SEQ2FUN

BioLiP
Download all results in tab-seperated text for 1072681 receptor-ligand interactions, whose format is explained at readme.txt.
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  • Hover over EC number to view the full name of enzymatic activity.
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    # PDB
    (Resolution Å)
    Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    884801 8t5h:F (3.3) BS02 rna N/A GO:0000027 ... P62399 38185325
    884802 8t5h:F (3.3) BS03 rna N/A GO:0000027 ... P62399 38185325
    884803 8t5h:G (3.3) BS01 rna N/A GO:0000027 ... P0AG55 38185325
    884804 8t5h:J (3.3) BS01 rna N/A GO:0002181 ... P0AA10 38185325
    884805 8t5h:K (3.3) BS01 rna N/A GO:0002181 ... P0ADY3 38185325
    884806 8t5h:L (3.3) BS01 rna N/A GO:0002181 ... P02413 38185325
    884807 8t5h:M (3.3) BS01 rna N/A GO:0000027 ... P0ADY7 38185325
    884808 8t5h:M (3.3) BS02 rna N/A GO:0000027 ... P0ADY7 38185325
    884809 8t5h:N (3.3) BS01 rna N/A GO:0000027 ... P0AG44 38185325
    884810 8t5h:O (3.3) BS01 rna N/A GO:0002181 ... P0C018 38185325
    884811 8t5h:O (3.3) BS02 rna N/A GO:0002181 ... P0C018 38185325
    884812 8t5h:P (3.3) BS01 rna N/A GO:0000027 ... P0A7K6 38185325
    884813 8t5h:P (3.3) BS02 rna N/A GO:0000027 ... P0A7K6 38185325
    884814 8t5h:Q (3.3) BS01 rna N/A GO:0000027 ... P0A7L3 38185325
    884815 8t5h:R (3.3) BS01 rna N/A GO:0002181 ... P0AG48 38185325
    884816 8t5h:S (3.3) BS01 rna N/A GO:0002181 ... P61175 38185325
    884817 8t5h:T (3.3) BS01 rna N/A GO:0000027 ... P0ADZ0 38185325
    884818 8t5h:U (3.3) BS01 rna N/A GO:0000027 ... P60624 38185325
    884819 8t5h:V (3.3) BS01 rna N/A GO:0000027 ... P68919 38185325
    884820 8t5h:W (3.3) BS01 rna N/A GO:0000027 ... P0A7L8 38185325
    884821 8t5h:W (3.3) BS02 rna N/A GO:0000027 ... P0A7L8 38185325
    884822 8t5h:X (3.3) BS01 rna N/A GO:0000027 ... P0A7M2 38185325
    884823 8t5h:Y (3.3) BS01 rna N/A GO:0000027 ... P0A7M6 38185325
    884824 8t5h:Z (3.3) BS01 rna N/A GO:0000027 ... P0AG51 38185325
    884825 8t5h:b (3.3) BS01 rna N/A GO:0003676 ... P0A7V3 38185325
    884826 8t5h:b (3.3) BS02 rna N/A GO:0003676 ... P0A7V3 38185325
    884827 8t5h:c (3.3) BS01 rna N/A GO:0000028 ... P0A7V8 38185325
    884828 8t5h:d (3.3) BS01 rna N/A GO:0000028 ... P0A7W1 38185325
    884829 8t5h:d (3.3) BS02 rna N/A GO:0000028 ... P0A7W1 38185325
    884830 8t5h:e (3.3) BS01 rna N/A GO:0003735 ... P02358 38185325
    884831 8t5h:f (3.3) BS01 rna N/A GO:0003723 ... P02359 38185325
    884832 8t5h:g (3.3) BS01 rna N/A GO:0000028 ... P0A7W7 38185325
    884833 8t5h:h (3.3) BS01 rna N/A GO:0002181 ... P0A7X3 38185325
    884834 8t5h:h (3.3) BS02 rna N/A GO:0002181 ... P0A7X3 38185325
    884835 8t5h:i (3.3) BS01 rna N/A GO:0000049 ... P0A7R5 38185325
    884836 8t5h:j (3.3) BS01 rna N/A GO:0002181 ... P0A7R9 38185325
    884837 8t5h:k (3.3) BS01 rna N/A GO:0000049 ... P0A7S3 38185325
    884838 8t5h:l (3.3) BS01 rna N/A GO:0000049 ... P0A7S9 38185325
    884839 8t5h:l (3.3) BS02 rna N/A GO:0000049 ... P0A7S9 38185325
    884840 8t5h:m (3.3) BS01 rna N/A GO:0000028 ... P0AG59 38185325
    884841 8t5h:n (3.3) BS01 rna N/A GO:0000028 ... P0ADZ4 38185325
    884842 8t5h:n (3.3) BS02 rna N/A GO:0000028 ... P0ADZ4 38185325
    884843 8t5h:o (3.3) BS01 rna N/A GO:0000028 ... P0A7T3 38185325
    884844 8t5h:p (3.3) BS01 rna N/A GO:0000028 ... P0AG63 38185325
    884845 8t5h:q (3.3) BS01 rna N/A GO:0003735 ... P0A7T7 38185325
    884846 8t5h:r (3.3) BS01 rna N/A GO:0003723 ... P0A7U3 38185325
    884847 8t5h:s (3.3) BS01 rna N/A GO:0000028 ... P0A7U7 38185325
    884848 8t5i:A (1.7) BS01 ZHF ? GO:0000122 ... P61964 N/A
    884849 8t5i:B (1.7) BS01 ZHF ? GO:0000122 ... P61964 N/A
    884850 8t5j:A (1.55) BS01 MG ? N/A B0TX44 N/A
    884851 8t5k:B (1.95) BS01 YGI ? GO:0002218 ... Q86WV6 37425806
    884852 8t5l:B (2.01) BS01 1SY ? GO:0002218 ... Q86WV6 37425806
    884853 8t5m:A (1.79) BS01 YIF ? GO:0005085 ... Q07890 38156904
    884854 8t5n:A (1.65) BS01 CA 6.1.1.14 GO:0000166 ... P9WFV7 40587479
    884855 8t5n:A (1.65) BS02 AMP 6.1.1.14 GO:0000166 ... P9WFV7 40587479
    884856 8t5p:A (2.5) BS01 peptide 2.3.2.27 GO:0001817 ... Q13114 38005906
    884857 8t5p:B (2.5) BS01 peptide 2.3.2.27 GO:0001817 ... Q13114 38005906
    884858 8t5p:D (2.5) BS01 peptide 2.3.2.27 GO:0001817 ... Q13114 38005906
    884859 8t5q:A (1.9) BS01 peptide 2.3.2.27 GO:0004842 ... Q12933 38005906
    884860 8t5q:B (1.9) BS01 peptide 2.3.2.27 GO:0004842 ... Q12933 38005906
    884861 8t5q:D (1.9) BS01 peptide 2.3.2.27 GO:0004842 ... Q12933 38005906
    884862 8t5r:A (2.12) BS01 6LH ? GO:0005085 ... Q07890 38156904
    884863 8t5s:A (2.9) BS01 rna 3.6.4.13 GO:0003676 ... G5EDI8 38747717
    884864 8t5s:A (2.9) BS02 rna 3.6.4.13 GO:0003676 ... G5EDI8 38747717
    884865 8t5s:A (2.9) BS03 ZN 3.6.4.13 GO:0003676 ... G5EDI8 38747717
    884866 8t5s:A (2.9) BS04 ADP 3.6.4.13 GO:0003676 ... G5EDI8 38747717
    884867 8t5u:A (3.13) BS01 ATP ? GO:0005524 ... Q9CZP5 38821922
    884868 8t5u:A (3.13) BS02 ATP ? GO:0005524 ... Q9CZP5 38821922
    884869 8t5u:B (3.13) BS01 ATP ? GO:0005524 ... Q9CZP5 38821922
    884870 8t5u:B (3.13) BS02 ATP ? GO:0005524 ... Q9CZP5 38821922
    884871 8t5u:C (3.13) BS01 ATP ? GO:0005524 ... Q9CZP5 38821922
    884872 8t5u:C (3.13) BS02 ATP ? GO:0005524 ... Q9CZP5 38821922
    884873 8t5u:D (3.13) BS01 ATP ? GO:0005524 ... Q9CZP5 38821922
    884874 8t5u:D (3.13) BS02 ATP ? GO:0005524 ... Q9CZP5 38821922
    884875 8t5u:E (3.13) BS01 ATP ? GO:0005524 ... Q9CZP5 38821922
    884876 8t5u:E (3.13) BS02 ATP ? GO:0005524 ... Q9CZP5 38821922
    884877 8t5u:F (3.13) BS01 ATP ? GO:0005524 ... Q9CZP5 38821922
    884878 8t5u:F (3.13) BS02 ATP ? GO:0005524 ... Q9CZP5 38821922
    884879 8t5u:G (3.13) BS01 ATP ? GO:0005524 ... Q9CZP5 38821922
    884880 8t5u:G (3.13) BS02 ATP ? GO:0005524 ... Q9CZP5 38821922
    884881 8t5v:A (1.79) BS01 MN N/A GO:0003723 ... C3W5S0 38190441
    884882 8t5v:A (1.79) BS02 MN N/A GO:0003723 ... C3W5S0 38190441
    884883 8t5v:A (1.79) BS03 E4Z N/A GO:0003723 ... C3W5S0 38190441
    884884 8t5w:A (1.65) BS01 MN 3.1.-.- GO:0003723 ... C3W5S0 38190441
    884885 8t5w:A (1.65) BS02 MN 3.1.-.- GO:0003723 ... C3W5S0 38190441
    884886 8t5w:A (1.65) BS03 E4Z 3.1.-.- GO:0003723 ... C3W5S0 38190441
    884887 8t5w:A (1.65) BS04 E4Z 3.1.-.- GO:0003723 ... C3W5S0 38190441
    884888 8t5y:A (1.44) BS01 CMP N/A GO:0000976 ... A0ACD6BAU9 37945601
    884889 8t5z:A (2.03) BS01 MN 3.1.-.- GO:0003723 ... C3W5S0 38190441
    884890 8t5z:A (2.03) BS02 MN 3.1.-.- GO:0003723 ... C3W5S0 38190441
    884891 8t65:A (2.09) BS01 rna ? N/A D5BXZ3 38200316
    884892 8t65:B (2.09) BS01 rna ? N/A D5BXZ3 38200316
    884893 8t66:A (1.85) BS01 rna ? N/A D5BXZ3 38200316
    884894 8t66:B (1.85) BS01 rna ? N/A D5BXZ3 38200316
    884895 8t67:A (2.08) BS01 MN 3.1.-.- GO:0003723 ... C3W5S0 38190441
    884896 8t67:A (2.08) BS02 MN 3.1.-.- GO:0003723 ... C3W5S0 38190441
    884897 8t68:A (1.9) BS01 ZN N/A GO:0042799 ... Q4FZB7 N/A
    884898 8t68:A (1.9) BS02 SAM N/A GO:0042799 ... Q4FZB7 N/A
    884899 8t68:A (1.9) BS03 ZKI N/A GO:0042799 ... Q4FZB7 N/A
    884900 8t69:A (2.89) BS01 YHL ? GO:0002552 ... Q05940 37914936
    884901 8t6a:A (3.17) BS01 YHR ? GO:0002552 ... Q05940 37914936
    884902 8t6b:A (3.72) BS01 SRO ? GO:0002552 ... Q05940 37914936
    884903 8t6d:A (2.4) BS01 YR2 3.1.3.48 GO:0004725 ... Q06124 37774359
    884904 8t6d:B (2.4) BS01 YR2 3.1.3.48 GO:0004725 ... Q06124 37774359
    884905 8t6f:A (1.56) BS01 GLC N/A GO:0005515 ... P0AEX9
    Q07820
    39179926
    884906 8t6f:A (1.56) BS02 GLC N/A GO:0005515 ... P0AEX9
    Q07820
    39179926
    884907 8t6f:A (1.56) BS03 YI7 N/A GO:0005515 ... P0AEX9
    Q07820
    39179926
    884908 8t6g:A (1.84) BS01 YT2 3.1.3.48 GO:0004725 ... Q06124 37774359
    884909 8t6g:B (1.84) BS01 YT2 3.1.3.48 GO:0004725 ... Q06124 37774359
    884910 8t6h:A (1.981) BS01 ZN N/A GO:0006508 ... O96935 N/A
    884911 8t6h:A (1.981) BS02 MG N/A GO:0006508 ... O96935 N/A
    884912 8t6j:A (3.5) BS01 YKU ? GO:0004930 ... P41594 38632403
    884913 8t6j:B (3.5) BS01 YKU ? GO:0004930 ... P41594 38632403
    884914 8t6l:A (3.3) BS01 LBN ? GO:0001518 ... P15389
    P42212
    38485923
    884915 8t6l:A (3.3) BS02 LBN ? GO:0001518 ... P15389
    P42212
    38485923
    884916 8t6l:A (3.3) BS03 LBN ? GO:0001518 ... P15389
    P42212
    38485923
    884917 8t6l:A (3.3) BS04 LBN ? GO:0001518 ... P15389
    P42212
    38485923
    884918 8t6l:A (3.3) BS05 LBN ? GO:0001518 ... P15389
    P42212
    38485923
    884919 8t6l:A (3.3) BS06 LBN ? GO:0001518 ... P15389
    P42212
    38485923
    884920 8t6l:A (3.3) BS07 LBN ? GO:0001518 ... P15389
    P42212
    38485923
    884921 8t6l:A (3.3) BS08 Y01 ? GO:0001518 ... P15389
    P42212
    38485923
    884922 8t6l:A (3.3) BS09 Y01 ? GO:0001518 ... P15389
    P42212
    38485923
    884923 8t6l:A (3.3) BS10 Y01 ? GO:0001518 ... P15389
    P42212
    38485923
    884924 8t6l:A (3.3) BS11 Y01 ? GO:0001518 ... P15389
    P42212
    38485923
    884925 8t6l:A (3.3) BS12 Y01 ? GO:0001518 ... P15389
    P42212
    38485923
    884926 8t6l:A (3.3) BS13 Y01 ? GO:0001518 ... P15389
    P42212
    38485923
    884927 8t6l:A (3.3) BS14 Y01 ? GO:0001518 ... P15389
    P42212
    38485923
    884928 8t6l:A (3.3) BS15 Y01 ? GO:0001518 ... P15389
    P42212
    38485923
    884929 8t6l:A (3.3) BS16 9Z9 ? GO:0001518 ... P15389
    P42212
    38485923
    884930 8t6l:A (3.3) BS17 9Z9 ? GO:0001518 ... P15389
    P42212
    38485923
    884931 8t6l:A (3.3) BS18 YIJ ? GO:0001518 ... P15389
    P42212
    38485923
    884932 8t6l:A (3.3) BS19 YIJ ? GO:0001518 ... P15389
    P42212
    38485923
    884933 8t6m:E (3.14) BS01 peptide N/A GO:0016020 ... I3QHR3 41289995
    884934 8t6o:A (3.1) BS01 dna 3.1.-.- GO:0003676 ... Q99ZW2 38688943
    884935 8t6o:A (3.1) BS02 rna 3.1.-.- GO:0003676 ... Q99ZW2 38688943
    884936 8t6o:A (3.1) BS03 dna 3.1.-.- GO:0003676 ... Q99ZW2 38688943
    884937 8t6p:A (3.15) BS01 rna 3.1.-.- GO:0003676 ... Q99ZW2 38688943
    884938 8t6p:A (3.15) BS02 dna 3.1.-.- GO:0003676 ... Q99ZW2 38688943
    884939 8t6p:A (3.15) BS03 dna 3.1.-.- GO:0003676 ... Q99ZW2 38688943
    884940 8t6s:A (3.28) BS01 rna 3.1.-.- GO:0003676 ... Q99ZW2 38688943
    884941 8t6s:A (3.28) BS02 dna 3.1.-.- GO:0003676 ... Q99ZW2 38688943
    884942 8t6s:A (3.28) BS03 dna 3.1.-.- GO:0003676 ... Q99ZW2 38688943
    884943 8t6t:A (3.04) BS01 rna 3.1.-.- GO:0003676 ... Q99ZW2 38688943
    884944 8t6t:A (3.04) BS02 dna 3.1.-.- GO:0003676 ... Q99ZW2 38688943
    884945 8t6t:A (3.04) BS03 dna 3.1.-.- GO:0003676 ... Q99ZW2 38688943
    884946 8t6u:A (3.13) BS01 CLR ? GO:0005452 ... P02730 37679563
    884947 8t6u:A (3.13) BS02 H9F ? GO:0005452 ... P02730 37679563
    884948 8t6u:A (3.13) BS03 CLR ? GO:0005452 ... P02730 37679563
    884949 8t6u:B (3.13) BS01 CLR ? GO:0005452 ... P02730 37679563
    884950 8t6u:B (3.13) BS02 H9F ? GO:0005452 ... P02730 37679563
    884951 8t6u:B (3.13) BS03 CLR ? GO:0005452 ... P02730 37679563
    884952 8t6v:A (2.95) BS01 4DS ? GO:0005452 ... P02730 37679563
    884953 8t6v:A (2.95) BS02 Y01 ? GO:0005452 ... P02730 37679563
    884954 8t6v:A (2.95) BS03 CLR ? GO:0005452 ... P02730 37679563
    884955 8t6v:B (2.95) BS01 4DS ? GO:0005452 ... P02730 37679563
    884956 8t6v:B (2.95) BS02 CLR ? GO:0005452 ... P02730 37679563
    884957 8t6x:A (3.08) BS01 rna 3.1.-.- GO:0003676 ... Q99ZW2 38688943
    884958 8t6x:A (3.08) BS02 dna 3.1.-.- GO:0003676 ... Q99ZW2 38688943
    884959 8t6x:A (3.08) BS03 dna 3.1.-.- GO:0003676 ... Q99ZW2 38688943
    884960 8t6x:A (3.08) BS04 MG 3.1.-.- GO:0003676 ... Q99ZW2 38688943
    884961 8t6x:A (3.08) BS05 MG 3.1.-.- GO:0003676 ... Q99ZW2 38688943
    884962 8t6y:A (2.88) BS01 rna 3.1.-.- GO:0003676 ... Q99ZW2 38688943
    884963 8t6y:A (2.88) BS02 dna 3.1.-.- GO:0003676 ... Q99ZW2 38688943
    884964 8t6y:A (2.88) BS03 dna 3.1.-.- GO:0003676 ... Q99ZW2 38688943
    884965 8t6z:A (1.91) BS01 MN 3.1.-.- GO:0003723 ... C3W5S0 38190441
    884966 8t6z:A (1.91) BS02 MN 3.1.-.- GO:0003723 ... C3W5S0 38190441
    884967 8t6z:A (1.91) BS03 IJM 3.1.-.- GO:0003723 ... C3W5S0 38190441
    884968 8t70:A (1.892) BS01 peptide 2.5.1.58
    2.5.1.59
    GO:0004660 ... J9VSJ6 N/A
    884969 8t70:B (1.892) BS01 peptide 2.5.1.58 GO:0003824 ... T2BPA1 N/A
    884970 8t70:B (1.892) BS02 ZN 2.5.1.58 GO:0003824 ... T2BPA1 N/A
    884971 8t70:B (1.892) BS03 3FX 2.5.1.58 GO:0003824 ... T2BPA1 N/A
    884972 8t70:B (1.892) BS04 3FX 2.5.1.58 GO:0003824 ... T2BPA1 N/A
    884973 8t70:B (1.892) BS05 3FX 2.5.1.58 GO:0003824 ... T2BPA1 N/A
    884974 8t70:B (1.892) BS06 FII 2.5.1.58 GO:0003824 ... T2BPA1 N/A
    884975 8t70:B (1.892) BS07 BT6 2.5.1.58 GO:0003824 ... T2BPA1 N/A
    884976 8t71:A (1.8) BS01 GDP 3.6.5.2 GO:0000139 ... P01116 38354232
    884977 8t71:B (1.8) BS01 GDP 3.6.5.2 GO:0000139 ... P01116 38354232
    884978 8t72:A (1.6) BS01 GNP 3.6.5.2 GO:0000139 ... P01116 38354232
    884979 8t72:A (1.6) BS02 MG 3.6.5.2 GO:0000139 ... P01116 38354232
    884980 8t72:B (1.6) BS01 GNP 3.6.5.2 GO:0000139 ... P01116 38354232
    884981 8t72:B (1.6) BS02 MG 3.6.5.2 GO:0000139 ... P01116 38354232
    884982 8t72:C (1.6) BS01 GNP 3.6.5.2 GO:0000139 ... P01116 38354232
    884983 8t73:A (1.5) BS01 GDP 3.6.5.2 GO:0003924 ... P01116 38354232
    884984 8t73:B (1.5) BS01 GDP 3.6.5.2 GO:0003924 ... P01116 38354232
    884985 8t74:A (1.65) BS01 MG 3.6.5.2 GO:0000139 ... P01116 38354232
    884986 8t74:A (1.65) BS02 GNP 3.6.5.2 GO:0000139 ... P01116 38354232
    884987 8t75:A (2.65) BS01 GNP 3.6.5.2 GO:0000139 ... P01116 38354232
    884988 8t75:A (2.65) BS02 MG 3.6.5.2 GO:0000139 ... P01116 38354232
    884989 8t75:B (2.65) BS01 ZN 2.7.11.1 GO:0007165 ... P04049 38354232
    884990 8t75:B (2.65) BS02 ZN 2.7.11.1 GO:0007165 ... P04049 38354232
    884991 8t75:C (2.65) BS01 GNP 3.6.5.2 GO:0000139 ... P01116 38354232
    884992 8t75:C (2.65) BS02 MG 3.6.5.2 GO:0000139 ... P01116 38354232
    884993 8t75:D (2.65) BS01 ZN 2.7.11.1 GO:0007165 ... P04049 38354232
    884994 8t75:D (2.65) BS02 ZN 2.7.11.1 GO:0007165 ... P04049 38354232
    884995 8t75:E (2.65) BS01 GNP 3.6.5.2 GO:0000139 ... P01116 38354232
    884996 8t75:E (2.65) BS02 MG 3.6.5.2 GO:0000139 ... P01116 38354232
    884997 8t75:F (2.65) BS01 ZN 2.7.11.1 GO:0007165 ... P04049 38354232
    884998 8t75:F (2.65) BS02 ZN 2.7.11.1 GO:0007165 ... P04049 38354232
    884999 8t75:G (2.65) BS01 GNP 3.6.5.2 GO:0000139 ... P01116 38354232
    885000 8t75:G (2.65) BS02 MG 3.6.5.2 GO:0000139 ... P01116 38354232

    Reference:
  • Chengxin Zhang, Xi Zhang, Lydia Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).