D (2.63) BS01 VXE 3.1.3.48 N/A Q8TF42 38252624
    883237 8u7h:C (3.8) BS01 GDP 2.7.11.1
    3.6.5.-
    GO:0004672 ... Q5S007 38263358
    883238 8u7h:C (3.8) BS02 A0T 2.7.11.1
    3.6.5.-
    GO:0004672 ... Q5S007 38263358
    883239 8u7j:I (3.02) BS01 PO4 N/A GO:0006520 ... Q2G0Q1 38782204
    883240 8u7j:K (3.02) BS01 PO4 N/A GO:0006520 ... Q2G0Q1 38782204
    883241 8u7j:L (3.02) BS01 PO4 N/A GO:0006520 ... Q2G0Q1 38782204
    883242 8u7j:M (3.02) BS01 GLN N/A GO:0004359 ... Q2G0Q0 38782204
    883243 8u7j:N (3.02) BS01 GLN N/A GO:0004359 ... Q2G0Q0 38782204
    883244 8u7j:O (3.02) BS01 GLN N/A GO:0004359 ... Q2G0Q0 38782204
    883245 8u7j:P (3.02) BS01 GLN N/A GO:0004359 ... Q2G0Q0 38782204
    883246 8u7j:Q (3.02) BS01 GLN N/A GO:0004359 ... Q2G0Q0 38782204
    883247 8u7j:R (3.02) BS01 GLN N/A GO:0004359 ... Q2G0Q0 38782204
    883248 8u7j:S (3.02) BS01 GLN N/A GO:0004359 ... Q2G0Q0 38782204
    883249 8u7j:T (3.02) BS01 GLN N/A GO:0004359 ... Q2G0Q0 38782204
    883250 8u7j:U (3.02) BS01 GLN N/A GO:0004359 ... Q2G0Q0 38782204
    883251 8u7j:V (3.02) BS01 GLN N/A GO:0004359 ... Q2G0Q0 38782204
    883252 8u7j:W (3.02) BS01 GLN N/A GO:0004359 ... Q2G0Q0 38782204
    883253 8u7j:X (3.02) BS01 GLN N/A GO:0004359 ... Q2G0Q0 38782204
    883254 8u7l:A (3.6) BS01 GDP 2.7.11.1
    3.6.5.-
    GO:0000139 ... Q5S007 38263358
    883255 8u7l:A (3.6) BS02 T3X 2.7.11.1
    3.6.5.-
    GO:0000139 ... Q5S007 38263358
    883256 8u7l:B (3.6) BS01 GDP 2.7.11.1
    3.6.5.-
    GO:0000139 ... Q5S007 38263358
    883257 8u7l:B (3.6) BS02 T3X 2.7.11.1
    3.6.5.-
    GO:0000139 ... Q5S007 38263358
    883258 8u7m:A (3.1) BS01 GTP 1.1.1.205 GO:0000166 ... P20839 38323936
    883259 8u7m:A (3.1) BS02 GTP 1.1.1.205 GO:0000166 ... P20839 38323936
    883260 8u7m:A (3.1) BS03 ATP 1.1.1.205 GO:0000166 ... P20839 38323936
    883261 8u7m:A (3.1) BS04 IMP 1.1.1.205 GO:0000166 ... P20839 38323936
    883262 8u7m:A (3.1) BS05 NAD 1.1.1.205 GO:0000166 ... P20839 38323936
    883263 8u7m:A (3.1) BS06 NAD 1.1.1.205 GO:0000166 ... P20839 38323936
    883264 8u7m:B (3.1) BS01 NAD 1.1.1.205 GO:0000166 ... P20839 38323936
    883265 8u7m:B (3.1) BS02 GTP 1.1.1.205 GO:0000166 ... P20839 38323936
    883266 8u7m:B (3.1) BS03 GTP 1.1.1.205 GO:0000166 ... P20839 38323936
    883267 8u7m:B (3.1) BS04 ATP 1.1.1.205 GO:0000166 ... P20839 38323936
    883268 8u7m:B (3.1) BS05 IMP 1.1.1.205 GO:0000166 ... P20839 38323936
    883269 8u7m:B (3.1) BS06 NAD 1.1.1.205 GO:0000166 ... P20839 38323936
    883270 8u7m:C (3.1) BS01 NAD 1.1.1.205 GO:0000166 ... P20839 38323936
    883271 8u7m:C (3.1) BS02 GTP 1.1.1.205 GO:0000166 ... P20839 38323936
    883272 8u7m:C (3.1) BS03 GTP 1.1.1.205 GO:0000166 ... P20839 38323936
    883273 8u7m:C (3.1) BS04 ATP 1.1.1.205 GO:0000166 ... P20839 38323936
    883274 8u7m:C (3.1) BS05 IMP 1.1.1.205 GO:0000166 ... P20839 38323936
    883275 8u7m:C (3.1) BS06 NAD 1.1.1.205 GO:0000166 ... P20839 38323936
    883276 8u7m:D (3.1) BS01 NAD 1.1.1.205 GO:0000166 ... P20839 38323936
    883277 8u7m:D (3.1) BS02 GTP 1.1.1.205 GO:0000166 ... P20839 38323936
    883278 8u7m:D (3.1) BS03 GTP 1.1.1.205 GO:0000166 ... P20839 38323936
    883279 8u7m:D (3.1) BS04 ATP 1.1.1.205 GO:0000166 ... P20839 38323936
    883280 8u7m:D (3.1) BS05 IMP 1.1.1.205 GO:0000166 ... P20839 38323936
    883281 8u7m:D (3.1) BS06 NAD 1.1.1.205 GO:0000166 ... P20839 38323936
    883282 8u7m:E (3.1) BS01 GTP 1.1.1.205 GO:0000166 ... P20839 38323936
    883283 8u7m:E (3.1) BS02 GTP 1.1.1.205 GO:0000166 ... P20839 38323936
    883284 8u7m:E (3.1) BS03 ATP 1.1.1.205 GO:0000166 ... P20839 38323936
    883285 8u7m:E (3.1) BS04 IMP 1.1.1.205 GO:0000166 ... P20839 38323936
    883286 8u7m:E (3.1) BS05 NAD 1.1.1.205 GO:0000166 ... P20839 38323936
    883287 8u7m:E (3.1) BS06 NAD 1.1.1.205 GO:0000166 ... P20839 38323936
    883288 8u7m:F (3.1) BS01 NAD 1.1.1.205 GO:0000166 ... P20839 38323936
    883289 8u7m:F (3.1) BS02 GTP 1.1.1.205 GO:0000166 ... P20839 38323936
    883290 8u7m:F (3.1) BS03 GTP 1.1.1.205 GO:0000166 ... P20839 38323936
    883291 8u7m:F (3.1) BS04 ATP 1.1.1.205 GO:0000166 ... P20839 38323936
    883292 8u7m:F (3.1) BS05 IMP 1.1.1.205 GO:0000166 ... P20839 38323936
    883293 8u7m:F (3.1) BS06 NAD 1.1.1.205 GO:0000166 ... P20839 38323936
    883294 8u7m:G (3.1) BS01 NAD 1.1.1.205 GO:0000166 ... P20839 38323936
    883295 8u7m:G (3.1) BS02 GTP 1.1.1.205 GO:0000166 ... P20839 38323936
    883296 8u7m:G (3.1) BS03 GTP 1.1.1.205 GO:0000166 ... P20839 38323936
    883297 8u7m:G (3.1) BS04 ATP 1.1.1.205 GO:0000166 ... P20839 38323936
    883298 8u7m:G (3.1) BS05 IMP 1.1.1.205 GO:0000166 ... P20839 38323936
    883299 8u7m:G (3.1) BS06 NAD 1.1.1.205 GO:0000166 ... P20839 38323936
    883300 8u7m:H (3.1) BS01 NAD 1.1.1.205 GO:0000166 ... P20839 38323936
    883301 8u7m:H (3.1) BS02 GTP 1.1.1.205 GO:0000166 ... P20839 38323936
    883302 8u7m:H (3.1) BS03 GTP 1.1.1.205 GO:0000166 ... P20839 38323936
    883303 8u7m:H (3.1) BS04 ATP 1.1.1.205 GO:0000166 ... P20839 38323936
    883304 8u7m:H (3.1) BS05 IMP 1.1.1.205 GO:0000166 ... P20839 38323936
    883305 8u7m:H (3.1) BS06 NAD 1.1.1.205 GO:0000166 ... P20839 38323936
    883306 8u7n:B () BS01 MG N/A N/A N/A N/A
    883307 8u7q:A (3.3) BS01 GTP 1.1.1.205 GO:0000166 ... P20839 38323936
    883308 8u7q:A (3.3) BS02 NAD 1.1.1.205 GO:0000166 ... P20839 38323936
    883309 8u7q:A (3.3) BS03 IMP 1.1.1.205 GO:0000166 ... P20839 38323936
    883310 8u7q:A (3.3) BS04 ATP 1.1.1.205 GO:0000166 ... P20839 38323936
    883311 8u7q:A (3.3) BS05 GTP 1.1.1.205 GO:0000166 ... P20839 38323936
    883312 8u7q:B (3.3) BS01 GTP 1.1.1.205 GO:0000166 ... P20839 38323936
    883313 8u7q:B (3.3) BS02 NAD 1.1.1.205 GO:0000166 ... P20839 38323936
    883314 8u7q:B (3.3) BS03 IMP 1.1.1.205 GO:0000166 ... P20839 38323936
    883315 8u7q:B (3.3) BS04 ATP 1.1.1.205 GO:0000166 ... P20839 38323936
    883316 8u7q:B (3.3) BS05 GTP 1.1.1.205 GO:0000166 ... P20839 38323936
    883317 8u7q:C (3.3) BS01 GTP 1.1.1.205 GO:0000166 ... P20839 38323936
    883318 8u7q:C (3.3) BS02 NAD 1.1.1.205 GO:0000166 ... P20839 38323936
    883319 8u7q:C (3.3) BS03 IMP 1.1.1.205 GO:0000166 ... P20839 38323936
    883320 8u7q:C (3.3) BS04 ATP 1.1.1.205 GO:0000166 ... P20839 38323936
    883321 8u7q:C (3.3) BS05 GTP 1.1.1.205 GO:0000166 ... P20839 38323936
    883322 8u7q:D (3.3) BS01 GTP 1.1.1.205 GO:0000166 ... P20839 38323936
    883323 8u7q:D (3.3) BS02 NAD 1.1.1.205 GO:0000166 ... P20839 38323936
    883324 8u7q:D (3.3) BS03 IMP 1.1.1.205 GO:0000166 ... P20839 38323936
    883325 8u7q:D (3.3) BS04 ATP 1.1.1.205 GO:0000166 ... P20839 38323936
    883326 8u7q:D (3.3) BS05 GTP 1.1.1.205 GO:0000166 ... P20839 38323936
    883327 8u7q:E (3.3) BS01 GTP 1.1.1.205 GO:0000166 ... P20839 38323936
    883328 8u7q:E (3.3) BS02 NAD 1.1.1.205 GO:0000166 ... P20839 38323936
    883329 8u7q:E (3.3) BS03 IMP 1.1.1.205 GO:0000166 ... P20839 38323936
    883330 8u7q:E (3.3) BS04 ATP 1.1.1.205 GO:0000166 ... P20839 38323936
    883331 8u7q:E (3.3) BS05 GTP 1.1.1.205 GO:0000166 ... P20839 38323936
    883332 8u7q:F (3.3) BS01 GTP 1.1.1.205 GO:0000166 ... P20839 38323936
    883333 8u7q:F (3.3) BS02 NAD 1.1.1.205 GO:0000166 ... P20839 38323936
    883334 8u7q:F (3.3) BS03 IMP 1.1.1.205 GO:0000166 ... P20839 38323936
    883335 8u7q:F (3.3) BS04 ATP 1.1.1.205 GO:0000166 ... P20839 38323936
    883336 8u7q:F (3.3) BS05 GTP 1.1.1.205 GO:0000166 ... P20839 38323936
    883337 8u7q:G (3.3) BS01 GTP 1.1.1.205 GO:0000166 ... P20839 38323936
    883338 8u7q:G (3.3) BS02 NAD 1.1.1.205 GO:0000166 ... P20839 38323936
    883339 8u7q:G (3.3) BS03 IMP 1.1.1.205 GO:0000166 ... P20839 38323936
    883340 8u7q:G (3.3) BS04 ATP 1.1.1.205 GO:0000166 ... P20839 38323936
    883341 8u7q:G (3.3) BS05 GTP 1.1.1.205 GO:0000166 ... P20839 38323936
    883342 8u7q:H (3.3) BS01 GTP 1.1.1.205 GO:0000166 ... P20839 38323936
    883343 8u7q:H (3.3) BS02 NAD 1.1.1.205 GO:0000166 ... P20839 38323936
    883344 8u7q:H (3.3) BS03 IMP 1.1.1.205 GO:0000166 ... P20839 38323936
    883345 8u7q:H (3.3) BS04 ATP 1.1.1.205 GO:0000166 ... P20839 38323936
    883346 8u7q:H (3.3) BS05 GTP 1.1.1.205 GO:0000166 ... P20839 38323936
    883347 8u7t:A (3.3) BS01 peptide N/A GO:0000837 ... P25694 39209885
    883348 8u7t:A (3.3) BS02 08T N/A GO:0000837 ... P25694 39209885
    883349 8u7t:A (3.3) BS03 08T N/A GO:0000837 ... P25694 39209885
    883350 8u7t:B (3.3) BS01 peptide N/A GO:0000837 ... P25694 39209885
    883351 8u7t:B (3.3) BS02 08T N/A GO:0000837 ... P25694 39209885
    883352 8u7t:B (3.3) BS03 08T N/A GO:0000837 ... P25694 39209885
    883353 8u7t:B (3.3) BS04 08T N/A GO:0000837 ... P25694 39209885
    883354 8u7t:C (3.3) BS01 peptide N/A GO:0000837 ... P25694 39209885
    883355 8u7t:C (3.3) BS02 08T N/A GO:0000837 ... P25694 39209885
    883356 8u7t:C (3.3) BS03 08T N/A GO:0000837 ... P25694 39209885
    883357 8u7t:C (3.3) BS04 08T N/A GO:0000837 ... P25694 39209885
    883358 8u7t:C (3.3) BS05 08T N/A GO:0000837 ... P25694 39209885
    883359 8u7t:D (3.3) BS01 peptide N/A GO:0000837 ... P25694 39209885
    883360 8u7t:D (3.3) BS02 08T N/A GO:0000837 ... P25694 39209885
    883361 8u7t:D (3.3) BS03 08T N/A GO:0000837 ... P25694 39209885
    883362 8u7t:D (3.3) BS04 08T N/A GO:0000837 ... P25694 39209885
    883363 8u7t:E (3.3) BS01 peptide N/A GO:0000837 ... P25694 39209885
    883364 8u7t:E (3.3) BS02 08T N/A GO:0000837 ... P25694 39209885
    883365 8u7t:E (3.3) BS03 ADP N/A GO:0000837 ... P25694 39209885
    883366 8u7t:E (3.3) BS04 ADP N/A GO:0000837 ... P25694 39209885
    883367 8u7v:A (3.3) BS01 GTP 1.1.1.205 GO:0000166 ... P20839 38323936
    883368 8u7v:A (3.3) BS02 NAD 1.1.1.205 GO:0000166 ... P20839 38323936
    883369 8u7v:A (3.3) BS03 IMP 1.1.1.205 GO:0000166 ... P20839 38323936
    883370 8u7v:A (3.3) BS04 ATP 1.1.1.205 GO:0000166 ... P20839 38323936
    883371 8u7v:A (3.3) BS05 GTP 1.1.1.205 GO:0000166 ... P20839 38323936
    883372 8u7v:B (3.3) BS01 GTP 1.1.1.205 GO:0000166 ... P20839 38323936
    883373 8u7v:B (3.3) BS02 NAD 1.1.1.205 GO:0000166 ... P20839 38323936
    883374 8u7v:B (3.3) BS03 IMP 1.1.1.205 GO:0000166 ... P20839 38323936
    883375 8u7v:B (3.3) BS04 ATP 1.1.1.205 GO:0000166 ... P20839 38323936
    883376 8u7v:B (3.3) BS05 GTP 1.1.1.205 GO:0000166 ... P20839 38323936
    883377 8u7v:C (3.3) BS01 GTP 1.1.1.205 GO:0000166 ... P20839 38323936
    883378 8u7v:C (3.3) BS02 NAD 1.1.1.205 GO:0000166 ... P20839 38323936
    883379 8u7v:C (3.3) BS03 IMP 1.1.1.205 GO:0000166 ... P20839 38323936
    883380 8u7v:C (3.3) BS04 ATP 1.1.1.205 GO:0000166 ... P20839 38323936
    883381 8u7v:C (3.3) BS05 GTP 1.1.1.205 GO:0000166 ... P20839 38323936
    883382 8u7v:D (3.3) BS01 GTP 1.1.1.205 GO:0000166 ... P20839 38323936
    883383 8u7v:D (3.3) BS02 NAD 1.1.1.205 GO:0000166 ... P20839 38323936
    883384 8u7v:D (3.3) BS03 IMP 1.1.1.205 GO:0000166 ... P20839 38323936
    883385 8u7v:D (3.3) BS04 ATP 1.1.1.205 GO:0000166 ... P20839 38323936
    883386 8u7v:D (3.3) BS05 GTP 1.1.1.205 GO:0000166 ... P20839 38323936
    883387 8u7v:E (3.3) BS01 GTP 1.1.1.205 GO:0000166 ... P20839 38323936
    883388 8u7v:E (3.3) BS02 NAD 1.1.1.205 GO:0000166 ... P20839 38323936
    883389 8u7v:E (3.3) BS03 IMP 1.1.1.205 GO:0000166 ... P20839 38323936
    883390 8u7v:E (3.3) BS04 ATP 1.1.1.205 GO:0000166 ... P20839 38323936
    883391 8u7v:E (3.3) BS05 GTP 1.1.1.205 GO:0000166 ... P20839 38323936
    883392 8u7v:F (3.3) BS01 GTP 1.1.1.205 GO:0000166 ... P20839 38323936
    883393 8u7v:F (3.3) BS02 NAD 1.1.1.205 GO:0000166 ... P20839 38323936
    883394 8u7v:F (3.3) BS03 IMP 1.1.1.205 GO:0000166 ... P20839 38323936
    883395 8u7v:F (3.3) BS04 ATP 1.1.1.205 GO:0000166 ... P20839 38323936
    883396 8u7v:F (3.3) BS05 GTP 1.1.1.205 GO:0000166 ... P20839 38323936
    883397 8u7v:G (3.3) BS01 GTP 1.1.1.205 GO:0000166 ... P20839 38323936
    883398 8u7v:G (3.3) BS02 NAD 1.1.1.205 GO:0000166 ... P20839 38323936
    883399 8u7v:G (3.3) BS03 IMP 1.1.1.205 GO:0000166 ... P20839 38323936
    883400 8u7v:G (3.3) BS04 ATP 1.1.1.205 GO:0000166 ... P20839 38323936

    Reference:
  • Chengxin Zhang, Xi Zhang, Lydia Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).