SEQ2FUN

BioLiP
Download all results in tab-seperated text for 942758 receptor-ligand interactions, whose format is explained at readme.txt.
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  • Hover over EC number to view the full name of enzymatic activity.
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    # PDB
    (Resolution Å)
    Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    887001 8umy:D (2.83) BS03 MG ? GO:0003677 ... P35249 38669181
    887002 8umy:D (2.83) BS04 AGS ? GO:0003677 ... P35249 38669181
    887003 8umy:E (2.83) BS01 dna ? GO:0000731 ... P40938 38669181
    887004 8umy:E (2.83) BS02 AGS ? GO:0000731 ... P40938 38669181
    887005 8umy:E (2.83) BS03 ADP ? GO:0000731 ... P40938 38669181
    887006 8umz:A (1.63) BS01 CA N/A N/A Q99PJ1 N/A
    887007 8umz:A (1.63) BS02 CA N/A N/A Q99PJ1 N/A
    887008 8umz:A (1.63) BS03 CA N/A N/A Q99PJ1 N/A
    887009 8umz:A (1.63) BS04 CA N/A N/A Q99PJ1 N/A
    887010 8umz:A (1.63) BS05 CA N/A N/A Q99PJ1 N/A
    887011 8umz:B (1.63) BS01 CA N/A N/A Q99PJ1 N/A
    887012 8umz:B (1.63) BS02 CA N/A N/A Q99PJ1 N/A
    887013 8umz:B (1.63) BS03 CA N/A N/A Q99PJ1 N/A
    887014 8umz:B (1.63) BS04 CA N/A N/A Q99PJ1 N/A
    887015 8umz:B (1.63) BS05 CA N/A N/A Q99PJ1 N/A
    887016 8un0:A (3.0) BS01 dna ? GO:0003677 ... Q8WVB6 38669181
    887017 8un0:A (3.0) BS02 dna ? GO:0003677 ... Q8WVB6 38669181
    887018 8un0:A (3.0) BS03 AGS ? GO:0003677 ... Q8WVB6 38669181
    887019 8un0:B (3.0) BS01 dna ? GO:0003677 ... P35250 38669181
    887020 8un0:B (3.0) BS02 dna ? GO:0003677 ... P35250 38669181
    887021 8un0:B (3.0) BS03 AGS ? GO:0003677 ... P35250 38669181
    887022 8un0:B (3.0) BS04 AGS ? GO:0003677 ... P35250 38669181
    887023 8un0:C (3.0) BS01 dna ? GO:0003677 ... P40937 38669181
    887024 8un0:C (3.0) BS02 AGS ? GO:0003677 ... P40937 38669181
    887025 8un0:C (3.0) BS03 AGS ? GO:0003677 ... P40937 38669181
    887026 8un0:D (3.0) BS01 dna ? GO:0003677 ... P35249 38669181
    887027 8un0:D (3.0) BS02 AGS ? GO:0003677 ... P35249 38669181
    887028 8un0:D (3.0) BS03 MG ? GO:0003677 ... P35249 38669181
    887029 8un0:D (3.0) BS04 AGS ? GO:0003677 ... P35249 38669181
    887030 8un0:E (3.0) BS01 dna ? GO:0000731 ... P40938 38669181
    887031 8un0:E (3.0) BS02 AGS ? GO:0000731 ... P40938 38669181
    887032 8un0:E (3.0) BS03 ADP ? GO:0000731 ... P40938 38669181
    887033 8un3:A (2.07) BS01 XOI 3.6.5.2 GO:0003924 ... P01116 38229748
    887034 8un3:A (2.07) BS02 GDP 3.6.5.2 GO:0003924 ... P01116 38229748
    887035 8un3:B (2.07) BS01 XOI 3.6.5.2 GO:0003924 ... P01116 38229748
    887036 8un3:B (2.07) BS02 GDP 3.6.5.2 GO:0003924 ... P01116 38229748
    887037 8un3:B (2.07) BS03 MG 3.6.5.2 GO:0003924 ... P01116 38229748
    887038 8un3:B (2.07) BS04 MG 3.6.5.2 GO:0003924 ... P01116 38229748
    887039 8un3:C (2.07) BS01 XOI 3.6.5.2 GO:0003924 ... P01116 38229748
    887040 8un3:C (2.07) BS02 GDP 3.6.5.2 GO:0003924 ... P01116 38229748
    887041 8un3:D (2.07) BS01 XOI 3.6.5.2 GO:0003924 ... P01116 38229748
    887042 8un3:D (2.07) BS02 GDP 3.6.5.2 GO:0003924 ... P01116 38229748
    887043 8un3:D (2.07) BS03 MG 3.6.5.2 GO:0003924 ... P01116 38229748
    887044 8un4:A (1.57) BS01 GDP 3.6.5.2 GO:0003924 ... P01116 38229748
    887045 8un4:A (1.57) BS02 XV3 3.6.5.2 GO:0003924 ... P01116 38229748
    887046 8un5:A (1.31) BS01 GDP 3.6.5.2 GO:0003924 ... P01116 38229748
    887047 8un5:A (1.31) BS02 XQ6 3.6.5.2 GO:0003924 ... P01116 38229748
    887048 8un5:B (1.31) BS01 GDP 3.6.5.2 GO:0003924 ... P01116 38229748
    887049 8un5:B (1.31) BS02 XQ6 3.6.5.2 GO:0003924 ... P01116 38229748
    887050 8un7:A (3.55) BS01 CA ? N/A P55083 38740766
    887051 8un7:B (3.55) BS01 CA ? N/A P55083 38740766
    887052 8un7:C (3.55) BS01 CA ? N/A P55083 38740766
    887053 8un7:D (3.55) BS01 CA ? N/A P55083 38740766
    887054 8un7:E (3.55) BS01 CA ? N/A P55083 38740766
    887055 8un7:F (3.55) BS01 CA ? N/A P55083 38740766
    887056 8un7:G (3.55) BS01 CA ? N/A P55083 38740766
    887057 8un7:H (3.55) BS01 CA ? N/A P55083 38740766
    887058 8un9:A (2.103) BS01 MG ? GO:0003676 ... P50837 38661211
    887059 8un9:B (2.103) BS01 MG ? GO:0003676 ... P50837 38661211
    887060 8und:A (1.9) BS01 X4N N/A N/A A0A6C1F1G5 N/A
    887061 8unf:A (3.15) BS01 dna ? GO:0003677 ... P04527 38177685
    887062 8unf:B (3.15) BS01 dna 3.6.4.- GO:0003677 ... P04526 38177685
    887063 8unf:B (3.15) BS02 08T 3.6.4.- GO:0003677 ... P04526 38177685
    887064 8unf:B (3.15) BS03 MG 3.6.4.- GO:0003677 ... P04526 38177685
    887065 8unf:C (3.15) BS01 dna 3.6.4.- GO:0003677 ... P04526 38177685
    887066 8unf:C (3.15) BS02 08T 3.6.4.- GO:0003677 ... P04526 38177685
    887067 8unf:C (3.15) BS03 MG 3.6.4.- GO:0003677 ... P04526 38177685
    887068 8unf:D (3.15) BS01 dna 3.6.4.- GO:0003677 ... P04526 38177685
    887069 8unf:D (3.15) BS02 08T 3.6.4.- GO:0003677 ... P04526 38177685
    887070 8unf:D (3.15) BS03 MG 3.6.4.- GO:0003677 ... P04526 38177685
    887071 8unf:E (3.15) BS01 dna 3.6.4.- GO:0003677 ... P04526 38177685
    887072 8unf:E (3.15) BS02 ADP 3.6.4.- GO:0003677 ... P04526 38177685
    887073 8unh:B (3.21) BS01 AGS 3.6.4.- GO:0003677 ... P04526 38177685
    887074 8unh:B (3.21) BS02 MG 3.6.4.- GO:0003677 ... P04526 38177685
    887075 8unh:E (3.21) BS01 AGS 3.6.4.- GO:0003677 ... P04526 38177685
    887076 8uni:A (3.4) BS01 peptide N/A N/A O60341 N/A
    887077 8uni:A (3.4) BS02 HUF N/A N/A O60341 N/A
    887078 8unj:B (3.35) BS01 MG ? GO:0003677 ... P35250 38669181
    887079 8unj:B (3.35) BS02 AGS ? GO:0003677 ... P35250 38669181
    887080 8unj:C (3.35) BS01 AGS ? GO:0003677 ... P40937 38669181
    887081 8unj:D (3.35) BS01 AGS ? GO:0003677 ... P35249 38669181
    887082 8unj:E (3.35) BS01 ADP ? GO:0000731 ... P40938 38669181
    887083 8unl:A (3.3) BS01 GTP ? GO:0002862 ... P63092 38480881
    887084 8unl:R (3.3) BS01 G1I ? GO:0004930 ... P07550 38480881
    887085 8unm:A (3.4) BS01 GTP ? GO:0002862 ... P63092 38480881
    887086 8unm:R (3.4) BS01 G1I ? GO:0004930 ... P07550 38480881
    887087 8unn:A (3.4) BS01 GTP ? GO:0002862 ... P63092 38480881
    887088 8unn:R (3.4) BS01 G1I ? GO:0004930 ... P07550 38480881
    887089 8uno:A (3.3) BS01 GTP ? GO:0002862 ... P63092 38480881
    887090 8uno:R (3.3) BS01 G1I ? GO:0004930 ... P07550 38480881
    887091 8unp:A (3.3) BS01 GTP ? GO:0002862 ... P63092 38480881
    887092 8unp:R (3.3) BS01 G1I ? GO:0004930 ... P07550 38480881
    887093 8unq:A (3.3) BS01 GTP ? GO:0002862 ... P63092 38480881
    887094 8unq:R (3.3) BS01 G1I ? GO:0004930 ... P07550 38480881
    887095 8unr:A (3.4) BS01 GTP ? GO:0002862 ... P63092 38480881
    887096 8unr:R (3.4) BS01 G1I ? GO:0004930 ... P07550 38480881
    887097 8uns:A (3.4) BS01 GTP ? GO:0002862 ... P63092 38480881
    887098 8uns:R (3.4) BS01 G1I ? GO:0004930 ... P07550 38480881
    887099 8unt:A (3.4) BS01 GTP ? GO:0002862 ... P63092 38480881
    887100 8unt:R (3.4) BS01 G1I ? GO:0004930 ... P07550 38480881
    887101 8unu:A (3.5) BS01 GTP ? GO:0002862 ... P63092 38480881
    887102 8unu:R (3.5) BS01 G1I ? GO:0004930 ... P07550 38480881
    887103 8unv:A (3.3) BS01 GTP ? GO:0002862 ... P63092 38480881
    887104 8unv:R (3.3) BS01 G1I ? GO:0004930 ... P07550 38480881
    887105 8unw:A (3.4) BS01 GTP ? GO:0002862 ... P63092 38480881
    887106 8unw:R (3.4) BS01 G1I ? GO:0004930 ... P07550 38480881
    887107 8unx:A (3.6) BS01 GTP ? GO:0002862 ... P63092 38480881
    887108 8unx:R (3.6) BS01 G1I ? GO:0004930 ... P07550 38480881
    887109 8uny:A (3.6) BS01 GTP ? GO:0002862 ... P63092 38480881
    887110 8uny:R (3.6) BS01 G1I ? GO:0004930 ... P07550 38480881
    887111 8unz:A (3.8) BS01 GTP ? GO:0002862 ... P63092 38480881
    887112 8unz:R (3.8) BS01 G1I ? GO:0004930 ... P07550 38480881
    887113 8uo0:A (3.5) BS01 GTP ? GO:0002862 ... P63092 38480881
    887114 8uo0:R (3.5) BS01 G1I ? GO:0004930 ... P07550 38480881
    887115 8uo1:A (3.6) BS01 GTP ? GO:0002862 ... P63092 38480881
    887116 8uo1:R (3.6) BS01 G1I ? GO:0001540 ... P07550 38480881
    887117 8uo2:A (3.6) BS01 GTP ? GO:0002862 ... P63092 38480881
    887118 8uo2:R (3.6) BS01 G1I ? GO:0004930 ... P07550 38480881
    887119 8uo3:A (3.5) BS01 GTP ? GO:0002862 ... P63092 38480881
    887120 8uo3:A (3.5) BS02 MG ? GO:0002862 ... P63092 38480881
    887121 8uo3:R (3.5) BS01 G1I ? GO:0004930 ... P07550 38480881
    887122 8uo4:A (4.0) BS01 GTP ? GO:0002862 ... P63092 38480881
    887123 8uo7:A (2.2) BS01 peptide 3.4.21.4 GO:0004175 ... P00760 38306609
    887124 8uo7:A (2.2) BS02 CA 3.4.21.4 GO:0004175 ... P00760 38306609
    887125 8uo8:A (3.2) BS01 X3U ? GO:0001669 ... Q7L1I2 38898101
    887126 8uo8:A (3.2) BS02 PS1 ? GO:0001669 ... Q7L1I2 38898101
    887127 8uo8:A (3.2) BS03 9Z9 ? GO:0001669 ... Q7L1I2 38898101
    887128 8uo8:A (3.2) BS04 9Z9 ? GO:0001669 ... Q7L1I2 38898101
    887129 8uo8:A (3.2) BS05 43Y ? GO:0001669 ... Q7L1I2 38898101
    887130 8uo8:A (3.2) BS06 Y01 ? GO:0001669 ... Q7L1I2 38898101
    887131 8uo9:A (3.3) BS01 X49 ? GO:0005783 ... Q7L0J3 38898101
    887132 8uo9:A (3.3) BS02 Y01 ? GO:0005783 ... Q7L0J3 38898101
    887133 8uo9:A (3.3) BS03 PS1 ? GO:0005783 ... Q7L0J3 38898101
    887134 8uob:A (2.52) BS01 XB5 2.1.1.56
    2.1.1.57
    2.7.7.48
    2.7.7.50
    3.1.13.-
    3.4.19.12
    3.4.22.-
    3.4.22.69
    3.6.4.12
    3.6.4.13
    4.6.1.-
    GO:0006508 ... P0DTD1 38547259
    887135 8uob:A (2.52) BS02 ZN 2.1.1.56
    2.1.1.57
    2.7.7.48
    2.7.7.50
    3.1.13.-
    3.4.19.12
    3.4.22.-
    3.4.22.69
    3.6.4.12
    3.6.4.13
    4.6.1.-
    GO:0006508 ... P0DTD1 38547259
    887136 8uob:A (2.52) BS03 ZN 2.1.1.56
    2.1.1.57
    2.7.7.48
    2.7.7.50
    3.1.13.-
    3.4.19.12
    3.4.22.-
    3.4.22.69
    3.6.4.12
    3.6.4.13
    4.6.1.-
    GO:0006508 ... P0DTD1 38547259
    887137 8uob:A (2.52) BS04 ZN 2.1.1.56
    2.1.1.57
    2.7.7.48
    2.7.7.50
    3.1.13.-
    3.4.19.12
    3.4.22.-
    3.4.22.69
    3.6.4.12
    3.6.4.13
    4.6.1.-
    GO:0006508 ... P0DTD1 38547259
    887138 8uoh:B (2.15) BS01 X4W N/A N/A P27448 N/A
    887139 8uoi:A (1.8) BS01 X3Q N/A N/A P27448 N/A
    887140 8uoj:A (1.6) BS01 X5I N/A N/A P27448 39588908
    887141 8uok:A (1.85) BS01 X5N N/A N/A P27448 39588908
    887142 8uok:B (1.85) BS01 X5N N/A N/A P27448 39588908
    887143 8uol:A (1.9) BS01 X4H N/A N/A P27448 N/A
    887144 8uol:B (1.9) BS01 X4H N/A N/A P27448 N/A
    887145 8uom:A (3.2) BS01 peptide N/A N/A O60341 N/A
    887146 8uom:A (3.2) BS02 HUF N/A N/A O60341 N/A
    887147 8uoq:0 (3.8) BS01 SF4 N/A GO:0000019 ... P06839 39287137
    887148 8uoq:4 (3.8) BS01 ZN N/A GO:0000112 ... Q12004 39287137
    887149 8uoq:6 (3.8) BS01 ZN N/A GO:0000112 ... Q04673 39287137
    887150 8uoq:6 (3.8) BS02 ZN N/A GO:0000112 ... Q04673 39287137
    887151 8uoq:6 (3.8) BS03 ZN N/A GO:0000112 ... Q04673 39287137
    887152 8uoq:6 (3.8) BS04 ZN N/A GO:0000112 ... Q04673 39287137
    887153 8uoq:7 (3.8) BS01 dna N/A GO:0000019 ... Q00578 39287137
    887154 8uoq:7 (3.8) BS02 dna N/A GO:0000019 ... Q00578 39287137
    887155 8uoq:7 (3.8) BS03 MG N/A GO:0000019 ... Q00578 39287137
    887156 8uoq:A (3.8) BS01 dna N/A GO:0000428 ... P04050 39287137
    887157 8uoq:A (3.8) BS02 ZN N/A GO:0000428 ... P04050 39287137
    887158 8uoq:A (3.8) BS03 ZN N/A GO:0000428 ... P04050 39287137
    887159 8uoq:A (3.8) BS04 MG N/A GO:0000428 ... P04050 39287137
    887160 8uoq:B (3.8) BS01 ZN N/A GO:0000428 ... P08518 39287137
    887161 8uoq:C (3.8) BS01 ZN N/A GO:0000428 ... P16370 39287137
    887162 8uoq:I (3.8) BS01 ZN N/A GO:0000428 ... P27999 39287137
    887163 8uoq:I (3.8) BS02 ZN N/A GO:0000428 ... P27999 39287137
    887164 8uoq:J (3.8) BS01 ZN N/A GO:0000428 ... P22139 39287137
    887165 8uoq:L (3.8) BS01 ZN N/A GO:0000428 ... P40422 39287137
    887166 8uoq:M (3.8) BS01 dna N/A GO:0000993 ... P29055 39287137
    887167 8uoq:M (3.8) BS02 dna N/A GO:0000993 ... P29055 39287137
    887168 8uoq:M (3.8) BS03 ZN N/A GO:0000993 ... P29055 39287137
    887169 8uoq:O (3.8) BS01 dna N/A GO:0000126 ... P13393 39287137
    887170 8uoq:O (3.8) BS02 dna N/A GO:0000126 ... P13393 39287137
    887171 8uoq:S (3.8) BS01 ZN N/A GO:0000977 ... P07273 39287137
    887172 8uot:0 (3.7) BS01 SF4 N/A GO:0000019 ... P06839 39287137
    887173 8uot:4 (3.7) BS01 ZN N/A GO:0000112 ... Q12004 39287137
    887174 8uot:6 (3.7) BS01 ZN N/A GO:0000112 ... Q04673 39287137
    887175 8uot:6 (3.7) BS02 ZN N/A GO:0000112 ... Q04673 39287137
    887176 8uot:6 (3.7) BS03 ZN N/A GO:0000112 ... Q04673 39287137
    887177 8uot:6 (3.7) BS04 ZN N/A GO:0000112 ... Q04673 39287137
    887178 8uot:7 (3.7) BS01 dna N/A GO:0000019 ... Q00578 39287137
    887179 8uot:7 (3.7) BS02 dna N/A GO:0000019 ... Q00578 39287137
    887180 8uot:7 (3.7) BS03 MG N/A GO:0000019 ... Q00578 39287137
    887181 8uot:A (3.7) BS01 ZN N/A GO:0000428 ... P04050 39287137
    887182 8uot:A (3.7) BS02 ZN N/A GO:0000428 ... P04050 39287137
    887183 8uot:A (3.7) BS03 MG N/A GO:0000428 ... P04050 39287137
    887184 8uot:B (3.7) BS01 ZN N/A GO:0000428 ... P08518 39287137
    887185 8uot:C (3.7) BS01 ZN N/A GO:0000428 ... P16370 39287137
    887186 8uot:I (3.7) BS01 ZN N/A GO:0000428 ... P27999 39287137
    887187 8uot:I (3.7) BS02 ZN N/A GO:0000428 ... P27999 39287137
    887188 8uot:J (3.7) BS01 ZN N/A GO:0000428 ... P22139 39287137
    887189 8uot:M (3.7) BS01 dna N/A GO:0000993 ... P29055 39287137
    887190 8uot:M (3.7) BS02 ZN N/A GO:0000993 ... P29055 39287137
    887191 8uot:O (3.7) BS01 dna N/A GO:0000126 ... P13393 39287137
    887192 8uot:O (3.7) BS02 dna N/A GO:0000126 ... P13393 39287137
    887193 8uot:S (3.7) BS01 ZN N/A GO:0000977 ... P07273 39287137
    887194 8uou:A (1.35) BS01 ASP 3.5.1.1 GO:0004067 ... Q2RMX1 38501449
    887195 8uou:B (1.35) BS01 ASP 3.5.1.1 GO:0004067 ... Q2RMX1 38501449
    887196 8uoz:A (-1.00) BS01 P4P ? GO:0005886 ... P23895 38806470
    887197 8uoz:B (-1.00) BS01 P4P ? GO:0005886 ... P23895 38806470
    887198 8up3:E (1.76) BS01 ASP 3.5.1.1 GO:0004067 ... Q2RMX1 38501449
    887199 8up3:F (1.76) BS01 ASP 3.5.1.1 GO:0004067 ... Q2RMX1 38501449
    887200 8up4:A (1.51) BS01 FAD N/A GO:0004497 ... B5M9L6 N/A

    Reference:
  • Chengxin Zhang, Xi Zhang, Lydia Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).