SEQ2FUN

BioLiP
Download all results in tab-seperated text for 1072681 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
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  • Hover over EC number to view the full name of enzymatic activity.
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    # PDB
    (Resolution Å)
    Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    886601 8tfq:L (1.8) BS01 7V7 N/A N/A N/A 37534714
    886602 8tfu:A (1.482) BS01 peptide ? N/A P03698 38663547
    886603 8tfu:A (1.482) BS02 peptide ? N/A P03698 38663547
    886604 8tfu:B (1.482) BS01 peptide ? N/A P03698 38663547
    886605 8tfu:B (1.482) BS02 peptide ? N/A P03698 38663547
    886606 8tfw:A (1.93) BS01 ZKR N/A GO:0016020 ... Q2FDS6 40447595
    886607 8tfw:A (1.93) BS02 ZKR N/A GO:0016020 ... Q2FDS6 40447595
    886608 8tfw:B (1.93) BS01 ZKR N/A GO:0016020 ... Q2FDS6 40447595
    886609 8tfw:B (1.93) BS02 ZKR N/A GO:0016020 ... Q2FDS6 40447595
    886610 8tfx:A (1.7) BS01 A2P 2.7.1.- GO:0000215 ... O57899 37883434
    886611 8tfy:A (1.54) BS01 NAP 2.7.1.- GO:0000215 ... O57899 37883434
    886612 8tfz:A (2.06) BS01 NAD 2.7.1.- GO:0000215 ... O57899 37883434
    886613 8tfz:B (2.06) BS01 NAD 2.7.1.- GO:0000215 ... O57899 37883434
    886614 8tg2:A (2.4) BS01 UPG N/A GO:0016772 ... D3G6S4 N/A
    886615 8tg3:A (1.47) BS01 HQG 2.7.1.- GO:0003950 ... Q9YFP5 37883434
    886616 8tg4:A (1.37) BS01 rna 2.7.1.- GO:0003950 ... Q9YFP5 37883434
    886617 8tg4:A (1.37) BS02 9SO 2.7.1.- GO:0003950 ... Q9YFP5 37883434
    886618 8tg5:A (2.0) BS01 9S2 2.7.1.- GO:0000215 ... O57899 37883434
    886619 8tg7:A (1.775) BS01 peptide ? N/A P03698 38663547
    886620 8tg7:A (1.775) BS02 peptide ? N/A P03698 38663547
    886621 8tg7:B (1.775) BS01 peptide ? N/A P03698 38663547
    886622 8tg7:B (1.775) BS02 peptide ? N/A P03698 38663547
    886623 8tg8:A (1.576) BS01 peptide ? N/A P03698 38663547
    886624 8tg9:A (3.08) BS01 peptide N/A GO:0016020 ... P16066 39261724
    886625 8tg9:B (3.08) BS01 peptide N/A GO:0016020 ... P16066 39261724
    886626 8tgb:A (1.55) BS01 HEM ? GO:0020037 ... Q84YL2 38041394
    886627 8tgb:B (1.55) BS01 HEM ? GO:0020037 ... Q84YL2 38041394
    886628 8tgc:A (1.484) BS01 peptide ? N/A P03698 38663547
    886629 8tgc:A (1.484) BS02 peptide ? N/A P03698 38663547
    886630 8tgc:B (1.484) BS01 peptide ? N/A P03698 38663547
    886631 8tgc:B (1.484) BS02 peptide ? N/A P03698 38663547
    886632 8tgd:A (2.928) BS01 X3N 2.7.11.1
    2.7.1.137
    2.7.1.153
    GO:0001944 ... P42336 37623743
    886633 8tgd:A (2.928) BS02 ZWE 2.7.11.1
    2.7.1.137
    2.7.1.153
    GO:0001944 ... P42336 37623743
    886634 8tgd:C (2.928) BS01 X3N 2.7.11.1
    2.7.1.137
    2.7.1.153
    GO:0001944 ... P42336 37623743
    886635 8tgd:C (2.928) BS02 ZWE 2.7.11.1
    2.7.1.137
    2.7.1.153
    GO:0001944 ... P42336 37623743
    886636 8tgf:A (1.6) BS01 peptide N/A GO:0000045 ... Q09490 39809444
    886637 8tgg:A (3.6) BS01 WRF ? GO:0005335 ... P54219 38499039
    886638 8tgg:B (3.6) BS01 YHR ? GO:0005335 ... P54219 38499039
    886639 8tgh:A (3.5) BS01 1WE ? GO:0005335 ... P54219 38499039
    886640 8tgh:B (3.5) BS01 YHR ? GO:0005335 ... P54219 38499039
    886641 8tgi:A (3.4) BS01 LDP ? GO:0005335 ... P54219 38499039
    886642 8tgi:B (3.4) BS01 YHR ? GO:0005335 ... P54219 38499039
    886643 8tgj:B (3.5) BS01 YHR ? GO:0005335 ... P54219 38499039
    886644 8tgk:A (3.7) BS01 HSM ? GO:0005335 ... P54219 38499039
    886645 8tgk:B (3.7) BS01 YHR ? GO:0005335 ... P54219 38499039
    886646 8tgl:B (3.4) BS01 YHR ? GO:0005335 ... P54219 38499039
    886647 8tgm:A (3.5) BS01 YHR ? GO:0005335 ... P54219 38499039
    886648 8tgm:B (3.5) BS01 YHR ? GO:0005335 ... P54219 38499039
    886649 8tgn:A (3.3) BS01 SRO ? GO:0005335 ... P54219 38499039
    886650 8tgn:B (3.3) BS01 YHR ? GO:0005335 ... P54219 38499039
    886651 8tgo:C (5.75) BS01 MAN N/A N/A N/A 38582771
    886652 8tgo:C (5.75) BS02 MAN N/A N/A N/A 38582771
    886653 8tgo:D (5.75) BS01 MAN N/A N/A N/A 38582771
    886654 8tgo:D (5.75) BS02 MAN N/A N/A N/A 38582771
    886655 8tgo:L (5.75) BS01 MAN N/A N/A N/A 38582771
    886656 8tgo:O (5.75) BS01 MAN N/A N/A N/A 38582771
    886657 8tgo:P (5.75) BS01 MAN N/A N/A N/A 38582771
    886658 8tgo:P (5.75) BS02 MAN N/A N/A N/A 38582771
    886659 8tgo:b (5.75) BS01 BMA N/A N/A N/A 38582771
    886660 8tgo:b (5.75) BS02 MAN N/A N/A N/A 38582771
    886661 8tgo:c (5.75) BS01 MAN N/A N/A N/A 38582771
    886662 8tgo:c (5.75) BS02 MAN N/A N/A N/A 38582771
    886663 8tgo:f (5.75) BS01 MAN N/A N/A N/A 38582771
    886664 8tgp:A (1.76) BS01 peptide 2.3.1.-
    2.3.1.286
    GO:0017136 ... Q8IXJ6 37966275
    886665 8tgp:A (1.76) BS02 ZN 2.3.1.-
    2.3.1.286
    GO:0017136 ... Q8IXJ6 37966275
    886666 8tgs:A (2.2) BS01 UPG N/A GO:0016772 ... D3G6S4 N/A
    886667 8tgt:C (2.5) BS01 CA N/A N/A P04003 38879009
    886668 8tgw:A (3.6) BS01 BMA N/A GO:0019031 ... B2YXU4 39187497
    886669 8tgy:A (2.18) BS01 9U1 ? GO:0005886 ... A0ACD6B9S6 37645731
    886670 8tgy:C (2.18) BS01 DMU N/A N/A N/A 37645731
    886671 8tgy:D (2.18) BS01 DMU N/A N/A N/A 37645731
    886672 8tgy:E (2.18) BS01 9U1 ? GO:0005886 ... A0ACD6B9S6 37645731
    886673 8th1:A (1.8) BS01 peptide 3.6.4.12
    3.6.4.13
    N/A Q13283 38492217
    886674 8th1:B (1.8) BS01 peptide 3.6.4.12
    3.6.4.13
    N/A Q13283 38492217
    886675 8th1:C (1.8) BS01 peptide 3.6.4.12
    3.6.4.13
    N/A Q13283 38492217
    886676 8th1:D (1.8) BS01 peptide 3.6.4.12
    3.6.4.13
    N/A Q13283 38492217
    886677 8th3:A (3.0) BS01 Y01 ? GO:0004930 ... P0ABE7
    P30556
    38744986
    886678 8th3:A (3.0) BS02 Y01 ? GO:0004930 ... P0ABE7
    P30556
    38744986
    886679 8th4:A (3.3) BS01 LSN ? GO:0004930 ... P0ABE7
    P30556
    38744986
    886680 8th5:A (2.62) BS01 peptide 3.6.4.12
    3.6.4.13
    N/A Q13283 38492217
    886681 8th5:A (2.62) BS02 peptide 3.6.4.12
    3.6.4.13
    N/A Q13283 38492217
    886682 8th5:B (2.62) BS01 peptide 3.6.4.12
    3.6.4.13
    N/A Q13283 38492217
    886683 8th5:C (2.62) BS01 peptide 3.6.4.12
    3.6.4.13
    N/A Q13283 38492217
    886684 8th5:C (2.62) BS02 peptide 3.6.4.12
    3.6.4.13
    N/A Q13283 38492217
    886685 8th5:C (2.62) BS03 peptide 3.6.4.12
    3.6.4.13
    N/A Q13283 38492217
    886686 8th5:D (2.62) BS01 peptide 3.6.4.12
    3.6.4.13
    N/A Q13283 38492217
    886687 8th5:E (2.62) BS01 peptide 3.6.4.12
    3.6.4.13
    N/A Q13283 38492217
    886688 8th5:E (2.62) BS02 peptide 3.6.4.12
    3.6.4.13
    N/A Q13283 38492217
    886689 8th5:F (2.62) BS01 peptide 3.6.4.12
    3.6.4.13
    N/A Q13283 38492217
    886690 8th5:I (2.62) BS01 peptide 3.6.4.12
    3.6.4.13
    N/A Q13283 38492217
    886691 8th6:A (2.34) BS01 peptide 3.6.4.12
    3.6.4.13
    N/A Q13283 38492217
    886692 8th6:B (2.34) BS01 peptide 3.6.4.12
    3.6.4.13
    N/A Q13283 38492217
    886693 8th6:C (2.34) BS01 peptide 3.6.4.12
    3.6.4.13
    N/A Q13283 38492217
    886694 8th6:D (2.34) BS01 peptide 3.6.4.12
    3.6.4.13
    N/A Q13283 38492217
    886695 8th7:A (2.88) BS01 peptide 3.6.4.12
    3.6.4.13
    N/A Q13283 38492217
    886696 8th7:B (2.88) BS01 peptide 3.6.4.12
    3.6.4.13
    N/A Q13283 38492217
    886697 8th9:A (2.08) BS01 dna 4.2.99.18 GO:0003676 ... F7AMK3 37971311
    886698 8th9:A (2.08) BS02 dna 4.2.99.18 GO:0003676 ... F7AMK3 37971311
    886699 8th9:A (2.08) BS03 ZN 4.2.99.18 GO:0003676 ... F7AMK3 37971311
    886700 8thb:A (3.2) BS01 AGS ? GO:0000724 ... Q12050 38427736
    886701 8thb:B (3.2) BS01 AGS ? GO:0000077 ... P40339 38427736
    886702 8thb:B (3.2) BS02 AGS ? GO:0000077 ... P40339 38427736
    886703 8thb:C (3.2) BS01 AGS ? GO:0000077 ... P38629 38427736
    886704 8thb:C (3.2) BS02 MG ? GO:0000077 ... P38629 38427736
    886705 8thb:D (3.2) BS01 AGS ? GO:0000076 ... P40348 38427736
    886706 8thb:D (3.2) BS02 MG ? GO:0000076 ... P40348 38427736
    886707 8thb:E (3.2) BS01 ADP ? GO:0000077 ... P38251 38427736
    886708 8thc:A (3.67) BS01 AGS ? GO:0000724 ... Q12050 38427736
    886709 8thc:B (3.67) BS01 AGS ? GO:0000077 ... P40339 38427736
    886710 8thc:B (3.67) BS02 AGS ? GO:0000077 ... P40339 38427736
    886711 8thc:C (3.67) BS01 AGS ? GO:0000077 ... P38629 38427736
    886712 8thc:D (3.67) BS01 AGS ? GO:0000076 ... P40348 38427736
    886713 8thc:E (3.67) BS01 ADP ? GO:0000077 ... P38251 38427736
    886714 8thd:A (3.25) BS01 AGS ? GO:0000724 ... Q12050 38427736
    886715 8thd:B (3.25) BS01 AGS ? GO:0000077 ... P40339 38427736
    886716 8thd:B (3.25) BS02 AGS ? GO:0000077 ... P40339 38427736
    886717 8thd:B (3.25) BS03 MG ? GO:0000077 ... P40339 38427736
    886718 8thd:C (3.25) BS01 AGS ? GO:0000077 ... P38629 38427736
    886719 8thd:D (3.25) BS01 AGS ? GO:0000076 ... P40348 38427736
    886720 8thd:E (3.25) BS01 ADP ? GO:0000077 ... P38251 38427736
    886721 8the:A (2.5) BS01 HEM ? GO:0009279 ... Q9HV88 38325368
    886722 8the:A (2.5) BS02 CTQ ? GO:0009279 ... Q9HV88 38325368
    886723 8thg:A (2.9) BS01 657 ? GO:0001508 ... Q15858 37782796
    886724 8thg:A (2.9) BS02 Y01 ? GO:0001508 ... Q15858 37782796
    886725 8thg:A (2.9) BS03 Y01 ? GO:0001508 ... Q15858 37782796
    886726 8thg:A (2.9) BS04 LPE ? GO:0001508 ... Q15858 37782796
    886727 8thg:A (2.9) BS05 LPE ? GO:0001508 ... Q15858 37782796
    886728 8thg:A (2.9) BS06 P5S ? GO:0001508 ... Q15858 37782796
    886729 8thg:A (2.9) BS07 LPE ? GO:0001508 ... Q15858 37782796
    886730 8thg:A (2.9) BS08 LPE ? GO:0001508 ... Q15858 37782796
    886731 8thh:A (2.7) BS01 IYJ ? GO:0001508 ... Q15858 37782796
    886732 8thh:A (2.7) BS02 IYJ ? GO:0001508 ... Q15858 37782796
    886733 8thh:A (2.7) BS03 Y01 ? GO:0001508 ... Q15858 37782796
    886734 8thh:A (2.7) BS04 Y01 ? GO:0001508 ... Q15858 37782796
    886735 8thh:A (2.7) BS05 Y01 ? GO:0001508 ... Q15858 37782796
    886736 8thh:A (2.7) BS06 LPE ? GO:0001508 ... Q15858 37782796
    886737 8thh:A (2.7) BS07 LPE ? GO:0001508 ... Q15858 37782796
    886738 8thh:A (2.7) BS08 P5S ? GO:0001508 ... Q15858 37782796
    886739 8thh:A (2.7) BS09 LPE ? GO:0001508 ... Q15858 37782796
    886740 8thh:A (2.7) BS10 LPE ? GO:0001508 ... Q15858 37782796
    886741 8thh:A (2.7) BS11 LPE ? GO:0001508 ... Q15858 37782796
    886742 8thh:A (2.7) BS12 LPE ? GO:0001508 ... Q15858 37782796
    886743 8thh:A (2.7) BS13 Y01 ? GO:0001508 ... Q15858 37782796
    886744 8thk:R (2.6) BS01 CGZ 3.2.1.17 GO:0003796 ... P00720
    P35348
    37563160
    886745 8thl:R (3.1) BS01 ALE 3.2.1.17 GO:0003796 ... P00720
    P35348
    37563160
    886746 8thm:A (2.3) BS01 ZN 4.2.1.1 N/A A0ACD6B9N8 38728392
    886747 8thm:A (2.3) BS02 RUB 4.2.1.1 N/A A0ACD6B9N8 38728392
    886748 8thm:B (2.3) BS01 ZN 4.2.1.1 N/A A0ACD6B9N8 38728392
    886749 8thm:B (2.3) BS02 RUB 4.2.1.1 N/A A0ACD6B9N8 38728392
    886750 8thm:C (2.3) BS01 ZN 4.2.1.1 N/A A0ACD6B9N8 38728392
    886751 8thm:C (2.3) BS02 RUB 4.2.1.1 N/A A0ACD6B9N8 38728392
    886752 8thm:D (2.3) BS01 ZN 4.2.1.1 N/A A0ACD6B9N8 38728392
    886753 8thm:D (2.3) BS02 RUB 4.2.1.1 N/A A0ACD6B9N8 38728392
    886754 8thm:D (2.3) BS03 BCT 4.2.1.1 N/A A0ACD6B9N8 38728392
    886755 8thm:E (2.3) BS01 ZN 4.2.1.1 N/A A0ACD6B9N8 38728392
    886756 8thm:E (2.3) BS02 RUB 4.2.1.1 N/A A0ACD6B9N8 38728392
    886757 8thm:F (2.3) BS01 BCT 4.2.1.1 N/A A0ACD6B9N8 38728392
    886758 8thm:F (2.3) BS02 ZN 4.2.1.1 N/A A0ACD6B9N8 38728392
    886759 8thm:F (2.3) BS03 RUB 4.2.1.1 N/A A0ACD6B9N8 38728392
    886760 8thn:C (2.9) BS01 TBA ? GO:0005249 ... P0A334 38042487
    886761 8tho:A (-1.00) BS01 ZN N/A N/A Q9H165 39423807
    886762 8tho:A (-1.00) BS02 ZN N/A N/A Q9H165 39423807
    886763 8tho:A (-1.00) BS03 ZN N/A N/A Q9H165 39423807
    886764 8thp:A (2.6) BS01 CA ? GO:0000160 ... A5FFU4 39139265
    886765 8thp:A (2.6) BS02 CA ? GO:0000160 ... A5FFU4 39139265
    886766 8thp:B (2.6) BS01 CA ? GO:0000160 ... A5FFU4 39139265
    886767 8thp:B (2.6) BS02 CA ? GO:0000160 ... A5FFU4 39139265
    886768 8thq:A (2.41) BS01 rna N/A GO:0003723 ... Q9UKV8 39373383
    886769 8thq:A (2.41) BS02 rna N/A GO:0003723 ... Q9UKV8 39373383
    886770 8thq:B (2.41) BS01 rna N/A GO:0003723 ... Q9UKV8 39373383
    886771 8thq:B (2.41) BS02 rna N/A GO:0003723 ... Q9UKV8 39373383
    886772 8thr:A (3.12) BS01 EBZ ? GO:0002552 ... Q05940 38517752
    886773 8thu:A (3.1) BS01 dna ? GO:0000786 ... P84233 37595555
    886774 8thu:A (3.1) BS02 dna ? GO:0000786 ... P84233 37595555
    886775 8thu:B (3.1) BS01 dna ? GO:0000786 ... P62799 37595555
    886776 8thu:B (3.1) BS02 dna ? GO:0000786 ... P62799 37595555
    886777 8thu:C (3.1) BS01 dna ? GO:0000786 ... P0C0S5 37595555
    886778 8thu:C (3.1) BS02 dna ? GO:0000786 ... P0C0S5 37595555
    886779 8thu:D (3.1) BS01 dna ? GO:0000786 ... P02281 37595555
    886780 8thu:D (3.1) BS02 dna ? GO:0000786 ... P02281 37595555
    886781 8thu:E (3.1) BS01 dna ? GO:0000786 ... P84233 37595555
    886782 8thu:E (3.1) BS02 dna ? GO:0000786 ... P84233 37595555
    886783 8thu:F (3.1) BS01 dna ? GO:0000786 ... P62799 37595555
    886784 8thu:G (3.1) BS01 dna ? GO:0000786 ... P0C0S5 37595555
    886785 8thu:G (3.1) BS02 dna ? GO:0000786 ... P0C0S5 37595555
    886786 8thu:H (3.1) BS01 dna ? GO:0000786 ... P02281 37595555
    886787 8thu:H (3.1) BS02 dna ? GO:0000786 ... P02281 37595555
    886788 8thx:A (3.98) BS01 ADP N/A GO:0000011 ... P60009 N/A
    886789 8thx:B (3.98) BS01 ADP N/A GO:0000011 ... P60009 N/A
    886790 8thx:C (3.98) BS01 ADP N/A GO:0000011 ... P60009 N/A
    886791 8thx:D (3.98) BS01 ADP N/A GO:0000011 ... P60009 N/A
    886792 8thx:E (3.98) BS01 ADP N/A GO:0000011 ... P60009 N/A
    886793 8thy:A (3.84) BS01 ADP N/A GO:0000011 ... P60009 N/A
    886794 8thy:A (3.84) BS02 MG N/A GO:0000011 ... P60009 N/A
    886795 8thy:B (3.84) BS01 ADP N/A GO:0000011 ... P60009 N/A
    886796 8thy:B (3.84) BS02 MG N/A GO:0000011 ... P60009 N/A
    886797 8thy:C (3.84) BS01 ADP N/A GO:0000011 ... P60009 N/A
    886798 8thy:C (3.84) BS02 MG N/A GO:0000011 ... P60009 N/A
    886799 8thy:D (3.84) BS01 ADP N/A GO:0000011 ... P60009 N/A
    886800 8thy:D (3.84) BS02 MG N/A GO:0000011 ... P60009 N/A

    Reference:
  • Chengxin Zhang, Xi Zhang, Lydia Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).