SEQ2FUN

BioLiP
Download all results in tab-seperated text for 1072681 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
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  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
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    # PDB
    (Resolution Å)
    Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    889201 8u3k:A (2.5) BS01 dna N/A N/A Q9KR72 38740055
    889202 8u3k:E (2.5) BS01 dna N/A N/A Q9KR73 38740055
    889203 8u3k:E (2.5) BS02 dna N/A N/A Q9KR73 38740055
    889204 8u3k:F (2.5) BS01 dna N/A N/A Q9KR72 38740055
    889205 8u3n:A (2.15) BS01 HEM 1.14.-.- GO:0004497 ... A0ACD6BAH8 N/A
    889206 8u3n:A (2.15) BS02 BGC 1.14.-.- GO:0004497 ... A0ACD6BAH8 N/A
    889207 8u3n:B (2.15) BS01 HEM 1.14.-.- GO:0004497 ... A0ACD6BAH8 N/A
    889208 8u3n:B (2.15) BS02 BGC 1.14.-.- GO:0004497 ... A0ACD6BAH8 N/A
    889209 8u3n:C (2.15) BS01 HEM 1.14.-.- GO:0004497 ... A0ACD6BAH8 N/A
    889210 8u3n:C (2.15) BS02 BGC 1.14.-.- GO:0004497 ... A0ACD6BAH8 N/A
    889211 8u3o:A (1.88) BS01 O69 N/A GO:0008233 ... A0A7U3H5H9 N/A
    889212 8u3o:B (1.88) BS01 O69 N/A GO:0008233 ... A0A7U3H5H9 N/A
    889213 8u3p:A (1.79) BS01 HEM N/A GO:0004096 ... P9WIE5 39300819
    889214 8u3p:B (1.79) BS01 HEM N/A GO:0004096 ... P9WIE5 39300819
    889215 8u3p:C (1.79) BS01 HEM N/A GO:0004096 ... P9WIE5 39300819
    889216 8u3p:D (1.79) BS01 HEM N/A GO:0004096 ... P9WIE5 39300819
    889217 8u3y:A (3.1) BS01 rna 3.1.-.- GO:0003676 ... Q99ZW2 38688943
    889218 8u3y:A (3.1) BS02 dna 3.1.-.- GO:0003676 ... Q99ZW2 38688943
    889219 8u3y:A (3.1) BS03 dna 3.1.-.- GO:0003676 ... Q99ZW2 38688943
    889220 8u3y:A (3.1) BS04 dna 3.1.-.- GO:0003676 ... Q99ZW2 38688943
    889221 8u3y:A (3.1) BS05 MG 3.1.-.- GO:0003676 ... Q99ZW2 38688943
    889222 8u3y:A (3.1) BS06 MG 3.1.-.- GO:0003676 ... Q99ZW2 38688943
    889223 8u3y:A (3.1) BS07 MG 3.1.-.- GO:0003676 ... Q99ZW2 38688943
    889224 8u3z:A (3.6) BS01 GTP 3.6.5.- GO:0000226 ... P68363 38658656
    889225 8u3z:A (3.6) BS02 MG 3.6.5.- GO:0000226 ... P68363 38658656
    889226 8u3z:B (3.6) BS01 G2P ? GO:0000226 ... P07437 38658656
    889227 8u3z:E (3.6) BS01 G2P ? GO:0000226 ... P07437 38658656
    889228 8u3z:E (3.6) BS02 MG ? GO:0000226 ... P07437 38658656
    889229 8u3z:F (3.6) BS01 GTP 3.6.5.- GO:0000226 ... P68363 38658656
    889230 8u3z:N (3.6) BS01 ATP 6.3.2.- GO:0001578 ... A4Q9E8 38658656
    889231 8u40:A (2.2) BS01 V8X N/A GO:0008233 ... P0DTD1 N/A
    889232 8u40:B (2.2) BS01 V8X N/A GO:0008233 ... P0DTD1 N/A
    889233 8u41:A (2.72) BS01 FE N/A N/A A0A9X4Y9G9 39143299
    889234 8u41:A (2.72) BS02 HIS N/A N/A A0A9X4Y9G9 39143299
    889235 8u41:B (2.72) BS01 FE N/A N/A A0A9X4Y9G9 39143299
    889236 8u41:B (2.72) BS02 HIS N/A N/A A0A9X4Y9G9 39143299
    889237 8u42:A (2.0) BS01 FE N/A N/A A0A9X4Y9G9 39143299
    889238 8u42:B (2.0) BS01 FE N/A N/A A0A9X4Y9G9 39143299
    889239 8u43:A (2.4) BS01 V5H ? GO:0005216 ... O35433 38698206
    889240 8u43:B (2.4) BS01 V5H ? GO:0005216 ... O35433 38698206
    889241 8u43:C (2.4) BS01 V5H ? GO:0005216 ... O35433 38698206
    889242 8u43:D (2.4) BS01 V5H ? GO:0005216 ... O35433 38698206
    889243 8u45:C (2.1) BS01 CA 3.4.21.63 GO:0004252 ... P28296 37864071
    889244 8u48:A (1.9) BS01 BMA ? GO:0005975 ... Q8A889 38879612
    889245 8u48:A (1.9) BS02 MAN ? GO:0005975 ... Q8A889 38879612
    889246 8u48:A (1.9) BS03 MAN ? GO:0005975 ... Q8A889 38879612
    889247 8u48:A (1.9) BS04 MAN ? GO:0005975 ... Q8A889 38879612
    889248 8u48:A (1.9) BS05 MAN ? GO:0005975 ... Q8A889 38879612
    889249 8u48:A (1.9) BS06 MAN ? GO:0005975 ... Q8A889 38879612
    889250 8u48:B (1.9) BS01 BMA ? GO:0005975 ... Q8A889 38879612
    889251 8u48:B (1.9) BS02 MAN ? GO:0005975 ... Q8A889 38879612
    889252 8u48:B (1.9) BS03 MAN ? GO:0005975 ... Q8A889 38879612
    889253 8u48:B (1.9) BS04 MAN ? GO:0005975 ... Q8A889 38879612
    889254 8u48:B (1.9) BS05 MAN ? GO:0005975 ... Q8A889 38879612
    889255 8u48:B (1.9) BS06 MAN ? GO:0005975 ... Q8A889 38879612
    889256 8u49:A (1.8) BS01 CA 3.2.1.4 GO:0004553 ... Q65JI9 38286536
    889257 8u49:A (1.8) BS02 CA 3.2.1.4 GO:0004553 ... Q65JI9 38286536
    889258 8u4a:A (1.97) BS01 BGC 3.2.1.4 GO:0004553 ... Q65JI9 38286536
    889259 8u4a:A (1.97) BS02 BGC 3.2.1.4 GO:0004553 ... Q65JI9 38286536
    889260 8u4a:A (1.97) BS03 CA 3.2.1.4 GO:0004553 ... Q65JI9 38286536
    889261 8u4a:A (1.97) BS04 CA 3.2.1.4 GO:0004553 ... Q65JI9 38286536
    889262 8u4d:A (2.2) BS01 VPN ? GO:0005216 ... O35433 38698206
    889263 8u4d:A (2.2) BS02 VPN ? GO:0005216 ... O35433 38698206
    889264 8u4d:B (2.2) BS01 VPN ? GO:0005216 ... O35433 38698206
    889265 8u4d:B (2.2) BS02 VPN ? GO:0005216 ... O35433 38698206
    889266 8u4d:C (2.2) BS01 VPN ? GO:0005216 ... O35433 38698206
    889267 8u4d:C (2.2) BS02 VPN ? GO:0005216 ... O35433 38698206
    889268 8u4d:D (2.2) BS01 VPN ? GO:0005216 ... O35433 38698206
    889269 8u4d:D (2.2) BS02 VPN ? GO:0005216 ... O35433 38698206
    889270 8u4f:A (2.01) BS01 BGC 3.2.1.4 GO:0004553 ... Q65JI9 38286536
    889271 8u4f:A (2.01) BS02 BGC 3.2.1.4 GO:0004553 ... Q65JI9 38286536
    889272 8u4f:A (2.01) BS03 BGC 3.2.1.4 GO:0004553 ... Q65JI9 38286536
    889273 8u4f:A (2.01) BS04 BGC 3.2.1.4 GO:0004553 ... Q65JI9 38286536
    889274 8u4f:A (2.01) BS05 CA 3.2.1.4 GO:0004553 ... Q65JI9 38286536
    889275 8u4f:A (2.01) BS06 CA 3.2.1.4 GO:0004553 ... Q65JI9 38286536
    889276 8u4j:B (3.7) BS01 MAN 2.7.10.1 N/A Q15303 38498590
    889277 8u4n:R (2.72) BS01 CLR ? GO:0001618 ... P42212
    P61073
    39313635
    889278 8u4o:R (3.29) BS01 CLR ? GO:0001618 ... P42212
    P61073
    39313635
    889279 8u4p:R (3.15) BS01 CLR ? GO:0001618 ... P42212
    P61073
    39313635
    889280 8u4p:R (3.15) BS02 VH6 ? GO:0001618 ... P42212
    P61073
    39313635
    889281 8u4q:R (3.36) BS01 CLR ? GO:0001618 ... P42212
    P61073
    39313635
    889282 8u4r:R (3.1) BS01 CLR ? GO:0001618 ... P42212
    P61073
    39313635
    889283 8u4s:C (3.35) BS01 CLR ? GO:0001618 ... P42212
    P61073
    39313635
    889284 8u4s:C (3.35) BS02 D21 ? GO:0001618 ... P42212
    P61073
    39313635
    889285 8u4s:C (3.35) BS03 CLR ? GO:0001618 ... P42212
    P61073
    39313635
    889286 8u4s:C (3.35) BS04 D21 ? GO:0001618 ... P42212
    P61073
    39313635
    889287 8u4s:G (3.35) BS01 D21 ? GO:0001618 ... P42212
    P61073
    39313635
    889288 8u4s:G (3.35) BS02 CLR ? GO:0001618 ... P42212
    P61073
    39313635
    889289 8u4s:G (3.35) BS03 D21 ? GO:0001618 ... P42212
    P61073
    39313635
    889290 8u4s:G (3.35) BS04 CLR ? GO:0001618 ... P42212
    P61073
    39313635
    889291 8u4s:R (3.35) BS01 CLR ? GO:0001618 ... P42212
    P61073
    39313635
    889292 8u4s:R (3.35) BS02 D21 ? GO:0001618 ... P42212
    P61073
    39313635
    889293 8u4s:R (3.35) BS03 CLR ? GO:0001618 ... P42212
    P61073
    39313635
    889294 8u4s:R (3.35) BS04 D21 ? GO:0001618 ... P42212
    P61073
    39313635
    889295 8u4t:AA (3.38) BS01 CLR ? GO:0001618 ... P61073 39313635
    889296 8u4t:AA (3.38) BS02 D21 ? GO:0001618 ... P61073 39313635
    889297 8u4t:AA (3.38) BS03 CLR ? GO:0001618 ... P61073 39313635
    889298 8u4t:I (3.38) BS01 CLR ? GO:0001618 ... P61073 39313635
    889299 8u4t:I (3.38) BS02 D21 ? GO:0001618 ... P61073 39313635
    889300 8u4t:I (3.38) BS03 CLR ? GO:0001618 ... P61073 39313635
    889301 8u4t:Q (3.38) BS01 CLR ? GO:0001618 ... P61073 39313635
    889302 8u4t:Q (3.38) BS02 D21 ? GO:0001618 ... P61073 39313635
    889303 8u4t:Q (3.38) BS03 CLR ? GO:0001618 ... P61073 39313635
    889304 8u4t:R (3.38) BS01 CLR ? GO:0001618 ... P61073 39313635
    889305 8u4t:R (3.38) BS02 D21 ? GO:0001618 ... P61073 39313635
    889306 8u4t:R (3.38) BS03 CLR ? GO:0001618 ... P61073 39313635
    889307 8u4v:A (2.99) BS01 AV0 ? GO:0004888 ... O14493 38886509
    889308 8u4v:H (2.99) BS01 AV0 N/A N/A N/A 38886509
    889309 8u4w:A (3.02) BS01 VHU 2.4.2.-
    2.4.2.30
    GO:0003950 ... P09874 38482564
    889310 8u4w:B (3.02) BS01 VHU 2.4.2.-
    2.4.2.30
    GO:0003950 ... P09874 38482564
    889311 8u4w:C (3.02) BS01 VHU 2.4.2.-
    2.4.2.30
    GO:0003950 ... P09874 38482564
    889312 8u4w:D (3.02) BS01 VHU 2.4.2.-
    2.4.2.30
    GO:0003950 ... P09874 38482564
    889313 8u4x:A (2.81) BS01 LBV N/A GO:0000155 ... Q885D3 39127720
    889314 8u4x:B (2.81) BS01 LBV N/A GO:0000155 ... Q885D3 39127720
    889315 8u4z:A (2.39) BS01 MH0 N/A GO:0004601 ... A0AAT8XUH8 38519509
    889316 8u51:A (2.41) BS01 peptide N/A GO:0140737 ... A0AAT8XUH9 38519509
    889317 8u52:A (1.5) BS01 1W4 N/A GO:0001523 ... P02766 39843982
    889318 8u52:B (1.5) BS01 1W4 N/A GO:0001523 ... P02766 39843982
    889319 8u53:A (2.6) BS01 CPL ? GO:0000325 ... Q9C8G5 38592763
    889320 8u53:A (2.6) BS02 82T ? GO:0000325 ... Q9C8G5 38592763
    889321 8u53:B (2.6) BS01 CPL ? GO:0000325 ... Q9C8G5 38592763
    889322 8u53:B (2.6) BS02 82T ? GO:0000325 ... Q9C8G5 38592763
    889323 8u56:A (2.75) BS01 LMN N/A GO:0005765 ... Q7Z3F1 39358511
    889324 8u56:A (2.75) BS02 Y01 N/A GO:0005765 ... Q7Z3F1 39358511
    889325 8u56:B (2.75) BS01 LMN N/A GO:0005765 ... Q7Z3F1 39358511
    889326 8u56:B (2.75) BS02 Y01 N/A GO:0005765 ... Q7Z3F1 39358511
    889327 8u57:A (2.0) BS01 8PF N/A GO:0003677 ... P37231 38494006
    889328 8u57:A (2.0) BS02 8PF N/A GO:0003677 ... P37231 38494006
    889329 8u57:A (2.0) BS03 8PF N/A GO:0003677 ... P37231 38494006
    889330 8u57:A (2.0) BS04 8PF N/A GO:0003677 ... P37231 38494006
    889331 8u59:A (1.77) BS01 5V9 N/A GO:0003756 ... P0AEG4 N/A
    889332 8u59:B (1.77) BS01 SW0 N/A GO:0003756 ... P0AEG4 N/A
    889333 8u5a:A (2.0) BS01 HEM N/A GO:0015671 ... N/A 38194293
    889334 8u5a:B (2.0) BS01 HEM N/A GO:0015671 ... N/A 38194293
    889335 8u5b:A (5.3) BS01 AV0 ? GO:0004888 ... O14493 38886509
    889336 8u5b:H (5.3) BS01 AV0 N/A N/A N/A 38886509
    889337 8u5c:E (2.68) BS01 Y01 N/A GO:0005765 ... Q7Z3F1 39358511
    889338 8u5c:E (2.68) BS02 Y01 N/A GO:0005765 ... Q7Z3F1 39358511
    889339 8u5c:F (2.68) BS01 Y01 N/A GO:0005765 ... Q7Z3F1 39358511
    889340 8u5c:F (2.68) BS02 Y01 N/A GO:0005765 ... Q7Z3F1 39358511
    889341 8u5g:A (3.2) BS01 peptide 3.1.3.16 GO:0016787 ... P62136 38042495
    889342 8u5g:A (3.2) BS02 FE 3.1.3.16 GO:0016787 ... P62136 38042495
    889343 8u5h:I (3.23) BS01 dna ? GO:0000776 ... P02302 39043678
    889344 8u5h:I (3.23) BS02 dna ? GO:0000776 ... P02302 39043678
    889345 8u5h:J (3.23) BS01 dna ? GO:0000786 ... P62799 39043678
    889346 8u5h:J (3.23) BS02 dna ? GO:0000786 ... P62799 39043678
    889347 8u5h:K (3.23) BS01 peptide ? GO:0000786 ... P06897 39043678
    889348 8u5h:K (3.23) BS02 dna ? GO:0000786 ... P06897 39043678
    889349 8u5h:K (3.23) BS03 dna ? GO:0000786 ... P06897 39043678
    889350 8u5h:M (3.23) BS01 peptide ? GO:0000786 ... P02281 39043678
    889351 8u5h:M (3.23) BS02 dna ? GO:0000786 ... P02281 39043678
    889352 8u5h:M (3.23) BS03 dna ? GO:0000786 ... P02281 39043678
    889353 8u5h:O (3.23) BS01 peptide ? GO:0000776 ... P02302 39043678
    889354 8u5h:O (3.23) BS02 dna ? GO:0000776 ... P02302 39043678
    889355 8u5h:O (3.23) BS03 dna ? GO:0000776 ... P02302 39043678
    889356 8u5h:Q (3.23) BS01 dna ? GO:0000786 ... P62799 39043678
    889357 8u5h:Q (3.23) BS02 dna ? GO:0000786 ... P62799 39043678
    889358 8u5h:R (3.23) BS01 dna ? GO:0000786 ... P06897 39043678
    889359 8u5h:R (3.23) BS02 dna ? GO:0000786 ... P06897 39043678
    889360 8u5h:S (3.23) BS01 dna ? GO:0000786 ... P02281 39043678
    889361 8u5h:S (3.23) BS02 dna ? GO:0000786 ... P02281 39043678
    889362 8u5i:A (2.17) BS01 HEM N/A GO:0004833 ... P14902 N/A
    889363 8u5i:A (2.17) BS02 W2Z N/A GO:0004833 ... P14902 N/A
    889364 8u5i:B (2.17) BS01 HEM N/A GO:0004833 ... P14902 N/A
    889365 8u5i:B (2.17) BS02 W2Z N/A GO:0004833 ... P14902 N/A
    889366 8u5m:A (2.46) BS01 VJX 3.1.3.48 N/A Q8TF42 38252624
    889367 8u5m:C (2.46) BS01 VJX 3.1.3.48 N/A Q8TF42 38252624
    889368 8u5m:D (2.46) BS01 VJX 3.1.3.48 N/A Q8TF42 38252624
    889369 8u5n:A (3.0) BS01 IAC N/A GO:0005765 ... Q7Z3F1 39358511
    889370 8u5o:A (1.5) BS01 NGC N/A GO:0004308 ... N/A 39251137
    889371 8u5o:A (1.5) BS02 CA N/A GO:0004308 ... N/A 39251137
    889372 8u5o:A (1.5) BS03 CA N/A GO:0004308 ... N/A 39251137
    889373 8u5q:A (2.4) BS01 IAC N/A GO:0005765 ... Q7Z3F1 39358511
    889374 8u5q:C (2.4) BS01 IAC N/A GO:0005765 ... Q7Z3F1 39358511
    889375 8u5v:A (2.77) BS01 IAC N/A GO:0005765 ... Q7Z3F1 39358511
    889376 8u5v:A (2.77) BS02 Y01 N/A GO:0005765 ... Q7Z3F1 39358511
    889377 8u5x:A (2.79) BS01 IAC N/A GO:0005765 ... Q7Z3F1 39358511
    889378 8u5y:A (3.01) BS01 dna ? GO:0003697 ... Q6NSI4 37786681
    889379 8u5y:B (3.01) BS01 dna ? GO:0003697 ... Q6NSI4 37786681
    889380 8u5y:C (3.01) BS01 dna ? GO:0003697 ... Q6NSI4 37786681
    889381 8u61:A (4.0) BS01 dna ? GO:0003697 ... Q6NSI4 38466836
    889382 8u61:B (4.0) BS01 dna ? GO:0003697 ... Q6NSI4 38466836
    889383 8u61:C (4.0) BS01 dna ? GO:0003697 ... Q6NSI4 38466836
    889384 8u62:A (3.3) BS01 LBV N/A GO:0000155 ... Q885D3 39127720
    889385 8u62:B (3.3) BS01 LBV N/A GO:0000155 ... Q885D3 39127720
    889386 8u63:A (3.01) BS01 LBV N/A GO:0000155 ... Q885D3 39127720
    889387 8u63:B (3.01) BS01 LBV N/A GO:0000155 ... Q885D3 39127720
    889388 8u64:A (3.13) BS01 LBV N/A GO:0000155 ... Q885D3 39127720
    889389 8u64:B (3.13) BS01 LBV N/A GO:0000155 ... Q885D3 39127720
    889390 8u65:A (3.01) BS01 LBV N/A GO:0000155 ... Q885D3 39127720
    889391 8u65:B (3.01) BS01 LBV N/A GO:0000155 ... Q885D3 39127720
    889392 8u66:A (2.21) BS01 MG N/A GO:0000287 ... A0AAJ6N6K7 37979578
    889393 8u66:A (2.21) BS02 CAP N/A GO:0000287 ... A0AAJ6N6K7 37979578
    889394 8u66:A (2.21) BS03 CAP N/A GO:0000287 ... A0AAJ6N6K7 37979578
    889395 8u66:B (2.21) BS01 CAP N/A GO:0000287 ... A0AAJ6N6K7 37979578
    889396 8u66:B (2.21) BS02 MG N/A GO:0000287 ... A0AAJ6N6K7 37979578
    889397 8u66:B (2.21) BS03 CAP N/A GO:0000287 ... A0AAJ6N6K7 37979578
    889398 8u66:C (2.21) BS01 MG N/A GO:0000287 ... A0AAJ6N6K7 37979578
    889399 8u66:C (2.21) BS02 CAP N/A GO:0000287 ... A0AAJ6N6K7 37979578
    889400 8u66:C (2.21) BS03 CAP N/A GO:0000287 ... A0AAJ6N6K7 37979578

    Reference:
  • Chengxin Zhang, Xi Zhang, Lydia Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).