SEQ2FUN

BioLiP
Download all results in tab-seperated text for 942758 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.
  • Sort results by
    << < 4431 4432 4433 4434 4435 4436 4437 4438 4439 4440 4441 4442 4443 4444 4445 4446 4447 4448 4449 4450 4451 > >>
    Go to page

    # PDB
    (Resolution Å)
    Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    888001 8uri:T (5.3) BS02 rna N/A GO:0000028 ... P0ADZ4 39117885
    888002 8uri:U (5.3) BS01 rna ? GO:0000028 ... P0A7T3 39117885
    888003 8uri:V (5.3) BS01 rna N/A GO:0000028 ... P0AG63 39117885
    888004 8uri:W (5.3) BS01 rna N/A GO:0000028 ... P0A7U3 39117885
    888005 8uri:X (5.3) BS01 rna ? GO:0000049 ... P0A7S9 39117885
    888006 8uri:X (5.3) BS02 rna ? GO:0000049 ... P0A7S9 39117885
    888007 8uri:Y (5.3) BS01 rna ? GO:0000027 ... P0A7J7 39117885
    888008 8uri:b (5.3) BS01 rna ? GO:0000027 ... P0A7L8 39117885
    888009 8uri:b (5.3) BS02 rna ? GO:0000027 ... P0A7L8 39117885
    888010 8uri:c (5.3) BS01 rna ? GO:0003735 ... A0A1X3JA73 39117885
    888011 8uri:e (5.3) BS01 rna N/A GO:0003735 ... N/A 39117885
    888012 8uri:f (5.3) BS01 rna N/A GO:0003735 ... N/A 39117885
    888013 8uri:f (5.3) BS02 rna N/A GO:0003735 ... N/A 39117885
    888014 8uri:g (5.3) BS01 rna ? GO:0002181 ... P0A7M9 39117885
    888015 8uri:h (5.3) BS01 rna ? GO:0000027 ... P60422 39117885
    888016 8uri:i (5.3) BS01 rna N/A GO:0003735 ... N/A 39117885
    888017 8uri:j (5.3) BS01 rna ? GO:0000027 ... P60438 39117885
    888018 8uri:k (5.3) BS01 rna N/A GO:0003735 ... N/A 39117885
    888019 8uri:l (5.3) BS01 rna ? GO:0003735 ... A1AGK6 39117885
    888020 8uri:m (5.3) BS01 rna ? GO:0003735 ... B7MGC4 39117885
    888021 8uri:n (5.3) BS01 rna N/A GO:0003735 ... N/A 39117885
    888022 8uri:n (5.3) BS02 rna N/A GO:0003735 ... N/A 39117885
    888023 8uri:n (5.3) BS03 rna N/A GO:0003735 ... N/A 39117885
    888024 8uri:o (5.3) BS01 rna ? GO:0002181 ... P0A7Q1 39117885
    888025 8uri:p (5.3) BS01 rna ? GO:0002181 ... C3SR17 39117885
    888026 8uri:q (5.3) BS01 rna ? GO:0003735 ... A0A0E2L017 39117885
    888027 8uri:r (5.3) BS01 rna N/A GO:0003735 ... N/A 39117885
    888028 8uri:s (5.3) BS01 rna N/A GO:0003735 ... N/A 39117885
    888029 8uri:t (5.3) BS01 rna ? GO:0003735 ... S1NW45 39117885
    888030 8uri:t (5.3) BS02 rna ? GO:0003735 ... S1NW45 39117885
    888031 8uri:u (5.3) BS01 rna ? GO:0003735 ... A0A037Y8L6 39117885
    888032 8uri:v (5.3) BS01 rna ? GO:0000027 ... P0ADY7 39117885
    888033 8uri:v (5.3) BS02 rna ? GO:0000027 ... P0ADY7 39117885
    888034 8uri:w (5.3) BS01 rna N/A GO:0003735 ... N/A 39117885
    888035 8uri:x (5.3) BS01 rna N/A GO:0003735 ... N/A 39117885
    888036 8uri:x (5.3) BS02 rna N/A GO:0003735 ... N/A 39117885
    888037 8uri:y (5.3) BS01 rna N/A GO:0003735 ... N/A 39117885
    888038 8uri:z (5.3) BS01 rna ? GO:0000027 ... B7MAS6 39117885
    888039 8urk:A (2.11) BS01 dna N/A GO:0003676 ... A0A8I1DKW0 39244607
    888040 8urk:A (2.11) BS02 dna N/A GO:0003676 ... A0A8I1DKW0 39244607
    888041 8urk:A (2.11) BS03 dna N/A GO:0003676 ... A0A8I1DKW0 39244607
    888042 8urk:A (2.11) BS04 dna N/A GO:0003676 ... A0A8I1DKW0 39244607
    888043 8urk:A (2.11) BS05 FRU N/A GO:0003676 ... A0A8I1DKW0 39244607
    888044 8urk:A (2.11) BS06 SFG N/A GO:0003676 ... A0A8I1DKW0 39244607
    888045 8urk:B (2.11) BS01 dna N/A GO:0003676 ... A0A8I1DKW0 39244607
    888046 8urk:B (2.11) BS02 dna N/A GO:0003676 ... A0A8I1DKW0 39244607
    888047 8urk:B (2.11) BS03 dna N/A GO:0003676 ... A0A8I1DKW0 39244607
    888048 8urk:B (2.11) BS04 FRU N/A GO:0003676 ... A0A8I1DKW0 39244607
    888049 8urk:B (2.11) BS05 FRU N/A GO:0003676 ... A0A8I1DKW0 39244607
    888050 8urk:B (2.11) BS06 SFG N/A GO:0003676 ... A0A8I1DKW0 39244607
    888051 8urk:C (2.11) BS01 dna N/A GO:0003676 ... A0A8I1DKW0 39244607
    888052 8urk:C (2.11) BS02 dna N/A GO:0003676 ... A0A8I1DKW0 39244607
    888053 8urk:C (2.11) BS03 dna N/A GO:0003676 ... A0A8I1DKW0 39244607
    888054 8urk:C (2.11) BS04 SFG N/A GO:0003676 ... A0A8I1DKW0 39244607
    888055 8urk:D (2.11) BS01 dna N/A GO:0003676 ... A0A8I1DKW0 39244607
    888056 8urk:D (2.11) BS02 dna N/A GO:0003676 ... A0A8I1DKW0 39244607
    888057 8urk:D (2.11) BS03 dna N/A GO:0003676 ... A0A8I1DKW0 39244607
    888058 8urk:D (2.11) BS04 SFG N/A GO:0003676 ... A0A8I1DKW0 39244607
    888059 8url:A (2.2) BS01 CA N/A GO:0004308 ... N/A N/A
    888060 8url:A (2.2) BS02 CA N/A GO:0004308 ... N/A N/A
    888061 8urp:A (2.9) BS01 MG N/A GO:0004142 ... P17898 39747155
    888062 8urp:A (2.9) BS02 MG N/A GO:0004142 ... P17898 39747155
    888063 8urp:A (2.9) BS03 CDC N/A GO:0004142 ... P17898 39747155
    888064 8urp:B (2.9) BS01 MG N/A GO:0004142 ... P17898 39747155
    888065 8urp:B (2.9) BS02 MG N/A GO:0004142 ... P17898 39747155
    888066 8urp:B (2.9) BS03 CDC N/A GO:0004142 ... P17898 39747155
    888067 8urq:A (3.3) BS01 dna N/A GO:0000228 ... P23179 39304764
    888068 8urq:A (3.3) BS02 MG N/A GO:0000228 ... P23179 39304764
    888069 8urq:B (3.3) BS01 dna N/A GO:0000794 ... Q02721 39304764
    888070 8urq:F (3.3) BS01 dna N/A GO:0000794 ... P33323 39304764
    888071 8urt:A (3.1) BS01 MG N/A GO:0004142 ... P17898 39747155
    888072 8urt:A (3.1) BS02 MG N/A GO:0004142 ... P17898 39747155
    888073 8urt:A (3.1) BS03 CTI N/A GO:0004142 ... P17898 39747155
    888074 8urt:B (3.1) BS01 MG N/A GO:0004142 ... P17898 39747155
    888075 8urt:B (3.1) BS02 CTI N/A GO:0004142 ... P17898 39747155
    888076 8uru:A (3.7) BS01 dna N/A GO:0000228 ... P23179 39304764
    888077 8uru:A (3.7) BS02 MG N/A GO:0000228 ... P23179 39304764
    888078 8uru:F (3.7) BS01 dna N/A GO:0000794 ... P33323 39304764
    888079 8urw:C (2.79) BS01 dna 2.7.7.6 GO:0000428 ... Q31N17 38354263
    888080 8urw:C (2.79) BS02 dna 2.7.7.6 GO:0000428 ... Q31N17 38354263
    888081 8urw:C (2.79) BS03 rna 2.7.7.6 GO:0000428 ... Q31N17 38354263
    888082 8urw:D (2.79) BS01 dna 2.7.7.6 GO:0000287 ... P42079 38354263
    888083 8urw:D (2.79) BS02 dna 2.7.7.6 GO:0000287 ... P42079 38354263
    888084 8urw:D (2.79) BS03 rna 2.7.7.6 GO:0000287 ... P42079 38354263
    888085 8urw:D (2.79) BS04 MG 2.7.7.6 GO:0000287 ... P42079 38354263
    888086 8urw:D (2.79) BS05 ZN 2.7.7.6 GO:0000287 ... P42079 38354263
    888087 8urw:G (2.79) BS01 dna ? GO:0005829 ... Q31QK2 38354263
    888088 8urw:Z (2.79) BS01 dna 2.7.7.6 GO:0000428 ... Q31N15 38354263
    888089 8urw:Z (2.79) BS02 ZN 2.7.7.6 GO:0000428 ... Q31N15 38354263
    888090 8urw:Z (2.79) BS03 CTP 2.7.7.6 GO:0000428 ... Q31N15 38354263
    888091 8urx:0 (6.6) BS01 rna N/A GO:0002181 ... P0AG48 39117885
    888092 8urx:1 (6.6) BS01 rna ? GO:0002181 ... P61175 39117885
    888093 8urx:2 (6.6) BS01 rna N/A GO:0000027 ... P0ADZ0 39117885
    888094 8urx:3 (6.6) BS01 rna N/A GO:0000027 ... P60624 39117885
    888095 8urx:4 (6.6) BS01 rna N/A GO:0000027 ... P68919 39117885
    888096 8urx:9 (6.6) BS01 rna ? GO:0002181 ... P0A7J3 39117885
    888097 8urx:AA (6.6) BS01 dna 2.7.7.6 GO:0000345 ... P0A8V2 39117885
    888098 8urx:AA (6.6) BS02 dna 2.7.7.6 GO:0000345 ... P0A8V2 39117885
    888099 8urx:AA (6.6) BS03 rna 2.7.7.6 GO:0000345 ... P0A8V2 39117885
    888100 8urx:AB (6.6) BS01 dna ? GO:0001000 ... P0AFW0 39117885
    888101 8urx:AE (6.6) BS01 dna 2.7.7.6 GO:0000287 ... P0A8T7 39117885
    888102 8urx:AE (6.6) BS02 dna 2.7.7.6 GO:0000287 ... P0A8T7 39117885
    888103 8urx:AE (6.6) BS03 rna 2.7.7.6 GO:0000287 ... P0A8T7 39117885
    888104 8urx:AE (6.6) BS04 MG 2.7.7.6 GO:0000287 ... P0A8T7 39117885
    888105 8urx:AE (6.6) BS05 ZN 2.7.7.6 GO:0000287 ... P0A8T7 39117885
    888106 8urx:AE (6.6) BS06 ZN 2.7.7.6 GO:0000287 ... P0A8T7 39117885
    888107 8urx:C (6.6) BS01 rna ? GO:0002181 ... P0A7T7 39117885
    888108 8urx:E (6.6) BS01 rna ? GO:0000028 ... P0A7U7 39117885
    888109 8urx:F (6.6) BS01 rna ? GO:0000028 ... P68679 39117885
    888110 8urx:G (6.6) BS01 rna ? GO:0000028 ... P0A7V0 39117885
    888111 8urx:I (6.6) BS01 rna ? GO:0000028 ... P0A7V3 39117885
    888112 8urx:I (6.6) BS02 rna ? GO:0000028 ... P0A7V3 39117885
    888113 8urx:J (6.6) BS01 rna ? GO:0000028 ... P0A7V8 39117885
    888114 8urx:K (6.6) BS01 rna ? GO:0000028 ... P0A7W1 39117885
    888115 8urx:K (6.6) BS02 rna ? GO:0000028 ... P0A7W1 39117885
    888116 8urx:L (6.6) BS01 rna ? GO:0002181 ... P02358 39117885
    888117 8urx:M (6.6) BS01 rna ? GO:0000028 ... P02359 39117885
    888118 8urx:M (6.6) BS02 rna ? GO:0000028 ... P02359 39117885
    888119 8urx:N (6.6) BS01 rna N/A GO:0000028 ... P0A7W7 39117885
    888120 8urx:O (6.6) BS01 rna N/A GO:0000049 ... P0A7X3 39117885
    888121 8urx:P (6.6) BS01 rna N/A GO:0000049 ... P0A7R5 39117885
    888122 8urx:Q (6.6) BS01 rna ? GO:0002181 ... P0A7R9 39117885
    888123 8urx:R (6.6) BS01 rna ? GO:0000049 ... P0A7S3 39117885
    888124 8urx:S (6.6) BS01 rna N/A GO:0000028 ... P0AG59 39117885
    888125 8urx:T (6.6) BS01 rna N/A GO:0000028 ... P0ADZ4 39117885
    888126 8urx:T (6.6) BS02 rna N/A GO:0000028 ... P0ADZ4 39117885
    888127 8urx:U (6.6) BS01 rna ? GO:0000028 ... P0A7T3 39117885
    888128 8urx:V (6.6) BS01 rna N/A GO:0000028 ... P0AG63 39117885
    888129 8urx:W (6.6) BS01 rna N/A GO:0000028 ... P0A7U3 39117885
    888130 8urx:X (6.6) BS01 rna ? GO:0000049 ... P0A7S9 39117885
    888131 8urx:X (6.6) BS02 rna ? GO:0000049 ... P0A7S9 39117885
    888132 8urx:Y (6.6) BS01 rna ? GO:0000027 ... P0A7J7 39117885
    888133 8urx:b (6.6) BS01 rna ? GO:0000027 ... P0A7L8 39117885
    888134 8urx:b (6.6) BS02 rna ? GO:0000027 ... P0A7L8 39117885
    888135 8urx:c (6.6) BS01 rna ? GO:0003735 ... A0A1X3JA73 39117885
    888136 8urx:e (6.6) BS01 rna N/A GO:0003735 ... N/A 39117885
    888137 8urx:f (6.6) BS01 rna N/A GO:0003735 ... N/A 39117885
    888138 8urx:f (6.6) BS02 rna N/A GO:0003735 ... N/A 39117885
    888139 8urx:g (6.6) BS01 rna ? GO:0002181 ... P0A7M9 39117885
    888140 8urx:h (6.6) BS01 rna ? GO:0000027 ... P60422 39117885
    888141 8urx:i (6.6) BS01 rna N/A GO:0003735 ... N/A 39117885
    888142 8urx:j (6.6) BS01 rna ? GO:0000027 ... P60438 39117885
    888143 8urx:k (6.6) BS01 rna N/A GO:0003735 ... N/A 39117885
    888144 8urx:l (6.6) BS01 rna ? GO:0003735 ... A1AGK6 39117885
    888145 8urx:m (6.6) BS01 rna ? GO:0003735 ... B7MGC4 39117885
    888146 8urx:n (6.6) BS01 rna N/A GO:0003735 ... N/A 39117885
    888147 8urx:n (6.6) BS02 rna N/A GO:0003735 ... N/A 39117885
    888148 8urx:n (6.6) BS03 rna N/A GO:0003735 ... N/A 39117885
    888149 8urx:o (6.6) BS01 rna ? GO:0002181 ... P0A7Q1 39117885
    888150 8urx:p (6.6) BS01 rna ? GO:0002181 ... C3SR17 39117885
    888151 8urx:q (6.6) BS01 rna ? GO:0003735 ... A0A0E2L017 39117885
    888152 8urx:r (6.6) BS01 rna N/A GO:0003735 ... N/A 39117885
    888153 8urx:s (6.6) BS01 rna N/A GO:0003735 ... N/A 39117885
    888154 8urx:t (6.6) BS01 rna ? GO:0003735 ... S1NW45 39117885
    888155 8urx:t (6.6) BS02 rna ? GO:0003735 ... S1NW45 39117885
    888156 8urx:u (6.6) BS01 rna ? GO:0003735 ... A0A037Y8L6 39117885
    888157 8urx:v (6.6) BS01 rna ? GO:0000027 ... P0ADY7 39117885
    888158 8urx:v (6.6) BS02 rna ? GO:0000027 ... P0ADY7 39117885
    888159 8urx:w (6.6) BS01 rna N/A GO:0003735 ... N/A 39117885
    888160 8urx:x (6.6) BS01 rna N/A GO:0003735 ... N/A 39117885
    888161 8urx:x (6.6) BS02 rna N/A GO:0003735 ... N/A 39117885
    888162 8urx:y (6.6) BS01 rna N/A GO:0003735 ... N/A 39117885
    888163 8urx:z (6.6) BS01 rna ? GO:0000027 ... B7MAS6 39117885
    888164 8ury:0 (3.1) BS01 rna ? GO:0002181 ... P0AG48 39117885
    888165 8ury:1 (3.1) BS01 rna ? GO:0002181 ... P61175 39117885
    888166 8ury:2 (3.1) BS01 rna ? GO:0000027 ... P0ADZ0 39117885
    888167 8ury:3 (3.1) BS01 rna ? GO:0000027 ... P60624 39117885
    888168 8ury:4 (3.1) BS01 rna ? GO:0000027 ... P68919 39117885
    888169 8ury:9 (3.1) BS01 rna ? GO:0002181 ... P0A7J3 39117885
    888170 8ury:AA (3.1) BS01 dna 2.7.7.6 GO:0000345 ... P0A8V2 39117885
    888171 8ury:AA (3.1) BS02 dna 2.7.7.6 GO:0000345 ... P0A8V2 39117885
    888172 8ury:AA (3.1) BS03 rna 2.7.7.6 GO:0000345 ... P0A8V2 39117885
    888173 8ury:AB (3.1) BS01 dna ? GO:0001000 ... P0AFW0 39117885
    888174 8ury:AE (3.1) BS01 dna 2.7.7.6 GO:0000287 ... P0A8T7 39117885
    888175 8ury:AE (3.1) BS02 dna 2.7.7.6 GO:0000287 ... P0A8T7 39117885
    888176 8ury:AE (3.1) BS03 rna 2.7.7.6 GO:0000287 ... P0A8T7 39117885
    888177 8ury:AE (3.1) BS04 MG 2.7.7.6 GO:0000287 ... P0A8T7 39117885
    888178 8ury:AE (3.1) BS05 ZN 2.7.7.6 GO:0000287 ... P0A8T7 39117885
    888179 8ury:AE (3.1) BS06 ZN 2.7.7.6 GO:0000287 ... P0A8T7 39117885
    888180 8ury:C (3.1) BS01 rna ? GO:0002181 ... P0A7T7 39117885
    888181 8ury:E (3.1) BS01 rna ? GO:0000028 ... P0A7U7 39117885
    888182 8ury:F (3.1) BS01 rna ? GO:0000028 ... P68679 39117885
    888183 8ury:G (3.1) BS01 rna ? GO:0000028 ... P0A7V0 39117885
    888184 8ury:I (3.1) BS01 rna ? GO:0000028 ... P0A7V3 39117885
    888185 8ury:I (3.1) BS02 rna ? GO:0000028 ... P0A7V3 39117885
    888186 8ury:J (3.1) BS01 rna ? GO:0000028 ... P0A7V8 39117885
    888187 8ury:K (3.1) BS01 rna ? GO:0000028 ... P0A7W1 39117885
    888188 8ury:K (3.1) BS02 rna ? GO:0000028 ... P0A7W1 39117885
    888189 8ury:L (3.1) BS01 rna ? GO:0003735 ... P02358 39117885
    888190 8ury:M (3.1) BS01 rna ? GO:0000028 ... P02359 39117885
    888191 8ury:M (3.1) BS02 rna ? GO:0000028 ... P02359 39117885
    888192 8ury:N (3.1) BS01 rna ? GO:0000028 ... P0A7W7 39117885
    888193 8ury:O (3.1) BS01 rna ? GO:0000049 ... P0A7X3 39117885
    888194 8ury:P (3.1) BS01 rna ? GO:0000049 ... P0A7R5 39117885
    888195 8ury:Q (3.1) BS01 rna ? GO:0002181 ... P0A7R9 39117885
    888196 8ury:R (3.1) BS01 rna ? GO:0000049 ... P0A7S3 39117885
    888197 8ury:S (3.1) BS01 rna ? GO:0000028 ... P0AG59 39117885
    888198 8ury:T (3.1) BS01 rna ? GO:0000028 ... P0ADZ4 39117885
    888199 8ury:T (3.1) BS02 rna ? GO:0000028 ... P0ADZ4 39117885
    888200 8ury:U (3.1) BS01 rna ? GO:0000028 ... P0A7T3 39117885

    Reference:
  • Chengxin Zhang, Xi Zhang, Lydia Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).