SEQ2FUN

BioLiP
Download all results in tab-seperated text for 942758 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.
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    # PDB
    (Resolution Å)
    Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    884001 8uar:L (2.99) BS01 ZN N/A GO:0008270 ... N/A N/A
    884002 8uar:L (2.99) BS02 ZN N/A GO:0008270 ... N/A N/A
    884003 8uar:L (2.99) BS03 W46 N/A GO:0008270 ... N/A N/A
    884004 8uas:A (2.2) BS01 ZN N/A GO:0008270 ... N/A N/A
    884005 8uas:A (2.2) BS02 ZN N/A GO:0008270 ... N/A N/A
    884006 8uas:B (2.2) BS01 ZN N/A GO:0008270 ... N/A N/A
    884007 8uas:B (2.2) BS02 ZN N/A GO:0008270 ... N/A N/A
    884008 8uas:C (2.2) BS01 ZN N/A GO:0008270 ... N/A N/A
    884009 8uas:C (2.2) BS02 ZN N/A GO:0008270 ... N/A N/A
    884010 8uas:C (2.2) BS03 W3O N/A GO:0008270 ... N/A N/A
    884011 8uas:D (2.2) BS01 ZN N/A GO:0008270 ... N/A N/A
    884012 8uas:D (2.2) BS02 ZN N/A GO:0008270 ... N/A N/A
    884013 8uas:D (2.2) BS03 W3O N/A GO:0008270 ... N/A N/A
    884014 8uas:E (2.2) BS01 ZN N/A GO:0008270 ... N/A N/A
    884015 8uas:E (2.2) BS02 ZN N/A GO:0008270 ... N/A N/A
    884016 8uas:E (2.2) BS03 W3O N/A GO:0008270 ... N/A N/A
    884017 8uas:F (2.2) BS01 ZN N/A GO:0008270 ... N/A N/A
    884018 8uas:F (2.2) BS02 ZN N/A GO:0008270 ... N/A N/A
    884019 8uas:F (2.2) BS03 W3O N/A GO:0008270 ... N/A N/A
    884020 8uas:G (2.2) BS01 ZN N/A GO:0008270 ... N/A N/A
    884021 8uas:G (2.2) BS02 ZN N/A GO:0008270 ... N/A N/A
    884022 8uas:G (2.2) BS03 W3O N/A GO:0008270 ... N/A N/A
    884023 8uas:H (2.2) BS01 ZN N/A GO:0008270 ... N/A N/A
    884024 8uas:H (2.2) BS02 ZN N/A GO:0008270 ... N/A N/A
    884025 8uas:H (2.2) BS03 W3O N/A GO:0008270 ... N/A N/A
    884026 8uas:I (2.2) BS01 ZN N/A GO:0008270 ... N/A N/A
    884027 8uas:I (2.2) BS02 ZN N/A GO:0008270 ... N/A N/A
    884028 8uas:I (2.2) BS03 W3O N/A GO:0008270 ... N/A N/A
    884029 8uas:J (2.2) BS01 ZN N/A GO:0008270 ... N/A N/A
    884030 8uas:J (2.2) BS02 ZN N/A GO:0008270 ... N/A N/A
    884031 8uas:J (2.2) BS03 W3O N/A GO:0008270 ... N/A N/A
    884032 8uas:K (2.2) BS01 ZN N/A GO:0008270 ... N/A N/A
    884033 8uas:K (2.2) BS02 ZN N/A GO:0008270 ... N/A N/A
    884034 8uas:K (2.2) BS03 W3O N/A GO:0008270 ... N/A N/A
    884035 8uas:L (2.2) BS01 W3O N/A GO:0008270 ... N/A N/A
    884036 8uas:L (2.2) BS02 ZN N/A GO:0008270 ... N/A N/A
    884037 8uas:L (2.2) BS03 ZN N/A GO:0008270 ... N/A N/A
    884038 8uat:A (2.76) BS01 FMN N/A GO:0000166 ... E8PRF1 N/A
    884039 8uat:A (2.76) BS02 W3X N/A GO:0000166 ... E8PRF1 N/A
    884040 8uat:B (2.76) BS01 FMN N/A GO:0000166 ... E8PRF1 N/A
    884041 8uat:B (2.76) BS02 W3X N/A GO:0000166 ... E8PRF1 N/A
    884042 8uat:C (2.76) BS01 FMN N/A GO:0000166 ... E8PRF1 N/A
    884043 8uat:D (2.76) BS01 FMN N/A GO:0000166 ... E8PRF1 N/A
    884044 8uat:E (2.76) BS01 FMN N/A GO:0000166 ... E8PRF1 N/A
    884045 8uat:E (2.76) BS02 W3X N/A GO:0000166 ... E8PRF1 N/A
    884046 8uat:F (2.76) BS01 FMN N/A GO:0000166 ... E8PRF1 N/A
    884047 8uat:F (2.76) BS02 W3X N/A GO:0000166 ... E8PRF1 N/A
    884048 8uat:G (2.76) BS01 FMN N/A GO:0000166 ... E8PRF1 N/A
    884049 8uat:H (2.76) BS01 FMN N/A GO:0000166 ... E8PRF1 N/A
    884050 8uau:A (5.7) BS01 peptide N/A GO:0004057 ... O95260 39068213
    884051 8uau:A (5.7) BS02 rna N/A GO:0004057 ... O95260 39068213
    884052 8uax:B (1.9) BS01 WFH N/A GO:0004519 ... P61823 38300702
    884053 8uay:A (1.8) BS01 WF9 N/A GO:0004519 ... P61823 38300702
    884054 8uaz:A (1.76) BS01 WFU N/A GO:0004519 ... P61823 38300702
    884055 8uaz:B (1.76) BS01 WFU N/A GO:0004519 ... P61823 38300702
    884056 8ub0:A (2.0) BS01 AMP N/A GO:0004519 ... P61823 38300702
    884057 8ub0:B (2.0) BS01 A1BA4 N/A GO:0004519 ... P61823 38300702
    884058 8ub1:B (1.53) BS01 WFL N/A GO:0004519 ... P61823 38300702
    884059 8ub2:A (1.6) BS01 AMP N/A GO:0004519 ... P61823 38300702
    884060 8ub4:A (2.9) BS01 peptide N/A GO:0000837 ... P25694 39209885
    884061 8ub4:A (2.9) BS02 08T N/A GO:0000837 ... P25694 39209885
    884062 8ub4:A (2.9) BS03 08T N/A GO:0000837 ... P25694 39209885
    884063 8ub4:B (2.9) BS01 peptide N/A GO:0000837 ... P25694 39209885
    884064 8ub4:B (2.9) BS02 peptide N/A GO:0000837 ... P25694 39209885
    884065 8ub4:B (2.9) BS03 08T N/A GO:0000837 ... P25694 39209885
    884066 8ub4:B (2.9) BS04 08T N/A GO:0000837 ... P25694 39209885
    884067 8ub4:B (2.9) BS05 08T N/A GO:0000837 ... P25694 39209885
    884068 8ub4:C (2.9) BS01 peptide N/A GO:0000837 ... P25694 39209885
    884069 8ub4:C (2.9) BS02 peptide N/A GO:0000837 ... P25694 39209885
    884070 8ub4:C (2.9) BS03 08T N/A GO:0000837 ... P25694 39209885
    884071 8ub4:C (2.9) BS04 08T N/A GO:0000837 ... P25694 39209885
    884072 8ub4:C (2.9) BS05 08T N/A GO:0000837 ... P25694 39209885
    884073 8ub4:C (2.9) BS06 08T N/A GO:0000837 ... P25694 39209885
    884074 8ub4:D (2.9) BS01 peptide N/A GO:0000837 ... P25694 39209885
    884075 8ub4:D (2.9) BS02 peptide N/A GO:0000837 ... P25694 39209885
    884076 8ub4:D (2.9) BS03 08T N/A GO:0000837 ... P25694 39209885
    884077 8ub4:D (2.9) BS04 08T N/A GO:0000837 ... P25694 39209885
    884078 8ub4:D (2.9) BS05 08T N/A GO:0000837 ... P25694 39209885
    884079 8ub4:E (2.9) BS01 peptide N/A GO:0000837 ... P25694 39209885
    884080 8ub4:E (2.9) BS02 08T N/A GO:0000837 ... P25694 39209885
    884081 8ub4:E (2.9) BS03 08T N/A GO:0000837 ... P25694 39209885
    884082 8ub4:E (2.9) BS04 ADP N/A GO:0000837 ... P25694 39209885
    884083 8ub4:E (2.9) BS05 ADP N/A GO:0000837 ... P25694 39209885
    884084 8ub7:A (3.2) BS01 rna N/A GO:0003964 ... Q775D8 39779855
    884085 8ub7:A (3.2) BS02 rna N/A GO:0003964 ... Q775D8 39779855
    884086 8ub7:A (3.2) BS03 rna N/A GO:0003964 ... Q775D8 39779855
    884087 8ub7:A (3.2) BS04 DCP N/A GO:0003964 ... Q775D8 39779855
    884088 8ub7:A (3.2) BS05 MG N/A GO:0003964 ... Q775D8 39779855
    884089 8ub7:B (3.2) BS01 rna N/A GO:0005737 ... Q775D7
    Q9FA38
    39779855
    884090 8ub7:B (3.2) BS02 rna N/A GO:0005737 ... Q775D7
    Q9FA38
    39779855
    884091 8ub7:C (3.2) BS01 rna N/A GO:0005737 ... Q775D7
    Q9FA38
    39779855
    884092 8ub7:D (3.2) BS01 rna N/A GO:0005737 ... Q775D7
    Q9FA38
    39779855
    884093 8ub7:E (3.2) BS01 rna N/A GO:0005737 ... Q775D7
    Q9FA38
    39779855
    884094 8ub7:F (3.2) BS01 rna N/A GO:0005737 ... Q775D7
    Q9FA38
    39779855
    884095 8ub8:A (3.28) BS01 rna N/A GO:0003964 ... Q775D8 39779855
    884096 8ub8:A (3.28) BS02 rna N/A GO:0003964 ... Q775D8 39779855
    884097 8ub8:A (3.28) BS03 rna N/A GO:0003964 ... Q775D8 39779855
    884098 8ub8:B (3.28) BS01 rna N/A GO:0005737 ... Q775D7
    Q9FA38
    39779855
    884099 8ub8:B (3.28) BS02 rna N/A GO:0005737 ... Q775D7
    Q9FA38
    39779855
    884100 8ub8:C (3.28) BS01 rna N/A GO:0005737 ... Q775D7
    Q9FA38
    39779855
    884101 8ub8:D (3.28) BS01 rna N/A GO:0005737 ... Q775D7
    Q9FA38
    39779855
    884102 8ub8:E (3.28) BS01 rna N/A GO:0005737 ... Q775D7
    Q9FA38
    39779855
    884103 8ub8:F (3.28) BS01 rna N/A GO:0005737 ... Q775D7
    Q9FA38
    39779855
    884104 8ub9:A (3.07) BS01 rna N/A GO:0003964 ... Q775D8 39779855
    884105 8ub9:A (3.07) BS02 rna N/A GO:0003964 ... Q775D8 39779855
    884106 8ub9:A (3.07) BS03 rna N/A GO:0003964 ... Q775D8 39779855
    884107 8ub9:B (3.07) BS01 rna N/A GO:0005737 ... Q775D7
    Q9FA38
    39779855
    884108 8ub9:B (3.07) BS02 rna N/A GO:0005737 ... Q775D7
    Q9FA38
    39779855
    884109 8ub9:C (3.07) BS01 rna N/A GO:0005737 ... Q775D7
    Q9FA38
    39779855
    884110 8ub9:D (3.07) BS01 rna N/A GO:0005737 ... Q775D7
    Q9FA38
    39779855
    884111 8ub9:E (3.07) BS01 rna N/A GO:0005737 ... Q775D7
    Q9FA38
    39779855
    884112 8ub9:F (3.07) BS01 rna N/A GO:0005737 ... Q775D7
    Q9FA38
    39779855
    884113 8uba:A (3.2) BS01 rna N/A GO:0003964 ... Q775D8 39779855
    884114 8uba:A (3.2) BS02 rna N/A GO:0003964 ... Q775D8 39779855
    884115 8uba:A (3.2) BS03 rna N/A GO:0003964 ... Q775D8 39779855
    884116 8uba:B (3.2) BS01 rna N/A GO:0005737 ... Q775D7
    Q9FA38
    39779855
    884117 8uba:B (3.2) BS02 rna N/A GO:0005737 ... Q775D7
    Q9FA38
    39779855
    884118 8uba:C (3.2) BS01 rna N/A GO:0005737 ... Q775D7
    Q9FA38
    39779855
    884119 8uba:D (3.2) BS01 rna N/A GO:0005737 ... Q775D7
    Q9FA38
    39779855
    884120 8uba:E (3.2) BS01 rna N/A GO:0005737 ... Q775D7
    Q9FA38
    39779855
    884121 8uba:F (3.2) BS01 rna N/A GO:0005737 ... Q775D7
    Q9FA38
    39779855
    884122 8ubb:A (3.23) BS01 rna N/A GO:0003964 ... Q775D8 39779855
    884123 8ubb:A (3.23) BS02 rna N/A GO:0003964 ... Q775D8 39779855
    884124 8ubb:B (3.23) BS01 rna N/A GO:0005737 ... Q775D7
    Q9FA38
    39779855
    884125 8ubb:B (3.23) BS02 rna N/A GO:0005737 ... Q775D7
    Q9FA38
    39779855
    884126 8ubb:C (3.23) BS01 rna N/A GO:0005737 ... Q775D7
    Q9FA38
    39779855
    884127 8ubb:D (3.23) BS01 rna N/A GO:0005737 ... Q775D7
    Q9FA38
    39779855
    884128 8ubb:E (3.23) BS01 rna N/A GO:0005737 ... Q775D7
    Q9FA38
    39779855
    884129 8ubb:F (3.23) BS01 rna N/A GO:0005737 ... Q775D7
    Q9FA38
    39779855
    884130 8ubc:A (3.29) BS01 rna N/A GO:0003964 ... Q775D8 39779855
    884131 8ubc:B (3.29) BS01 rna N/A GO:0005737 ... Q775D7
    Q9FA38
    39779855
    884132 8ubc:B (3.29) BS02 rna N/A GO:0005737 ... Q775D7
    Q9FA38
    39779855
    884133 8ubc:C (3.29) BS01 rna N/A GO:0005737 ... Q775D7
    Q9FA38
    39779855
    884134 8ubc:D (3.29) BS01 rna N/A GO:0005737 ... Q775D7
    Q9FA38
    39779855
    884135 8ubc:E (3.29) BS01 rna N/A GO:0005737 ... Q775D7
    Q9FA38
    39779855
    884136 8ubc:F (3.29) BS01 rna N/A GO:0005737 ... Q775D7
    Q9FA38
    39779855
    884137 8ubd:A (3.05) BS01 rna N/A GO:0003964 ... Q775D8 39779855
    884138 8ubd:A (3.05) BS02 rna N/A GO:0003964 ... Q775D8 39779855
    884139 8ubd:A (3.05) BS03 rna N/A GO:0003964 ... Q775D8 39779855
    884140 8ubd:B (3.05) BS01 rna N/A GO:0005737 ... Q775D7
    Q9FA38
    39779855
    884141 8ubd:B (3.05) BS02 rna N/A GO:0005737 ... Q775D7
    Q9FA38
    39779855
    884142 8ubd:C (3.05) BS01 rna N/A GO:0005737 ... Q775D7
    Q9FA38
    39779855
    884143 8ubd:D (3.05) BS01 rna N/A GO:0005737 ... Q775D7
    Q9FA38
    39779855
    884144 8ubd:E (3.05) BS01 rna N/A GO:0005737 ... Q775D7
    Q9FA38
    39779855
    884145 8ubd:F (3.05) BS01 rna N/A GO:0005737 ... Q775D7
    Q9FA38
    39779855
    884146 8ube:A (3.05) BS01 rna N/A GO:0003964 ... Q775D8 39779855
    884147 8ube:A (3.05) BS02 rna N/A GO:0003964 ... Q775D8 39779855
    884148 8ube:A (3.05) BS03 rna N/A GO:0003964 ... Q775D8 39779855
    884149 8ube:B (3.05) BS01 rna N/A GO:0005737 ... Q775D7
    Q9FA38
    39779855
    884150 8ube:C (3.05) BS01 rna N/A GO:0005737 ... Q775D7
    Q9FA38
    39779855
    884151 8ube:D (3.05) BS01 rna N/A GO:0005737 ... Q775D7
    Q9FA38
    39779855
    884152 8ube:E (3.05) BS01 rna N/A GO:0005737 ... Q775D7
    Q9FA38
    39779855
    884153 8ube:F (3.05) BS01 rna N/A GO:0005737 ... Q775D7
    Q9FA38
    39779855
    884154 8ubf:A (3.61) BS01 rna N/A GO:0003964 ... Q775D8 39779855
    884155 8ubf:A (3.61) BS02 rna N/A GO:0003964 ... Q775D8 39779855
    884156 8ubf:B (3.61) BS01 rna N/A GO:0005737 ... Q775D7
    Q9FA38
    39779855
    884157 8ubf:C (3.61) BS01 rna N/A GO:0005737 ... Q775D7
    Q9FA38
    39779855
    884158 8ubf:D (3.61) BS01 rna N/A GO:0005737 ... Q775D7
    Q9FA38
    39779855
    884159 8ubf:E (3.61) BS01 rna N/A GO:0005737 ... Q775D7
    Q9FA38
    39779855
    884160 8ubf:F (3.61) BS01 rna N/A GO:0005737 ... Q775D7
    Q9FA38
    39779855
    884161 8ubq:A (2.001) BS01 W9H N/A GO:0003756 ... P0AEG4 N/A
    884162 8ubq:B (2.001) BS01 SW0 N/A GO:0003756 ... P0AEG4 N/A
    884163 8ubr:A (2.7) BS01 MG 5.6.1.6 GO:0005254 ... P13569 38422021
    884164 8ubr:A (2.7) BS02 ATP 5.6.1.6 GO:0005254 ... P13569 38422021
    884165 8ubr:A (2.7) BS03 ATP 5.6.1.6 GO:0005254 ... P13569 38422021
    884166 8ubr:A (2.7) BS04 LBN 5.6.1.6 GO:0005254 ... P13569 38422021
    884167 8ubr:A (2.7) BS05 CLR 5.6.1.6 GO:0005254 ... P13569 38422021
    884168 8ubr:A (2.7) BS06 WG5 5.6.1.6 GO:0005254 ... P13569 38422021
    884169 8ubr:A (2.7) BS07 MG 5.6.1.6 GO:0005254 ... P13569 38422021
    884170 8ubu:A (4.6) BS01 peptide N/A GO:0000082 ... Q13616 39504958
    884171 8ubu:H (4.6) BS01 peptide N/A GO:0000082 ... Q13616 39504958
    884172 8ubw:A (2.59) BS01 Y01 ? GO:0001568 ... Q9Y5Y0 38693265
    884173 8ubw:A (2.59) BS02 Y01 ? GO:0001568 ... Q9Y5Y0 38693265
    884174 8ubw:A (2.59) BS03 Y01 ? GO:0001568 ... Q9Y5Y0 38693265
    884175 8ubw:A (2.59) BS04 CHT ? GO:0001568 ... Q9Y5Y0 38693265
    884176 8ubx:A (2.5) BS01 ETA ? GO:0001568 ... Q9Y5Y0 38693265
    884177 8ubx:A (2.5) BS02 Y01 ? GO:0001568 ... Q9Y5Y0 38693265
    884178 8ubx:A (2.5) BS03 Y01 ? GO:0001568 ... Q9Y5Y0 38693265
    884179 8ubx:A (2.5) BS04 Y01 ? GO:0001568 ... Q9Y5Y0 38693265
    884180 8uby:A (2.67) BS01 Y01 ? GO:0001568 ... Q9Y5Y0 38693265
    884181 8uby:A (2.67) BS02 Y01 ? GO:0001568 ... Q9Y5Y0 38693265
    884182 8uby:A (2.67) BS03 Y01 ? GO:0001568 ... Q9Y5Y0 38693265
    884183 8uby:A (2.67) BS04 CHT ? GO:0001568 ... Q9Y5Y0 38693265
    884184 8ubz:A (3.02) BS01 Y01 ? GO:0001568 ... Q9Y5Y0 38693265
    884185 8ubz:A (3.02) BS02 Y01 ? GO:0001568 ... Q9Y5Y0 38693265
    884186 8ubz:A (3.02) BS03 CHT ? GO:0001568 ... Q9Y5Y0 38693265
    884187 8uc0:A (2.42) BS01 Y01 ? GO:0001568 ... Q9Y5Y0 38693265
    884188 8uc0:A (2.42) BS02 Y01 ? GO:0001568 ... Q9Y5Y0 38693265
    884189 8uc2:A (1.6) BS01 BEZ 1.13.12.19
    1.14.20.7
    GO:0009693 ... P32021 38577885
    884190 8uc2:A (1.6) BS02 CA 1.13.12.19
    1.14.20.7
    GO:0009693 ... P32021 38577885
    884191 8uc3:A (2.78) BS01 FMN 1.3.3.13 GO:0016491 ... Q8GED9 38678027
    884192 8uc3:A (2.78) BS02 FMN 1.3.3.13 GO:0016491 ... Q8GED9 38678027
    884193 8uc3:B (2.78) BS01 FMN 1.3.3.13 GO:0016491 ... Q8GED9 38678027
    884194 8uc3:B (2.78) BS02 FMN 1.3.3.13 GO:0016491 ... Q8GED9 38678027
    884195 8uc6:B (2.701) BS01 peptide 3.4.22.- N/A Q9Y6W3 37772788
    884196 8uc6:C (2.701) BS01 peptide 3.4.22.- N/A Q9Y6W3 37772788
    884197 8uc7:A (2.9) BS01 PFL N/A GO:0005216 ... O60741 39085604
    884198 8uc7:B (2.9) BS01 PFL N/A GO:0005216 ... O60741 39085604
    884199 8uc7:C (2.9) BS01 PFL N/A GO:0005216 ... O60741 39085604
    884200 8uc7:D (2.9) BS01 PFL N/A GO:0005216 ... O60741 39085604

    Reference:
  • Chengxin Zhang, Xi Zhang, Lydia Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).