SEQ2FUN

BioLiP
Download all results in tab-seperated text for 942758 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
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  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
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    # PDB
    (Resolution Å)
    Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    887801 8ur0:AE (3.4) BS02 dna 2.7.7.6 GO:0000287 ... P0A8T7 39117885
    887802 8ur0:AE (3.4) BS03 rna 2.7.7.6 GO:0000287 ... P0A8T7 39117885
    887803 8ur0:AE (3.4) BS04 rna 2.7.7.6 GO:0000287 ... P0A8T7 39117885
    887804 8ur0:AE (3.4) BS05 MG 2.7.7.6 GO:0000287 ... P0A8T7 39117885
    887805 8ur0:AE (3.4) BS06 ZN 2.7.7.6 GO:0000287 ... P0A8T7 39117885
    887806 8ur0:AE (3.4) BS07 ZN 2.7.7.6 GO:0000287 ... P0A8T7 39117885
    887807 8ur0:C (3.4) BS01 rna ? GO:0002181 ... P0A7T7 39117885
    887808 8ur0:E (3.4) BS01 rna ? GO:0000028 ... P0A7U7 39117885
    887809 8ur0:F (3.4) BS01 rna ? GO:0000028 ... P68679 39117885
    887810 8ur0:G (3.4) BS01 rna ? GO:0000028 ... P0A7V0 39117885
    887811 8ur0:I (3.4) BS01 rna ? GO:0000028 ... P0A7V3 39117885
    887812 8ur0:I (3.4) BS02 rna ? GO:0000028 ... P0A7V3 39117885
    887813 8ur0:J (3.4) BS01 rna ? GO:0000028 ... P0A7V8 39117885
    887814 8ur0:K (3.4) BS01 rna ? GO:0000028 ... P0A7W1 39117885
    887815 8ur0:K (3.4) BS02 rna ? GO:0000028 ... P0A7W1 39117885
    887816 8ur0:L (3.4) BS01 rna ? GO:0002181 ... P02358 39117885
    887817 8ur0:M (3.4) BS01 rna ? GO:0000028 ... P02359 39117885
    887818 8ur0:M (3.4) BS02 rna ? GO:0000028 ... P02359 39117885
    887819 8ur0:N (3.4) BS01 rna N/A GO:0000028 ... P0A7W7 39117885
    887820 8ur0:O (3.4) BS01 rna N/A GO:0000049 ... P0A7X3 39117885
    887821 8ur0:P (3.4) BS01 rna N/A GO:0000049 ... P0A7R5 39117885
    887822 8ur0:Q (3.4) BS01 rna ? GO:0002181 ... P0A7R9 39117885
    887823 8ur0:R (3.4) BS01 rna ? GO:0000049 ... P0A7S3 39117885
    887824 8ur0:S (3.4) BS01 rna N/A GO:0000028 ... P0AG59 39117885
    887825 8ur0:T (3.4) BS01 rna N/A GO:0000028 ... P0ADZ4 39117885
    887826 8ur0:T (3.4) BS02 rna N/A GO:0000028 ... P0ADZ4 39117885
    887827 8ur0:U (3.4) BS01 rna ? GO:0000028 ... P0A7T3 39117885
    887828 8ur0:V (3.4) BS01 rna N/A GO:0000028 ... P0AG63 39117885
    887829 8ur0:W (3.4) BS01 rna N/A GO:0000028 ... P0A7U3 39117885
    887830 8ur0:X (3.4) BS01 rna ? GO:0000049 ... P0A7S9 39117885
    887831 8ur0:X (3.4) BS02 rna ? GO:0000049 ... P0A7S9 39117885
    887832 8ur0:Y (3.4) BS01 rna ? GO:0000027 ... P0A7J7 39117885
    887833 8ur0:b (3.4) BS01 rna ? GO:0000027 ... P0A7L8 39117885
    887834 8ur0:b (3.4) BS02 rna ? GO:0000027 ... P0A7L8 39117885
    887835 8ur0:c (3.4) BS01 rna ? GO:0003735 ... A0A1X3JA73 39117885
    887836 8ur0:e (3.4) BS01 rna N/A GO:0003735 ... N/A 39117885
    887837 8ur0:f (3.4) BS01 rna N/A GO:0003735 ... N/A 39117885
    887838 8ur0:f (3.4) BS02 rna N/A GO:0003735 ... N/A 39117885
    887839 8ur0:g (3.4) BS01 rna ? GO:0002181 ... P0A7M9 39117885
    887840 8ur0:h (3.4) BS01 rna ? GO:0000027 ... P60422 39117885
    887841 8ur0:i (3.4) BS01 rna N/A GO:0003735 ... N/A 39117885
    887842 8ur0:j (3.4) BS01 rna ? GO:0000027 ... P60438 39117885
    887843 8ur0:k (3.4) BS01 rna N/A GO:0003735 ... N/A 39117885
    887844 8ur0:l (3.4) BS01 rna ? GO:0003735 ... A1AGK6 39117885
    887845 8ur0:m (3.4) BS01 rna ? GO:0003735 ... B7MGC4 39117885
    887846 8ur0:n (3.4) BS01 rna N/A GO:0003735 ... N/A 39117885
    887847 8ur0:n (3.4) BS02 rna N/A GO:0003735 ... N/A 39117885
    887848 8ur0:n (3.4) BS03 rna N/A GO:0003735 ... N/A 39117885
    887849 8ur0:o (3.4) BS01 rna ? GO:0002181 ... P0A7Q1 39117885
    887850 8ur0:p (3.4) BS01 rna ? GO:0002181 ... C3SR17 39117885
    887851 8ur0:q (3.4) BS01 rna ? GO:0003735 ... A0A0E2L017 39117885
    887852 8ur0:r (3.4) BS01 rna N/A GO:0003735 ... N/A 39117885
    887853 8ur0:s (3.4) BS01 rna N/A GO:0003735 ... N/A 39117885
    887854 8ur0:t (3.4) BS01 rna ? GO:0003735 ... S1NW45 39117885
    887855 8ur0:t (3.4) BS02 rna ? GO:0003735 ... S1NW45 39117885
    887856 8ur0:u (3.4) BS01 rna ? GO:0003735 ... A0A037Y8L6 39117885
    887857 8ur0:v (3.4) BS01 rna ? GO:0000027 ... P0ADY7 39117885
    887858 8ur0:v (3.4) BS02 rna ? GO:0000027 ... P0ADY7 39117885
    887859 8ur0:w (3.4) BS01 rna N/A GO:0003735 ... N/A 39117885
    887860 8ur0:x (3.4) BS01 rna N/A GO:0003735 ... N/A 39117885
    887861 8ur0:x (3.4) BS02 rna N/A GO:0003735 ... N/A 39117885
    887862 8ur0:y (3.4) BS01 rna N/A GO:0003735 ... N/A 39117885
    887863 8ur0:z (3.4) BS01 rna ? GO:0000027 ... B7MAS6 39117885
    887864 8ur2:B (1.9) BS01 PYR 5.3.2.1
    5.3.3.12
    GO:0005125 ... A2DXT4 39601418
    887865 8ur9:A (2.3) BS01 XEK 2.1.1.56
    2.1.1.57
    2.7.7.48
    2.7.7.50
    3.1.13.-
    3.4.19.12
    3.4.22.-
    3.4.22.69
    3.6.4.12
    3.6.4.13
    4.6.1.-
    GO:0008233 ... P0DTD1 38621119
    887866 8urb:A (3.4) BS01 rna 2.1.1.57
    3.4.19.12
    3.6.4.12
    3.6.4.13
    GO:0003723 ... U6BRU0 36993498
    887867 8urb:A (3.4) BS02 rna 2.1.1.57
    3.4.19.12
    3.6.4.12
    3.6.4.13
    GO:0003723 ... U6BRU0 36993498
    887868 8urb:A (3.4) BS03 ZN 2.1.1.57
    3.4.19.12
    3.6.4.12
    3.6.4.13
    GO:0003723 ... U6BRU0 36993498
    887869 8urb:A (3.4) BS04 ZN 2.1.1.57
    3.4.19.12
    3.6.4.12
    3.6.4.13
    GO:0003723 ... U6BRU0 36993498
    887870 8urc:A (2.5) BS01 FAD N/A GO:0071949 ... A0A372LQN7 39265075
    887871 8urc:A (2.5) BS02 DR9 N/A GO:0071949 ... A0A372LQN7 39265075
    887872 8urc:B (2.5) BS01 FAD N/A GO:0071949 ... A0A372LQN7 39265075
    887873 8urc:B (2.5) BS02 DR9 N/A GO:0071949 ... A0A372LQN7 39265075
    887874 8urc:B (2.5) BS03 DR9 N/A GO:0071949 ... A0A372LQN7 39265075
    887875 8urc:C (2.5) BS01 DR9 N/A GO:0071949 ... A0A372LQN7 39265075
    887876 8urc:C (2.5) BS02 DR9 N/A GO:0071949 ... A0A372LQN7 39265075
    887877 8urc:C (2.5) BS03 FAD N/A GO:0071949 ... A0A372LQN7 39265075
    887878 8urc:C (2.5) BS04 DR9 N/A GO:0071949 ... A0A372LQN7 39265075
    887879 8urd:A (2.8) BS01 FAD N/A GO:0071949 ... A0A372LQN7 39265075
    887880 8urd:A (2.8) BS02 WTQ N/A GO:0071949 ... A0A372LQN7 39265075
    887881 8urd:A (2.8) BS03 DR9 N/A GO:0071949 ... A0A372LQN7 39265075
    887882 8urd:B (2.8) BS01 FAD N/A GO:0071949 ... A0A372LQN7 39265075
    887883 8urd:B (2.8) BS02 WTQ N/A GO:0071949 ... A0A372LQN7 39265075
    887884 8urd:B (2.8) BS03 DR9 N/A GO:0071949 ... A0A372LQN7 39265075
    887885 8urd:C (2.8) BS01 DR9 N/A GO:0071949 ... A0A372LQN7 39265075
    887886 8urd:C (2.8) BS02 FAD N/A GO:0071949 ... A0A372LQN7 39265075
    887887 8urd:C (2.8) BS03 DR9 N/A GO:0071949 ... A0A372LQN7 39265075
    887888 8urd:C (2.8) BS04 WTQ N/A GO:0071949 ... A0A372LQN7 39265075
    887889 8urf:A (1.9) BS01 CA N/A N/A P07307 38847394
    887890 8urf:A (1.9) BS02 CA N/A N/A P07307 38847394
    887891 8urf:A (1.9) BS03 CA N/A N/A P07307 38847394
    887892 8urh:0 (5.7) BS01 rna N/A GO:0002181 ... P0AG48 39117885
    887893 8urh:1 (5.7) BS01 rna ? GO:0002181 ... P61175 39117885
    887894 8urh:2 (5.7) BS01 rna N/A GO:0000027 ... P0ADZ0 39117885
    887895 8urh:3 (5.7) BS01 rna N/A GO:0000027 ... P60624 39117885
    887896 8urh:4 (5.7) BS01 rna N/A GO:0000027 ... P68919 39117885
    887897 8urh:9 (5.7) BS01 rna ? GO:0002181 ... P0A7J3 39117885
    887898 8urh:AA (5.7) BS01 dna 2.7.7.6 GO:0000345 ... P0A8V2 39117885
    887899 8urh:AA (5.7) BS02 dna 2.7.7.6 GO:0000345 ... P0A8V2 39117885
    887900 8urh:AA (5.7) BS03 rna 2.7.7.6 GO:0000345 ... P0A8V2 39117885
    887901 8urh:AB (5.7) BS01 dna ? GO:0001000 ... P0AFW0 39117885
    887902 8urh:AE (5.7) BS01 dna 2.7.7.6 GO:0000287 ... P0A8T7 39117885
    887903 8urh:AE (5.7) BS02 dna 2.7.7.6 GO:0000287 ... P0A8T7 39117885
    887904 8urh:AE (5.7) BS03 rna 2.7.7.6 GO:0000287 ... P0A8T7 39117885
    887905 8urh:AE (5.7) BS04 MG 2.7.7.6 GO:0000287 ... P0A8T7 39117885
    887906 8urh:AE (5.7) BS05 ZN 2.7.7.6 GO:0000287 ... P0A8T7 39117885
    887907 8urh:AE (5.7) BS06 ZN 2.7.7.6 GO:0000287 ... P0A8T7 39117885
    887908 8urh:AF (5.7) BS01 rna 2.7.7.6 GO:0000345 ... P0A800 39117885
    887909 8urh:C (5.7) BS01 rna ? GO:0002181 ... P0A7T7 39117885
    887910 8urh:E (5.7) BS01 rna ? GO:0000028 ... P0A7U7 39117885
    887911 8urh:F (5.7) BS01 rna ? GO:0000028 ... P68679 39117885
    887912 8urh:G (5.7) BS01 rna ? GO:0000028 ... P0A7V0 39117885
    887913 8urh:I (5.7) BS01 rna ? GO:0000028 ... P0A7V3 39117885
    887914 8urh:I (5.7) BS02 rna ? GO:0000028 ... P0A7V3 39117885
    887915 8urh:J (5.7) BS01 rna ? GO:0000028 ... P0A7V8 39117885
    887916 8urh:K (5.7) BS01 rna ? GO:0000028 ... P0A7W1 39117885
    887917 8urh:K (5.7) BS02 rna ? GO:0000028 ... P0A7W1 39117885
    887918 8urh:L (5.7) BS01 rna ? GO:0002181 ... P02358 39117885
    887919 8urh:M (5.7) BS01 rna ? GO:0000028 ... P02359 39117885
    887920 8urh:M (5.7) BS02 rna ? GO:0000028 ... P02359 39117885
    887921 8urh:N (5.7) BS01 rna N/A GO:0000028 ... P0A7W7 39117885
    887922 8urh:O (5.7) BS01 rna N/A GO:0000049 ... P0A7X3 39117885
    887923 8urh:P (5.7) BS01 rna N/A GO:0000049 ... P0A7R5 39117885
    887924 8urh:Q (5.7) BS01 rna ? GO:0002181 ... P0A7R9 39117885
    887925 8urh:R (5.7) BS01 rna ? GO:0000049 ... P0A7S3 39117885
    887926 8urh:S (5.7) BS01 rna N/A GO:0000028 ... P0AG59 39117885
    887927 8urh:T (5.7) BS01 rna N/A GO:0000028 ... P0ADZ4 39117885
    887928 8urh:T (5.7) BS02 rna N/A GO:0000028 ... P0ADZ4 39117885
    887929 8urh:U (5.7) BS01 rna ? GO:0000028 ... P0A7T3 39117885
    887930 8urh:V (5.7) BS01 rna N/A GO:0000028 ... P0AG63 39117885
    887931 8urh:W (5.7) BS01 rna N/A GO:0000028 ... P0A7U3 39117885
    887932 8urh:X (5.7) BS01 rna ? GO:0000049 ... P0A7S9 39117885
    887933 8urh:X (5.7) BS02 rna ? GO:0000049 ... P0A7S9 39117885
    887934 8urh:Y (5.7) BS01 rna ? GO:0000027 ... P0A7J7 39117885
    887935 8urh:b (5.7) BS01 rna ? GO:0000027 ... P0A7L8 39117885
    887936 8urh:b (5.7) BS02 rna ? GO:0000027 ... P0A7L8 39117885
    887937 8urh:c (5.7) BS01 rna ? GO:0003735 ... A0A1X3JA73 39117885
    887938 8urh:e (5.7) BS01 rna N/A GO:0003735 ... N/A 39117885
    887939 8urh:f (5.7) BS01 rna N/A GO:0003735 ... N/A 39117885
    887940 8urh:f (5.7) BS02 rna N/A GO:0003735 ... N/A 39117885
    887941 8urh:g (5.7) BS01 rna ? GO:0002181 ... P0A7M9 39117885
    887942 8urh:h (5.7) BS01 rna ? GO:0000027 ... P60422 39117885
    887943 8urh:i (5.7) BS01 rna N/A GO:0003735 ... N/A 39117885
    887944 8urh:j (5.7) BS01 rna ? GO:0000027 ... P60438 39117885
    887945 8urh:k (5.7) BS01 rna N/A GO:0003735 ... N/A 39117885
    887946 8urh:l (5.7) BS01 rna ? GO:0003735 ... A1AGK6 39117885
    887947 8urh:m (5.7) BS01 rna ? GO:0003735 ... B7MGC4 39117885
    887948 8urh:n (5.7) BS01 rna N/A GO:0003735 ... N/A 39117885
    887949 8urh:n (5.7) BS02 rna N/A GO:0003735 ... N/A 39117885
    887950 8urh:n (5.7) BS03 rna N/A GO:0003735 ... N/A 39117885
    887951 8urh:o (5.7) BS01 rna ? GO:0002181 ... P0A7Q1 39117885
    887952 8urh:p (5.7) BS01 rna ? GO:0002181 ... C3SR17 39117885
    887953 8urh:q (5.7) BS01 rna ? GO:0003735 ... A0A0E2L017 39117885
    887954 8urh:r (5.7) BS01 rna N/A GO:0003735 ... N/A 39117885
    887955 8urh:s (5.7) BS01 rna N/A GO:0003735 ... N/A 39117885
    887956 8urh:t (5.7) BS01 rna ? GO:0003735 ... S1NW45 39117885
    887957 8urh:t (5.7) BS02 rna ? GO:0003735 ... S1NW45 39117885
    887958 8urh:u (5.7) BS01 rna ? GO:0003735 ... A0A037Y8L6 39117885
    887959 8urh:v (5.7) BS01 rna ? GO:0000027 ... P0ADY7 39117885
    887960 8urh:v (5.7) BS02 rna ? GO:0000027 ... P0ADY7 39117885
    887961 8urh:w (5.7) BS01 rna N/A GO:0003735 ... N/A 39117885
    887962 8urh:x (5.7) BS01 rna N/A GO:0003735 ... N/A 39117885
    887963 8urh:x (5.7) BS02 rna N/A GO:0003735 ... N/A 39117885
    887964 8urh:y (5.7) BS01 rna N/A GO:0003735 ... N/A 39117885
    887965 8urh:z (5.7) BS01 rna ? GO:0000027 ... B7MAS6 39117885
    887966 8uri:0 (5.3) BS01 rna N/A GO:0002181 ... P0AG48 39117885
    887967 8uri:1 (5.3) BS01 rna ? GO:0002181 ... P61175 39117885
    887968 8uri:2 (5.3) BS01 rna N/A GO:0000027 ... P0ADZ0 39117885
    887969 8uri:3 (5.3) BS01 rna N/A GO:0000027 ... P60624 39117885
    887970 8uri:4 (5.3) BS01 rna N/A GO:0000027 ... P68919 39117885
    887971 8uri:9 (5.3) BS01 rna ? GO:0002181 ... P0A7J3 39117885
    887972 8uri:AA (5.3) BS01 dna 2.7.7.6 GO:0000345 ... P0A8V2 39117885
    887973 8uri:AA (5.3) BS02 dna 2.7.7.6 GO:0000345 ... P0A8V2 39117885
    887974 8uri:AA (5.3) BS03 rna 2.7.7.6 GO:0000345 ... P0A8V2 39117885
    887975 8uri:AB (5.3) BS01 dna ? GO:0001000 ... P0AFW0 39117885
    887976 8uri:AE (5.3) BS01 dna 2.7.7.6 GO:0000287 ... P0A8T7 39117885
    887977 8uri:AE (5.3) BS02 dna 2.7.7.6 GO:0000287 ... P0A8T7 39117885
    887978 8uri:AE (5.3) BS03 rna 2.7.7.6 GO:0000287 ... P0A8T7 39117885
    887979 8uri:AE (5.3) BS04 MG 2.7.7.6 GO:0000287 ... P0A8T7 39117885
    887980 8uri:AE (5.3) BS05 ZN 2.7.7.6 GO:0000287 ... P0A8T7 39117885
    887981 8uri:AE (5.3) BS06 ZN 2.7.7.6 GO:0000287 ... P0A8T7 39117885
    887982 8uri:C (5.3) BS01 rna ? GO:0002181 ... P0A7T7 39117885
    887983 8uri:E (5.3) BS01 rna ? GO:0000028 ... P0A7U7 39117885
    887984 8uri:F (5.3) BS01 rna ? GO:0000028 ... P68679 39117885
    887985 8uri:G (5.3) BS01 rna ? GO:0000028 ... P0A7V0 39117885
    887986 8uri:I (5.3) BS01 rna ? GO:0000028 ... P0A7V3 39117885
    887987 8uri:I (5.3) BS02 rna ? GO:0000028 ... P0A7V3 39117885
    887988 8uri:J (5.3) BS01 rna ? GO:0000028 ... P0A7V8 39117885
    887989 8uri:K (5.3) BS01 rna ? GO:0000028 ... P0A7W1 39117885
    887990 8uri:K (5.3) BS02 rna ? GO:0000028 ... P0A7W1 39117885
    887991 8uri:L (5.3) BS01 rna ? GO:0002181 ... P02358 39117885
    887992 8uri:M (5.3) BS01 rna ? GO:0000028 ... P02359 39117885
    887993 8uri:M (5.3) BS02 rna ? GO:0000028 ... P02359 39117885
    887994 8uri:N (5.3) BS01 rna N/A GO:0000028 ... P0A7W7 39117885
    887995 8uri:O (5.3) BS01 rna N/A GO:0000049 ... P0A7X3 39117885
    887996 8uri:P (5.3) BS01 rna N/A GO:0000049 ... P0A7R5 39117885
    887997 8uri:Q (5.3) BS01 rna ? GO:0002181 ... P0A7R9 39117885
    887998 8uri:R (5.3) BS01 rna ? GO:0000049 ... P0A7S3 39117885
    887999 8uri:S (5.3) BS01 rna N/A GO:0000028 ... P0AG59 39117885
    888000 8uri:T (5.3) BS01 rna N/A GO:0000028 ... P0ADZ4 39117885

    Reference:
  • Chengxin Zhang, Xi Zhang, Lydia Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).