SEQ2FUN

BioLiP
Download all results in tab-seperated text for 942758 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
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  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
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    # PDB
    (Resolution Å)
    Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    887401 8upr:AE (5.3) BS05 ZN 2.7.7.6 GO:0000287 ... P0A8T7 39117885
    887402 8upr:AE (5.3) BS06 ZN 2.7.7.6 GO:0000287 ... P0A8T7 39117885
    887403 8upr:AF (5.3) BS01 rna 2.7.7.6 GO:0000345 ... P0A800 39117885
    887404 8upr:C (5.3) BS01 rna ? GO:0002181 ... P0A7T7 39117885
    887405 8upr:E (5.3) BS01 rna ? GO:0000028 ... P0A7U7 39117885
    887406 8upr:F (5.3) BS01 rna ? GO:0000028 ... P68679 39117885
    887407 8upr:G (5.3) BS01 rna ? GO:0000028 ... P0A7V0 39117885
    887408 8upr:I (5.3) BS01 rna ? GO:0000028 ... P0A7V3 39117885
    887409 8upr:I (5.3) BS02 rna ? GO:0000028 ... P0A7V3 39117885
    887410 8upr:J (5.3) BS01 rna ? GO:0000028 ... P0A7V8 39117885
    887411 8upr:K (5.3) BS01 rna ? GO:0000028 ... P0A7W1 39117885
    887412 8upr:K (5.3) BS02 rna ? GO:0000028 ... P0A7W1 39117885
    887413 8upr:L (5.3) BS01 rna ? GO:0002181 ... P02358 39117885
    887414 8upr:M (5.3) BS01 rna ? GO:0000028 ... P02359 39117885
    887415 8upr:M (5.3) BS02 rna ? GO:0000028 ... P02359 39117885
    887416 8upr:N (5.3) BS01 rna N/A GO:0000028 ... P0A7W7 39117885
    887417 8upr:O (5.3) BS01 rna N/A GO:0000049 ... P0A7X3 39117885
    887418 8upr:P (5.3) BS01 rna N/A GO:0000049 ... P0A7R5 39117885
    887419 8upr:Q (5.3) BS01 rna ? GO:0002181 ... P0A7R9 39117885
    887420 8upr:R (5.3) BS01 rna ? GO:0000049 ... P0A7S3 39117885
    887421 8upr:S (5.3) BS01 rna N/A GO:0000028 ... P0AG59 39117885
    887422 8upr:T (5.3) BS01 rna N/A GO:0000028 ... P0ADZ4 39117885
    887423 8upr:T (5.3) BS02 rna N/A GO:0000028 ... P0ADZ4 39117885
    887424 8upr:U (5.3) BS01 rna ? GO:0000028 ... P0A7T3 39117885
    887425 8upr:V (5.3) BS01 rna N/A GO:0000028 ... P0AG63 39117885
    887426 8upr:W (5.3) BS01 rna N/A GO:0000028 ... P0A7U3 39117885
    887427 8upr:X (5.3) BS01 rna ? GO:0000049 ... P0A7S9 39117885
    887428 8upr:X (5.3) BS02 rna ? GO:0000049 ... P0A7S9 39117885
    887429 8upr:Y (5.3) BS01 rna ? GO:0000027 ... P0A7J7 39117885
    887430 8upr:b (5.3) BS01 rna ? GO:0000027 ... P0A7L8 39117885
    887431 8upr:b (5.3) BS02 rna ? GO:0000027 ... P0A7L8 39117885
    887432 8upr:c (5.3) BS01 rna ? GO:0003735 ... A0A1X3JA73 39117885
    887433 8upr:e (5.3) BS01 rna N/A GO:0003735 ... N/A 39117885
    887434 8upr:f (5.3) BS01 rna N/A GO:0003735 ... N/A 39117885
    887435 8upr:f (5.3) BS02 rna N/A GO:0003735 ... N/A 39117885
    887436 8upr:g (5.3) BS01 rna ? GO:0002181 ... P0A7M9 39117885
    887437 8upr:h (5.3) BS01 rna ? GO:0000027 ... P60422 39117885
    887438 8upr:i (5.3) BS01 rna N/A GO:0003735 ... N/A 39117885
    887439 8upr:j (5.3) BS01 rna ? GO:0000027 ... P60438 39117885
    887440 8upr:k (5.3) BS01 rna N/A GO:0003735 ... N/A 39117885
    887441 8upr:l (5.3) BS01 rna ? GO:0003735 ... A1AGK6 39117885
    887442 8upr:m (5.3) BS01 rna ? GO:0003735 ... B7MGC4 39117885
    887443 8upr:n (5.3) BS01 rna N/A GO:0003735 ... N/A 39117885
    887444 8upr:n (5.3) BS02 rna N/A GO:0003735 ... N/A 39117885
    887445 8upr:n (5.3) BS03 rna N/A GO:0003735 ... N/A 39117885
    887446 8upr:o (5.3) BS01 rna ? GO:0002181 ... P0A7Q1 39117885
    887447 8upr:p (5.3) BS01 rna ? GO:0002181 ... C3SR17 39117885
    887448 8upr:q (5.3) BS01 rna ? GO:0003735 ... A0A0E2L017 39117885
    887449 8upr:r (5.3) BS01 rna N/A GO:0003735 ... N/A 39117885
    887450 8upr:s (5.3) BS01 rna N/A GO:0003735 ... N/A 39117885
    887451 8upr:t (5.3) BS01 rna ? GO:0003735 ... S1NW45 39117885
    887452 8upr:t (5.3) BS02 rna ? GO:0003735 ... S1NW45 39117885
    887453 8upr:u (5.3) BS01 rna ? GO:0003735 ... A0A037Y8L6 39117885
    887454 8upr:v (5.3) BS01 rna ? GO:0000027 ... P0ADY7 39117885
    887455 8upr:v (5.3) BS02 rna ? GO:0000027 ... P0ADY7 39117885
    887456 8upr:w (5.3) BS01 rna N/A GO:0003735 ... N/A 39117885
    887457 8upr:x (5.3) BS01 rna N/A GO:0003735 ... N/A 39117885
    887458 8upr:x (5.3) BS02 rna N/A GO:0003735 ... N/A 39117885
    887459 8upr:y (5.3) BS01 rna N/A GO:0003735 ... N/A 39117885
    887460 8upr:z (5.3) BS01 rna ? GO:0000027 ... B7MAS6 39117885
    887461 8ups:A (2.44) BS01 I70 2.1.1.56
    2.1.1.57
    2.7.7.48
    2.7.7.50
    3.1.13.-
    3.4.19.12
    3.4.22.-
    3.4.22.69
    3.6.4.12
    3.6.4.13
    4.6.1.-
    GO:0008233 ... P0DTD1 38365209
    887462 8upv:A (1.57) BS01 X83 2.1.1.56
    2.1.1.57
    2.7.7.48
    2.7.7.50
    3.1.13.-
    3.4.19.12
    3.4.22.-
    3.4.22.69
    3.6.4.12
    3.6.4.13
    4.6.1.-
    GO:0008233 ... P0DTD1 38365209
    887463 8upw:A (1.44) BS01 X8F 2.1.1.56
    2.1.1.57
    2.7.7.48
    2.7.7.50
    3.1.13.-
    3.4.19.12
    3.4.22.-
    3.4.22.69
    3.6.4.12
    3.6.4.13
    4.6.1.-
    GO:0008233 ... P0DTD1 38365209
    887464 8upz:A (1.38) BS01 FAD N/A N/A F7X6I3 39437336
    887465 8upz:A (1.38) BS02 X79 N/A N/A F7X6I3 39437336
    887466 8upz:B (1.38) BS01 FAD N/A N/A F7X6I3 39437336
    887467 8upz:B (1.38) BS02 X79 N/A N/A F7X6I3 39437336
    887468 8uq0:A (1.43) BS01 FAD N/A N/A F7X6I3 39437336
    887469 8uq0:A (1.43) BS02 X7K N/A N/A F7X6I3 39437336
    887470 8uq0:B (1.43) BS01 FAD N/A N/A F7X6I3 39437336
    887471 8uq0:B (1.43) BS02 X7K N/A N/A F7X6I3 39437336
    887472 8uq1:A (1.41) BS01 FAD N/A N/A F7X6I3 39437336
    887473 8uq1:A (1.41) BS02 X7Q N/A N/A F7X6I3 39437336
    887474 8uq1:B (1.41) BS01 FAD N/A N/A F7X6I3 39437336
    887475 8uq1:B (1.41) BS02 X7Q N/A N/A F7X6I3 39437336
    887476 8uq2:A (2.98) BS01 ZN ? GO:0001666 ... Q92736 39278969
    887477 8uq2:A (2.98) BS02 ATP ? GO:0001666 ... Q92736 39278969
    887478 8uq2:A (2.98) BS03 ATP ? GO:0001666 ... Q92736 39278969
    887479 8uq2:B (2.98) BS01 ZN ? GO:0001666 ... Q92736 39278969
    887480 8uq2:B (2.98) BS02 ATP ? GO:0001666 ... Q92736 39278969
    887481 8uq2:B (2.98) BS03 ATP ? GO:0001666 ... Q92736 39278969
    887482 8uq2:C (2.98) BS01 ZN ? GO:0001666 ... Q92736 39278969
    887483 8uq2:C (2.98) BS02 ATP ? GO:0001666 ... Q92736 39278969
    887484 8uq2:C (2.98) BS03 ATP ? GO:0001666 ... Q92736 39278969
    887485 8uq2:D (2.98) BS01 ZN ? GO:0001666 ... Q92736 39278969
    887486 8uq2:D (2.98) BS02 ATP ? GO:0001666 ... Q92736 39278969
    887487 8uq2:D (2.98) BS03 ATP ? GO:0001666 ... Q92736 39278969
    887488 8uq3:A (3.18) BS01 ZN ? GO:0001666 ... Q92736 39278969
    887489 8uq3:A (3.18) BS02 ATP ? GO:0001666 ... Q92736 39278969
    887490 8uq3:A (3.18) BS03 ATP ? GO:0001666 ... Q92736 39278969
    887491 8uq3:A (3.18) BS04 KVR ? GO:0001666 ... Q92736 39278969
    887492 8uq3:B (3.18) BS01 ZN ? GO:0001666 ... Q92736 39278969
    887493 8uq3:B (3.18) BS02 ATP ? GO:0001666 ... Q92736 39278969
    887494 8uq3:B (3.18) BS03 ATP ? GO:0001666 ... Q92736 39278969
    887495 8uq3:B (3.18) BS04 KVR ? GO:0001666 ... Q92736 39278969
    887496 8uq3:C (3.18) BS01 ZN ? GO:0001666 ... Q92736 39278969
    887497 8uq3:C (3.18) BS02 ATP ? GO:0001666 ... Q92736 39278969
    887498 8uq3:C (3.18) BS03 ATP ? GO:0001666 ... Q92736 39278969
    887499 8uq3:C (3.18) BS04 KVR ? GO:0001666 ... Q92736 39278969
    887500 8uq3:D (3.18) BS01 ZN ? GO:0001666 ... Q92736 39278969
    887501 8uq3:D (3.18) BS02 ATP ? GO:0001666 ... Q92736 39278969
    887502 8uq3:D (3.18) BS03 ATP ? GO:0001666 ... Q92736 39278969
    887503 8uq3:D (3.18) BS04 KVR ? GO:0001666 ... Q92736 39278969
    887504 8uq4:A (3.64) BS01 ZN ? GO:0001666 ... Q92736 39278969
    887505 8uq4:A (3.64) BS02 ATP ? GO:0001666 ... Q92736 39278969
    887506 8uq4:A (3.64) BS03 ATP ? GO:0001666 ... Q92736 39278969
    887507 8uq4:B (3.64) BS01 ZN ? GO:0001666 ... Q92736 39278969
    887508 8uq4:B (3.64) BS02 ATP ? GO:0001666 ... Q92736 39278969
    887509 8uq4:B (3.64) BS03 ATP ? GO:0001666 ... Q92736 39278969
    887510 8uq4:C (3.64) BS01 ZN ? GO:0001666 ... Q92736 39278969
    887511 8uq4:C (3.64) BS02 ATP ? GO:0001666 ... Q92736 39278969
    887512 8uq4:C (3.64) BS03 ATP ? GO:0001666 ... Q92736 39278969
    887513 8uq4:D (3.64) BS01 ZN ? GO:0001666 ... Q92736 39278969
    887514 8uq4:D (3.64) BS02 ATP ? GO:0001666 ... Q92736 39278969
    887515 8uq4:D (3.64) BS03 ATP ? GO:0001666 ... Q92736 39278969
    887516 8uq5:A (3.96) BS01 ZN ? GO:0001666 ... Q92736 39278969
    887517 8uq5:A (3.96) BS02 ATP ? GO:0001666 ... Q92736 39278969
    887518 8uq5:A (3.96) BS03 ATP ? GO:0001666 ... Q92736 39278969
    887519 8uq5:B (3.96) BS01 ZN ? GO:0001666 ... Q92736 39278969
    887520 8uq5:B (3.96) BS02 ATP ? GO:0001666 ... Q92736 39278969
    887521 8uq5:B (3.96) BS03 ATP ? GO:0001666 ... Q92736 39278969
    887522 8uq5:C (3.96) BS01 ZN ? GO:0001666 ... Q92736 39278969
    887523 8uq5:C (3.96) BS02 ATP ? GO:0001666 ... Q92736 39278969
    887524 8uq5:C (3.96) BS03 ATP ? GO:0001666 ... Q92736 39278969
    887525 8uq5:D (3.96) BS01 ZN ? GO:0001666 ... Q92736 39278969
    887526 8uq5:D (3.96) BS02 ATP ? GO:0001666 ... Q92736 39278969
    887527 8uq5:D (3.96) BS03 ATP ? GO:0001666 ... Q92736 39278969
    887528 8uq7:A (2.31) BS01 X6R N/A GO:0008017 ... P10636 39353896
    887529 8uq7:B (2.31) BS01 X6R N/A GO:0008017 ... P10636 39353896
    887530 8uq7:C (2.31) BS01 X6R N/A GO:0008017 ... P10636 39353896
    887531 8uq7:D (2.31) BS01 X6R N/A GO:0008017 ... P10636 39353896
    887532 8uq8:A (2.34) BS01 ZN 2.3.2.23
    2.3.2.24
    2.3.2.27
    GO:0000122 ... P04908
    P61077
    Q16778
    Q8IYW5
    38242129
    887533 8uq8:A (2.34) BS02 ZN 2.3.2.23
    2.3.2.24
    2.3.2.27
    GO:0000122 ... P04908
    P61077
    Q16778
    Q8IYW5
    38242129
    887534 8uq8:a (2.34) BS01 ZN 2.3.2.23
    2.3.2.24
    2.3.2.27
    GO:0000122 ... P04908
    P61077
    Q16778
    Q8IYW5
    38242129
    887535 8uq8:a (2.34) BS02 ZN 2.3.2.23
    2.3.2.24
    2.3.2.27
    GO:0000122 ... P04908
    P61077
    Q16778
    Q8IYW5
    38242129
    887536 8uq9:A (2.3) BS01 ZN 2.3.2.23
    2.3.2.24
    2.3.2.27
    GO:0000122 ... P04908
    P61077
    Q16778
    Q8IYW5
    38242129
    887537 8uq9:A (2.3) BS02 ZN 2.3.2.23
    2.3.2.24
    2.3.2.27
    GO:0000122 ... P04908
    P61077
    Q16778
    Q8IYW5
    38242129
    887538 8uq9:a (2.3) BS01 ZN 2.3.2.23
    2.3.2.24
    2.3.2.27
    GO:0000122 ... P04908
    P61077
    Q16778
    Q8IYW5
    38242129
    887539 8uq9:a (2.3) BS02 ZN 2.3.2.23
    2.3.2.24
    2.3.2.27
    GO:0000122 ... P04908
    P61077
    Q16778
    Q8IYW5
    38242129
    887540 8uqa:K (2.049) BS01 ZN 2.3.2.23
    2.3.2.24
    2.3.2.27
    GO:0000122 ... P04908
    P61077
    Q16778
    Q8IYW5
    38242129
    887541 8uqa:K (2.049) BS02 ZN 2.3.2.23
    2.3.2.24
    2.3.2.27
    GO:0000122 ... P04908
    P61077
    Q16778
    Q8IYW5
    38242129
    887542 8uqb:A (2.484) BS01 ZN 2.3.2.23
    2.3.2.24
    2.3.2.27
    GO:0000122 ... P04908
    P61077
    Q16778
    Q8IYW5
    38242129
    887543 8uqb:A (2.484) BS02 ZN 2.3.2.23
    2.3.2.24
    2.3.2.27
    GO:0000122 ... P04908
    P61077
    Q16778
    Q8IYW5
    38242129
    887544 8uqc:A (2.61) BS01 ZN 2.3.2.23
    2.3.2.24
    2.3.2.27
    GO:0000122 ... P04908
    P61077
    Q16778
    Q8IYW5
    38242129
    887545 8uqc:A (2.61) BS02 ZN 2.3.2.23
    2.3.2.24
    2.3.2.27
    GO:0000122 ... P04908
    P61077
    Q16778
    Q8IYW5
    38242129
    887546 8uqf:A (1.52) BS01 HCY N/A N/A N/A N/A
    887547 8uqf:B (1.52) BS01 HCY N/A N/A N/A N/A
    887548 8uql:0 (3.2) BS01 rna N/A GO:0002181 ... P0AG48 39117885
    887549 8uql:1 (3.2) BS01 rna ? GO:0002181 ... P61175 39117885
    887550 8uql:2 (3.2) BS01 rna N/A GO:0000027 ... P0ADZ0 39117885
    887551 8uql:3 (3.2) BS01 rna N/A GO:0000027 ... P60624 39117885
    887552 8uql:4 (3.2) BS01 rna N/A GO:0000027 ... P68919 39117885
    887553 8uql:9 (3.2) BS01 rna ? GO:0002181 ... P0A7J3 39117885
    887554 8uql:AA (3.2) BS01 dna 2.7.7.6 GO:0000345 ... P0A8V2 39117885
    887555 8uql:AA (3.2) BS02 dna 2.7.7.6 GO:0000345 ... P0A8V2 39117885
    887556 8uql:AA (3.2) BS03 rna 2.7.7.6 GO:0000345 ... P0A8V2 39117885
    887557 8uql:AB (3.2) BS01 dna ? GO:0001000 ... P0AFW0 39117885
    887558 8uql:AE (3.2) BS01 dna 2.7.7.6 GO:0000287 ... P0A8T7 39117885
    887559 8uql:AE (3.2) BS02 dna 2.7.7.6 GO:0000287 ... P0A8T7 39117885
    887560 8uql:AE (3.2) BS03 rna 2.7.7.6 GO:0000287 ... P0A8T7 39117885
    887561 8uql:AE (3.2) BS04 MG 2.7.7.6 GO:0000287 ... P0A8T7 39117885
    887562 8uql:AE (3.2) BS05 ZN 2.7.7.6 GO:0000287 ... P0A8T7 39117885
    887563 8uql:AE (3.2) BS06 ZN 2.7.7.6 GO:0000287 ... P0A8T7 39117885
    887564 8uql:AF (3.2) BS01 rna 2.7.7.6 GO:0000345 ... P0A800 39117885
    887565 8uql:C (3.2) BS01 rna ? GO:0002181 ... P0A7T7 39117885
    887566 8uql:E (3.2) BS01 rna ? GO:0000028 ... P0A7U7 39117885
    887567 8uql:F (3.2) BS01 rna ? GO:0000028 ... P68679 39117885
    887568 8uql:G (3.2) BS01 rna ? GO:0000028 ... P0A7V0 39117885
    887569 8uql:I (3.2) BS01 rna ? GO:0000028 ... P0A7V3 39117885
    887570 8uql:I (3.2) BS02 rna ? GO:0000028 ... P0A7V3 39117885
    887571 8uql:J (3.2) BS01 rna ? GO:0000028 ... P0A7V8 39117885
    887572 8uql:K (3.2) BS01 rna ? GO:0000028 ... P0A7W1 39117885
    887573 8uql:K (3.2) BS02 rna ? GO:0000028 ... P0A7W1 39117885
    887574 8uql:L (3.2) BS01 rna ? GO:0002181 ... P02358 39117885
    887575 8uql:M (3.2) BS01 rna ? GO:0000028 ... P02359 39117885
    887576 8uql:M (3.2) BS02 rna ? GO:0000028 ... P02359 39117885
    887577 8uql:N (3.2) BS01 rna N/A GO:0000028 ... P0A7W7 39117885
    887578 8uql:O (3.2) BS01 rna N/A GO:0000049 ... P0A7X3 39117885
    887579 8uql:P (3.2) BS01 rna N/A GO:0000049 ... P0A7R5 39117885
    887580 8uql:Q (3.2) BS01 rna ? GO:0002181 ... P0A7R9 39117885
    887581 8uql:R (3.2) BS01 rna ? GO:0000049 ... P0A7S3 39117885
    887582 8uql:S (3.2) BS01 rna N/A GO:0000028 ... P0AG59 39117885
    887583 8uql:T (3.2) BS01 rna N/A GO:0000028 ... P0ADZ4 39117885
    887584 8uql:T (3.2) BS02 rna N/A GO:0000028 ... P0ADZ4 39117885
    887585 8uql:U (3.2) BS01 rna ? GO:0000028 ... P0A7T3 39117885
    887586 8uql:V (3.2) BS01 rna N/A GO:0000028 ... P0AG63 39117885
    887587 8uql:W (3.2) BS01 rna N/A GO:0000028 ... P0A7U3 39117885
    887588 8uql:X (3.2) BS01 rna ? GO:0000049 ... P0A7S9 39117885
    887589 8uql:X (3.2) BS02 rna ? GO:0000049 ... P0A7S9 39117885
    887590 8uql:Y (3.2) BS01 rna ? GO:0000027 ... P0A7J7 39117885
    887591 8uql:b (3.2) BS01 rna ? GO:0000027 ... P0A7L8 39117885
    887592 8uql:b (3.2) BS02 rna ? GO:0000027 ... P0A7L8 39117885
    887593 8uql:c (3.2) BS01 rna ? GO:0003735 ... A0A1X3JA73 39117885
    887594 8uql:e (3.2) BS01 rna N/A GO:0003735 ... N/A 39117885
    887595 8uql:f (3.2) BS01 rna N/A GO:0003735 ... N/A 39117885
    887596 8uql:f (3.2) BS02 rna N/A GO:0003735 ... N/A 39117885
    887597 8uql:g (3.2) BS01 rna ? GO:0002181 ... P0A7M9 39117885
    887598 8uql:h (3.2) BS01 rna ? GO:0000027 ... P60422 39117885
    887599 8uql:i (3.2) BS01 rna N/A GO:0003735 ... N/A 39117885
    887600 8uql:j (3.2) BS01 rna ? GO:0000027 ... P60438 39117885

    Reference:
  • Chengxin Zhang, Xi Zhang, Lydia Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).