SEQ2FUN

BioLiP
Download all results in tab-seperated text for 1072681 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
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  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
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    # PDB
    (Resolution Å)
    Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    888601 8twb:2 (3.2) BS03 MG N/A GO:0000076 ... P40348 39088616
    888602 8twb:3 (3.2) BS01 AGS N/A GO:0000077 ... P38629 39088616
    888603 8twb:3 (3.2) BS02 MG N/A GO:0000077 ... P38629 39088616
    888604 8twb:4 (3.2) BS01 AGS N/A GO:0000077 ... P40339 39088616
    888605 8twb:5 (3.2) BS01 dna N/A GO:0000077 ... P38251 39088616
    888606 8twb:5 (3.2) BS02 AGS N/A GO:0000077 ... P38251 39088616
    888607 8twb:5 (3.2) BS03 ADP N/A GO:0000077 ... P38251 39088616
    888608 8twe:A (2.55) BS01 peptide ? GO:0000159 ... P30153 38123684
    888609 8twe:B (2.55) BS01 peptide ? GO:0000159 ... P63151 38123684
    888610 8twe:B (2.55) BS02 peptide ? GO:0000159 ... P63151 38123684
    888611 8twf:A (2.4) BS01 FAD N/A GO:0071949 ... A0A078L5T0 38493211
    888612 8twf:B (2.4) BS01 FAD N/A GO:0071949 ... A0A078L5T0 38493211
    888613 8twf:C (2.4) BS01 FAD N/A GO:0071949 ... A0A078L5T0 38493211
    888614 8twf:D (2.4) BS01 FAD N/A GO:0071949 ... A0A078L5T0 38493211
    888615 8twg:B (1.8) BS01 FAD N/A GO:0043731 ... A0A222NYA8 38493211
    888616 8twi:C (2.69) BS01 peptide 3.1.3.16 GO:0000159 ... P67775 38123684
    888617 8twi:C (2.69) BS02 FE 3.1.3.16 GO:0000159 ... P67775 38123684
    888618 8twi:C (2.69) BS03 ZN 3.1.3.16 GO:0000159 ... P67775 38123684
    888619 8twj:A (1.9) BS01 UDP ? GO:0005576 ... P13835 38354245
    888620 8twn:A (2.08) BS01 67I N/A N/A A0A861B387 39285206
    888621 8two:A (2.09) BS01 peptide ? GO:0005576 ... P13835 38354245
    888622 8two:A (2.09) BS02 UDP ? GO:0005576 ... P13835 38354245
    888623 8two:A (2.09) BS03 RAM ? GO:0005576 ... P13835 38354245
    888624 8tws:A (2.85) BS01 peptide ? GO:0005576 ... P13835 38354245
    888625 8tws:A (2.85) BS02 AWU ? GO:0005576 ... P13835 38354245
    888626 8twt:A (2.3) BS01 67I N/A N/A A0A861B387 39285206
    888627 8twt:A (2.3) BS02 FE N/A N/A A0A861B387 39285206
    888628 8twt:B (2.3) BS01 67I N/A N/A A0A861B387 39285206
    888629 8twt:B (2.3) BS02 FE N/A N/A A0A861B387 39285206
    888630 8twt:B (2.3) BS03 FE N/A N/A A0A861B387 39285206
    888631 8twu:A (1.84) BS01 HEM ? GO:0004497 ... A0ACD6BAV5 37611404
    888632 8twu:A (1.84) BS02 RQB ? GO:0004497 ... A0ACD6BAV5 37611404
    888633 8twu:A (1.84) BS03 RQB ? GO:0004497 ... A0ACD6BAV5 37611404
    888634 8twu:A (1.84) BS04 ZN ? GO:0004497 ... A0ACD6BAV5 37611404
    888635 8twv:A (3.4) BS01 3CN ? GO:0004888 ... E0SJQ4 38167383
    888636 8twv:B (3.4) BS01 3CN ? GO:0004888 ... E0SJQ4 38167383
    888637 8twv:C (3.4) BS01 3CN ? GO:0004888 ... E0SJQ4 38167383
    888638 8twv:D (3.4) BS01 3CN ? GO:0004888 ... E0SJQ4 38167383
    888639 8twv:E (3.4) BS01 3CN ? GO:0004888 ... E0SJQ4 38167383
    888640 8tww:A (2.0) BS01 67I N/A N/A A0A861B387 39285206
    888641 8tww:A (2.0) BS02 FE N/A N/A A0A861B387 39285206
    888642 8tww:A (2.0) BS03 FE N/A N/A A0A861B387 39285206
    888643 8tww:A (2.0) BS04 FE N/A N/A A0A861B387 39285206
    888644 8tww:B (2.0) BS01 67I N/A N/A A0A861B387 39285206
    888645 8tww:B (2.0) BS02 FE N/A N/A A0A861B387 39285206
    888646 8tww:B (2.0) BS03 FE N/A N/A A0A861B387 39285206
    888647 8twx:A (2.7) BS01 VI7 N/A GO:0003723 ... P09960 38704942
    888648 8twx:A (2.7) BS02 ZN N/A GO:0003723 ... P09960 38704942
    888649 8twx:B (2.7) BS01 VI7 N/A GO:0003723 ... P09960 38704942
    888650 8twx:B (2.7) BS02 ZN N/A GO:0003723 ... P09960 38704942
    888651 8twx:C (2.7) BS01 ZN N/A GO:0003723 ... P09960 38704942
    888652 8twy:A (2.67) BS01 RNX N/A GO:0016301 ... P42336 39568927
    888653 8twz:A (3.17) BS01 3CN ? GO:0004888 ... E0SJQ4 38167383
    888654 8twz:B (3.17) BS01 3CN ? GO:0004888 ... E0SJQ4 38167383
    888655 8twz:C (3.17) BS01 3CN ? GO:0004888 ... E0SJQ4 38167383
    888656 8twz:D (3.17) BS01 3CN ? GO:0004888 ... E0SJQ4 38167383
    888657 8twz:E (3.17) BS01 3CN ? GO:0004888 ... E0SJQ4 38167383
    888658 8tx0:A (2.0) BS01 VEU N/A GO:0000287 ... Q9NWZ3 38695469
    888659 8tx0:B (2.0) BS01 VEU N/A GO:0000287 ... Q9NWZ3 38695469
    888660 8tx4:A (1.9) BS01 dna N/A GO:0000932 ... Q7YR23 39389938
    888661 8tx4:A (1.9) BS02 ZN N/A GO:0000932 ... Q7YR23 39389938
    888662 8tx4:A (1.9) BS03 ZN N/A GO:0000932 ... Q7YR23 39389938
    888663 8tx5:A (1.93) BS01 CU N/A GO:0005576 ... P0CS93 N/A
    888664 8tx5:B (1.93) BS01 CU N/A GO:0005576 ... P0CS93 N/A
    888665 8tx5:C (1.93) BS01 CU N/A GO:0005576 ... P0CS93 N/A
    888666 8tx5:D (1.93) BS01 CU N/A GO:0005576 ... P0CS93 N/A
    888667 8tx6:A (1.56) BS01 CU N/A GO:0005576 ... P0CS93 N/A
    888668 8tx6:A (1.56) BS02 CA N/A GO:0005576 ... P0CS93 N/A
    888669 8tx8:A (2.2) BS01 peptide N/A GO:0000118 ... Q09028 39460621
    888670 8tx8:B (2.2) BS01 peptide N/A GO:0000118 ... Q09028 39460621
    888671 8tx9:A (2.01) BS01 BMX N/A GO:0003677 ... A0A064C3N8 N/A
    888672 8tx9:A (2.01) BS02 BMX N/A GO:0003677 ... A0A064C3N8 N/A
    888673 8tx9:B (2.01) BS01 BMX N/A GO:0003677 ... A0A064C3N8 N/A
    888674 8tx9:B (2.01) BS02 BMX N/A GO:0003677 ... A0A064C3N8 N/A
    888675 8tx9:B (2.01) BS03 BMX N/A GO:0003677 ... A0A064C3N8 N/A
    888676 8tx9:C (2.01) BS01 BMX N/A GO:0003677 ... A0A064C3N8 N/A
    888677 8tx9:C (2.01) BS02 BMX N/A GO:0003677 ... A0A064C3N8 N/A
    888678 8tx9:D (2.01) BS01 BMX N/A GO:0003677 ... A0A064C3N8 N/A
    888679 8tx9:D (2.01) BS02 BMX N/A GO:0003677 ... A0A064C3N8 N/A
    888680 8txe:A (1.35) BS01 GDP 3.6.5.2 GO:0003924 ... P01116 37849557
    888681 8txe:A (1.35) BS02 VM9 3.6.5.2 GO:0003924 ... P01116 37849557
    888682 8txe:B (1.35) BS01 GDP 3.6.5.2 GO:0003924 ... P01116 37849557
    888683 8txe:B (1.35) BS02 VM9 3.6.5.2 GO:0003924 ... P01116 37849557
    888684 8txf:A (1.29) BS01 peptide ? GO:0005576 ... P13835 38354245
    888685 8txg:A (1.5) BS01 GDP 3.6.5.2 GO:0003924 ... P01116 37849557
    888686 8txg:A (1.5) BS02 VQT 3.6.5.2 GO:0003924 ... P01116 37849557
    888687 8txh:A (1.2) BS01 GDP 3.6.5.2 GO:0003924 ... P01116 37849557
    888688 8txh:A (1.2) BS02 VR5 3.6.5.2 GO:0003924 ... P01116 37849557
    888689 8txh:B (1.2) BS01 GDP 3.6.5.2 GO:0003924 ... P01116 37849557
    888690 8txh:B (1.2) BS02 VR5 3.6.5.2 GO:0003924 ... P01116 37849557
    888691 8txj:A (1.4) BS01 GDP N/A GO:0003924 ... P01116 N/A
    888692 8txk:A (1.38) BS01 GDP N/A GO:0003924 ... P01116 N/A
    888693 8txm:A (3.25) BS01 MG N/A GO:0019031 ... C3W5S1 38935072
    888694 8txn:A (1.75) BS01 CL ? GO:0005201 ... P08120
    Q9VMV5
    37890775
    888695 8txn:A (1.75) BS02 CL ? GO:0005201 ... P08120
    Q9VMV5
    37890775
    888696 8txn:D (1.75) BS01 CL ? GO:0005201 ... P08120
    Q9VMV5
    37890775
    888697 8txn:D (1.75) BS02 CL ? GO:0005201 ... P08120
    Q9VMV5
    37890775
    888698 8txo:I (3.1) BS01 rna 2.7.7.6 GO:0000345 ... P0A8V2 38195598
    888699 8txo:I (3.1) BS02 dna 2.7.7.6 GO:0000345 ... P0A8V2 38195598
    888700 8txo:I (3.1) BS03 S9F 2.7.7.6 GO:0000345 ... P0A8V2 38195598
    888701 8txo:J (3.1) BS01 dna 2.7.7.6 GO:0000287 ... P0A8T7 38195598
    888702 8txo:J (3.1) BS02 dna 2.7.7.6 GO:0000287 ... P0A8T7 38195598
    888703 8txo:J (3.1) BS03 ZN 2.7.7.6 GO:0000287 ... P0A8T7 38195598
    888704 8txo:J (3.1) BS04 ZN 2.7.7.6 GO:0000287 ... P0A8T7 38195598
    888705 8txo:J (3.1) BS05 MG 2.7.7.6 GO:0000287 ... P0A8T7 38195598
    888706 8txo:J (3.1) BS06 S9F 2.7.7.6 GO:0000287 ... P0A8T7 38195598
    888707 8txv:A (3.8) BS01 dna ? GO:0000786 ... P68431 38242129
    888708 8txv:A (3.8) BS02 dna ? GO:0000786 ... P68431 38242129
    888709 8txv:B (3.8) BS01 dna ? GO:0000781 ... P62805 38242129
    888710 8txv:B (3.8) BS02 dna ? GO:0000781 ... P62805 38242129
    888711 8txv:C (3.8) BS01 dna ? GO:0000786 ... P04908 38242129
    888712 8txv:C (3.8) BS02 dna ? GO:0000786 ... P04908 38242129
    888713 8txv:D (3.8) BS01 dna ? GO:0000786 ... P62807 38242129
    888714 8txv:D (3.8) BS02 dna ? GO:0000786 ... P62807 38242129
    888715 8txv:E (3.8) BS01 dna ? GO:0000786 ... P68431 38242129
    888716 8txv:E (3.8) BS02 dna ? GO:0000786 ... P68431 38242129
    888717 8txv:F (3.8) BS01 dna ? GO:0000781 ... P62805 38242129
    888718 8txv:F (3.8) BS02 dna ? GO:0000781 ... P62805 38242129
    888719 8txv:G (3.8) BS01 dna ? GO:0000786 ... P04908 38242129
    888720 8txv:G (3.8) BS02 dna ? GO:0000786 ... P04908 38242129
    888721 8txv:G (3.8) BS03 peptide ? GO:0000786 ... P04908 38242129
    888722 8txv:H (3.8) BS01 dna ? GO:0000786 ... P62807 38242129
    888723 8txv:H (3.8) BS02 dna ? GO:0000786 ... P62807 38242129
    888724 8txv:H (3.8) BS03 peptide ? GO:0000786 ... P62807 38242129
    888725 8txw:A (3.6) BS01 dna ? GO:0000786 ... P68431 38242129
    888726 8txw:A (3.6) BS02 dna ? GO:0000786 ... P68431 38242129
    888727 8txw:B (3.6) BS01 dna ? GO:0000781 ... P62805 38242129
    888728 8txw:B (3.6) BS02 dna ? GO:0000781 ... P62805 38242129
    888729 8txw:C (3.6) BS01 dna ? GO:0000786 ... P04908 38242129
    888730 8txw:C (3.6) BS02 dna ? GO:0000786 ... P04908 38242129
    888731 8txw:D (3.6) BS01 dna ? GO:0000786 ... P62807 38242129
    888732 8txw:D (3.6) BS02 dna ? GO:0000786 ... P62807 38242129
    888733 8txw:E (3.6) BS01 dna ? GO:0000786 ... P68431 38242129
    888734 8txw:E (3.6) BS02 dna ? GO:0000786 ... P68431 38242129
    888735 8txw:F (3.6) BS01 dna ? GO:0000781 ... P62805 38242129
    888736 8txw:F (3.6) BS02 dna ? GO:0000781 ... P62805 38242129
    888737 8txw:G (3.6) BS01 dna ? GO:0000786 ... P04908 38242129
    888738 8txw:G (3.6) BS02 dna ? GO:0000786 ... P04908 38242129
    888739 8txw:G (3.6) BS03 peptide ? GO:0000786 ... P04908 38242129
    888740 8txw:H (3.6) BS01 dna ? GO:0000786 ... P62807 38242129
    888741 8txw:H (3.6) BS02 dna ? GO:0000786 ... P62807 38242129
    888742 8txw:H (3.6) BS03 peptide ? GO:0000786 ... P62807 38242129
    888743 8txw:M (3.6) BS01 peptide ? N/A P0CG47 38242129
    888744 8txx:A (3.7) BS01 dna ? GO:0000786 ... P68431 38242129
    888745 8txx:A (3.7) BS02 dna ? GO:0000786 ... P68431 38242129
    888746 8txx:B (3.7) BS01 dna ? GO:0000781 ... P62805 38242129
    888747 8txx:B (3.7) BS02 dna ? GO:0000781 ... P62805 38242129
    888748 8txx:C (3.7) BS01 dna ? GO:0000786 ... P04908 38242129
    888749 8txx:C (3.7) BS02 dna ? GO:0000786 ... P04908 38242129
    888750 8txx:D (3.7) BS01 dna ? GO:0000786 ... P62807 38242129
    888751 8txx:D (3.7) BS02 dna ? GO:0000786 ... P62807 38242129
    888752 8txx:E (3.7) BS01 dna ? GO:0000786 ... P68431 38242129
    888753 8txx:E (3.7) BS02 dna ? GO:0000786 ... P68431 38242129
    888754 8txx:F (3.7) BS01 dna ? GO:0000781 ... P62805 38242129
    888755 8txx:F (3.7) BS02 dna ? GO:0000781 ... P62805 38242129
    888756 8txx:G (3.7) BS01 dna ? GO:0000786 ... P04908 38242129
    888757 8txx:G (3.7) BS02 dna ? GO:0000786 ... P04908 38242129
    888758 8txx:H (3.7) BS01 dna ? GO:0000786 ... P62807 38242129
    888759 8txx:H (3.7) BS02 dna ? GO:0000786 ... P62807 38242129
    888760 8txx:K (3.7) BS01 dna 2.3.2.27 GO:0000151 ... Q8IYW5 38242129
    888761 8txy:A (2.1) BS01 SJ0 2.7.11.1
    2.7.11.26
    GO:0004672 ... Q7KZI7 38147543
    888762 8txy:B (2.1) BS01 SJ0 2.7.11.1
    2.7.11.26
    GO:0004672 ... Q7KZI7 38147543
    888763 8txz:A (3.05) BS01 A1N 2.7.11.1
    3.6.5.-
    GO:0004672 ... Q5S007 38039358
    888764 8txz:A (3.05) BS02 GDP 2.7.11.1
    3.6.5.-
    GO:0004672 ... Q5S007 38039358
    888765 8ty0:A (1.54) BS01 SIK N/A GO:0005576 ... P22629 N/A
    888766 8ty0:B (1.54) BS01 SIK N/A GO:0005576 ... P22629 N/A
    888767 8ty0:C (1.54) BS01 SIK N/A GO:0005576 ... P22629 N/A
    888768 8ty0:D (1.54) BS01 SIK N/A GO:0005576 ... P22629 N/A
    888769 8ty2:A (1.41) BS01 GDP N/A GO:0003924 ... P01116 N/A
    888770 8ty3:A (1.85) BS01 SJF N/A GO:0008233 ... P0DTD1 N/A
    888771 8ty4:A (1.85) BS01 SO0 N/A GO:0008233 ... P0DTD1 N/A
    888772 8ty5:A (1.85) BS01 SQ3 N/A GO:0008233 ... P0DTD1 N/A
    888773 8ty8:A (1.4) BS01 GDP N/A GO:0003924 ... P01116 N/A
    888774 8ty9:A (1.43) BS01 GDP N/A GO:0003924 ... P01116 N/A
    888775 8tyc:A (3.3) BS01 MAN N/A GO:0019031 ... P08669 39243373
    888776 8tyc:B (3.3) BS01 MAN N/A GO:0019031 ... P08669 39243373
    888777 8tyc:C (3.3) BS01 MAN N/A GO:0019031 ... P08669 39243373
    888778 8tyc:b (3.3) BS01 BMA N/A GO:0008674 ... P08669
    Q9WXS1
    39243373
    888779 8tye:A (3.8) BS01 FUC N/A GO:0019031 ... P08669 39243373
    888780 8tye:A (3.8) BS02 MAN N/A GO:0019031 ... P08669 39243373
    888781 8tye:L (3.8) BS01 MAN N/A N/A N/A 39243373
    888782 8tyf:A (2.59) BS01 T0F N/A GO:0004190 ... A5K302 40035447
    888783 8tyg:A (1.64) BS01 SKC N/A GO:0004190 ... A5K302 40035447
    888784 8tyg:A (1.64) BS02 TEW N/A GO:0004190 ... A5K302 40035447
    888785 8tyh:A (1.83) BS01 TEW N/A GO:0004190 ... A5KAC3 40035447
    888786 8tyj:A (1.9) BS01 SAH 2.1.1.56
    2.1.1.57
    2.7.7.48
    2.7.7.50
    3.1.13.-
    3.4.19.12
    3.4.22.-
    3.4.22.69
    3.6.4.12
    3.6.4.13
    4.6.1.-
    N/A P0DTD1 N/A
    888787 8tyj:B (1.9) BS01 ZN 2.1.1.56
    2.1.1.57
    2.7.7.48
    2.7.7.50
    3.1.13.-
    3.4.19.12
    3.4.22.-
    3.4.22.69
    3.6.4.12
    3.6.4.13
    4.6.1.-
    GO:0003723 ... P0DTD1 N/A
    888788 8tyj:B (1.9) BS02 ZN 2.1.1.56
    2.1.1.57
    2.7.7.48
    2.7.7.50
    3.1.13.-
    3.4.19.12
    3.4.22.-
    3.4.22.69
    3.6.4.12
    3.6.4.13
    4.6.1.-
    GO:0003723 ... P0DTD1 N/A
    888789 8tym:B (3.58) BS01 GDP 3.6.5.5 GO:0003924 ... Q05193 38663399
    888790 8tym:B (3.58) BS02 MG 3.6.5.5 GO:0003924 ... Q05193 38663399
    888791 8tym:C (3.58) BS01 GDP 3.6.5.5 GO:0003924 ... Q05193 38663399
    888792 8tym:C (3.58) BS02 MG 3.6.5.5 GO:0003924 ... Q05193 38663399
    888793 8tym:c (3.58) BS01 GDP 3.6.5.5 GO:0003924 ... Q05193 38663399
    888794 8tym:c (3.58) BS02 MG 3.6.5.5 GO:0003924 ... Q05193 38663399
    888795 8tym:f (3.58) BS01 GDP 3.6.5.5 GO:0003924 ... Q05193 38663399
    888796 8tym:f (3.58) BS02 MG 3.6.5.5 GO:0003924 ... Q05193 38663399
    888797 8tyn:C (3.26) BS01 GDP 3.6.5.5 GO:0003924 ... Q05193 38663399
    888798 8tyn:C (3.26) BS02 MG 3.6.5.5 GO:0003924 ... Q05193 38663399
    888799 8tyn:F (3.26) BS01 GDP 3.6.5.5 GO:0003924 ... Q05193 38663399
    888800 8tyn:F (3.26) BS02 MG 3.6.5.5 GO:0003924 ... Q05193 38663399

    Reference:
  • Chengxin Zhang, Xi Zhang, Lydia Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).