SEQ2FUN

BioLiP
Download all results in tab-seperated text for 942758 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
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  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.
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    # PDB
    (Resolution Å)
    Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    890401 8v1r:A (2.9) BS03 MG N/A GO:0000166 ... H9E937 39197451
    890402 8v1r:A (2.9) BS04 MG N/A GO:0000166 ... H9E937 39197451
    890403 8v1r:A (2.9) BS05 MG N/A GO:0000166 ... H9E937 39197451
    890404 8v1r:A (2.9) BS06 MG N/A GO:0000166 ... H9E937 39197451
    890405 8v1r:A (2.9) BS07 TTP N/A GO:0000166 ... H9E937 39197451
    890406 8v1r:B (2.9) BS01 dna N/A GO:0003677 ... H9E949 39197451
    890407 8v1s:A (3.26) BS01 dna N/A GO:0000166 ... H9E937 39197451
    890408 8v1s:A (3.26) BS02 dna N/A GO:0000166 ... H9E937 39197451
    890409 8v1s:A (3.26) BS03 MG N/A GO:0000166 ... H9E937 39197451
    890410 8v1s:B (3.26) BS01 dna N/A GO:0003677 ... H9E949 39197451
    890411 8v1t:A (2.8) BS01 dna N/A GO:0000166 ... H9E937 39197451
    890412 8v1t:A (2.8) BS02 dna N/A GO:0000166 ... H9E937 39197451
    890413 8v1t:A (2.8) BS03 MG N/A GO:0000166 ... H9E937 39197451
    890414 8v1t:A (2.8) BS04 MG N/A GO:0000166 ... H9E937 39197451
    890415 8v1t:A (2.8) BS05 MG N/A GO:0000166 ... H9E937 39197451
    890416 8v1t:A (2.8) BS06 MG N/A GO:0000166 ... H9E937 39197451
    890417 8v1t:A (2.8) BS07 AVP N/A GO:0000166 ... H9E937 39197451
    890418 8v1t:B (2.8) BS01 dna N/A GO:0003677 ... H9E949 39197451
    890419 8v1t:B (2.8) BS02 dna N/A GO:0003677 ... H9E949 39197451
    890420 8v1x:A (1.84) BS01 NDP N/A N/A Q9EX54 N/A
    890421 8v1x:B (1.84) BS01 NDP N/A N/A Q9EX54 N/A
    890422 8v1y:C (2.7) BS01 AMP N/A GO:0000166 ... P0ACE7 N/A
    890423 8v1y:D (2.7) BS01 AMP N/A GO:0000166 ... P0ACE7 N/A
    890424 8v22:A (2.2) BS01 MN N/A GO:0004356 ... P0A9C5 N/A
    890425 8v22:B (2.2) BS01 MN N/A GO:0004356 ... P0A9C5 N/A
    890426 8v22:C (2.2) BS01 MN N/A GO:0004356 ... P0A9C5 N/A
    890427 8v22:D (2.2) BS01 MN N/A GO:0004356 ... P0A9C5 N/A
    890428 8v22:E (2.2) BS01 MN N/A GO:0004356 ... P0A9C5 N/A
    890429 8v22:F (2.2) BS01 MN N/A GO:0004356 ... P0A9C5 N/A
    890430 8v22:G (2.2) BS01 MN N/A GO:0004356 ... P0A9C5 N/A
    890431 8v22:H (2.2) BS01 MN N/A GO:0004356 ... P0A9C5 N/A
    890432 8v22:I (2.2) BS01 MN N/A GO:0004356 ... P0A9C5 N/A
    890433 8v22:J (2.2) BS01 MN N/A GO:0004356 ... P0A9C5 N/A
    890434 8v22:K (2.2) BS01 MN N/A GO:0004356 ... P0A9C5 N/A
    890435 8v22:L (2.2) BS01 MN N/A GO:0004356 ... P0A9C5 N/A
    890436 8v24:A (3.6) BS01 ZN ? GO:0005506 ... P0AB59 38635633
    890437 8v24:B (3.6) BS01 24G 3.5.1.108 GO:0006796 ... P0A726 38635633
    890438 8v24:B (3.6) BS02 ZN 3.5.1.108 GO:0006796 ... P0A726 38635633
    890439 8v24:C (3.6) BS01 ZN ? GO:0005506 ... P0AB59 38635633
    890440 8v24:D (3.6) BS01 24G 3.5.1.108 GO:0006796 ... P0A726 38635633
    890441 8v24:D (3.6) BS02 ZN 3.5.1.108 GO:0006796 ... P0A726 38635633
    890442 8v25:A (3.32) BS01 dna N/A GO:0000786 ... P84233 39149911
    890443 8v25:A (3.32) BS02 dna N/A GO:0000786 ... P84233 39149911
    890444 8v25:B (3.32) BS01 dna N/A GO:0000786 ... P62799 39149911
    890445 8v25:C (3.32) BS01 dna N/A GO:0000786 ... P06897 39149911
    890446 8v25:C (3.32) BS02 dna N/A GO:0000786 ... P06897 39149911
    890447 8v25:D (3.32) BS01 dna N/A GO:0000786 ... P02281 39149911
    890448 8v25:D (3.32) BS02 dna N/A GO:0000786 ... P02281 39149911
    890449 8v25:E (3.32) BS01 dna N/A GO:0000786 ... P84233 39149911
    890450 8v25:E (3.32) BS02 dna N/A GO:0000786 ... P84233 39149911
    890451 8v25:F (3.32) BS01 dna N/A GO:0000786 ... P62799 39149911
    890452 8v25:G (3.32) BS01 dna N/A GO:0000786 ... P06897 39149911
    890453 8v25:G (3.32) BS02 dna N/A GO:0000786 ... P06897 39149911
    890454 8v25:H (3.32) BS01 dna N/A GO:0000786 ... P02281 39149911
    890455 8v25:H (3.32) BS02 dna N/A GO:0000786 ... P02281 39149911
    890456 8v26:A (3.33) BS01 dna N/A GO:0000786 ... P84233 39149911
    890457 8v26:A (3.33) BS02 dna N/A GO:0000786 ... P84233 39149911
    890458 8v26:B (3.33) BS01 dna N/A GO:0000786 ... P62799 39149911
    890459 8v26:C (3.33) BS01 dna N/A GO:0000786 ... P06897 39149911
    890460 8v26:C (3.33) BS02 dna N/A GO:0000786 ... P06897 39149911
    890461 8v26:D (3.33) BS01 dna N/A GO:0000786 ... P02281 39149911
    890462 8v26:E (3.33) BS01 dna N/A GO:0000786 ... P84233 39149911
    890463 8v26:E (3.33) BS02 dna N/A GO:0000786 ... P84233 39149911
    890464 8v26:F (3.33) BS01 dna N/A GO:0000786 ... P62799 39149911
    890465 8v26:G (3.33) BS01 dna N/A GO:0000786 ... P06897 39149911
    890466 8v26:H (3.33) BS01 dna N/A GO:0000786 ... P02281 39149911
    890467 8v26:H (3.33) BS02 dna N/A GO:0000786 ... P02281 39149911
    890468 8v27:A (3.34) BS01 dna N/A GO:0000786 ... P84233 39149911
    890469 8v27:A (3.34) BS02 dna N/A GO:0000786 ... P84233 39149911
    890470 8v27:B (3.34) BS01 dna N/A GO:0000786 ... P62799 39149911
    890471 8v27:C (3.34) BS01 dna N/A GO:0000786 ... P06897 39149911
    890472 8v27:C (3.34) BS02 dna N/A GO:0000786 ... P06897 39149911
    890473 8v27:D (3.34) BS01 dna N/A GO:0000786 ... P02281 39149911
    890474 8v27:D (3.34) BS02 dna N/A GO:0000786 ... P02281 39149911
    890475 8v27:E (3.34) BS01 dna N/A GO:0000786 ... P84233 39149911
    890476 8v27:E (3.34) BS02 dna N/A GO:0000786 ... P84233 39149911
    890477 8v27:F (3.34) BS01 dna N/A GO:0000786 ... P62799 39149911
    890478 8v27:F (3.34) BS02 dna N/A GO:0000786 ... P62799 39149911
    890479 8v27:G (3.34) BS01 dna N/A GO:0000786 ... P06897 39149911
    890480 8v27:G (3.34) BS02 dna N/A GO:0000786 ... P06897 39149911
    890481 8v27:H (3.34) BS01 dna N/A GO:0000786 ... P02281 39149911
    890482 8v28:A (3.36) BS01 dna N/A GO:0000786 ... P84233 39149911
    890483 8v28:A (3.36) BS02 dna N/A GO:0000786 ... P84233 39149911
    890484 8v28:B (3.36) BS01 dna N/A GO:0000786 ... P62799 39149911
    890485 8v28:C (3.36) BS01 dna N/A GO:0000786 ... P06897 39149911
    890486 8v28:C (3.36) BS02 dna N/A GO:0000786 ... P06897 39149911
    890487 8v28:D (3.36) BS01 dna N/A GO:0000786 ... P02281 39149911
    890488 8v28:E (3.36) BS01 dna N/A GO:0000786 ... P84233 39149911
    890489 8v28:E (3.36) BS02 dna N/A GO:0000786 ... P84233 39149911
    890490 8v28:F (3.36) BS01 dna N/A GO:0000786 ... P62799 39149911
    890491 8v28:F (3.36) BS02 dna N/A GO:0000786 ... P62799 39149911
    890492 8v28:G (3.36) BS01 dna N/A GO:0000786 ... P06897 39149911
    890493 8v28:G (3.36) BS02 dna N/A GO:0000786 ... P06897 39149911
    890494 8v2f:A (2.09) BS01 YJU N/A GO:0000287 ... Q9NWZ3 38920289
    890495 8v2f:B (2.09) BS01 YJU N/A GO:0000287 ... Q9NWZ3 38920289
    890496 8v2f:C (2.09) BS01 YJU N/A GO:0000287 ... Q9NWZ3 38920289
    890497 8v2f:D (2.09) BS01 YJU N/A GO:0000287 ... Q9NWZ3 38920289
    890498 8v2i:A () BS01 GTP N/A N/A N/A N/A
    890499 8v2i:B () BS01 G2P N/A N/A N/A N/A
    890500 8v2i:I () BS01 GTP N/A N/A N/A N/A
    890501 8v2i:Q () BS01 G2P N/A N/A N/A N/A
    890502 8v2j:A (2.9) BS01 GTP N/A GO:0000226 ... P68363 N/A
    890503 8v2j:B (2.9) BS01 GDP N/A GO:0000226 ... P07437 N/A
    890504 8v2j:D (2.9) BS01 GTP N/A GO:0000226 ... P68363 N/A
    890505 8v2j:E (2.9) BS01 GDP N/A GO:0000226 ... P07437 N/A
    890506 8v2k:A (1.81) BS01 F0G 4.1.99.1 GO:0006520 ... P28796 N/A
    890507 8v2k:B (1.81) BS01 PLI 4.1.99.1 GO:0006520 ... P28796 N/A
    890508 8v2k:C (1.81) BS01 PLI 4.1.99.1 GO:0006520 ... P28796 N/A
    890509 8v2k:D (1.81) BS01 F0G 4.1.99.1 GO:0006520 ... P28796 N/A
    890510 8v2l:A (2.43) BS01 YK0 N/A GO:0000287 ... Q9NWZ3 38920289
    890511 8v2l:B (2.43) BS01 YK0 N/A GO:0000287 ... Q9NWZ3 38920289
    890512 8v2l:C (2.43) BS01 YK0 N/A GO:0000287 ... Q9NWZ3 38920289
    890513 8v2l:D (2.43) BS01 YK0 N/A GO:0000287 ... Q9NWZ3 38920289
    890514 8v2n:A (1.74) BS01 peptide 2.3.1.286 GO:0017136 ... Q9NTG7 N/A
    890515 8v2n:A (1.74) BS02 CNA 2.3.1.286 GO:0017136 ... Q9NTG7 N/A
    890516 8v2n:A (1.74) BS03 ZN 2.3.1.286 GO:0017136 ... Q9NTG7 N/A
    890517 8v2o:A (2.45) BS01 ADP 3.6.4.- GO:0005524 ... P63267 38820162
    890518 8v2o:B (2.45) BS01 ADP 3.6.4.- GO:0005524 ... P63267 38820162
    890519 8v2o:C (2.45) BS01 ADP 3.6.4.- GO:0005524 ... P63267 38820162
    890520 8v2o:D (2.45) BS01 ADP 3.6.4.- GO:0005524 ... P63267 38820162
    890521 8v2o:E (2.45) BS01 ADP 3.6.4.- GO:0005524 ... P63267 38820162
    890522 8v2t:A (1.402) BS01 XLR 5.3.1.28 GO:0005737 ... Q93UJ2 38598312
    890523 8v2t:A (1.402) BS02 ZN 5.3.1.28 GO:0005737 ... Q93UJ2 38598312
    890524 8v2y:A (2.86) BS01 FMN ? GO:0000166 ... Q6N7Y7 38417793
    890525 8v2y:B (2.86) BS01 FMN ? GO:0000166 ... Q6N7Y7 38417793
    890526 8v2z:A (2.72) BS01 ADP 3.6.4.- GO:0005524 ... P63267 38820162
    890527 8v2z:B (2.72) BS01 ADP 3.6.4.- GO:0005524 ... P63267 38820162
    890528 8v2z:C (2.72) BS01 ADP 3.6.4.- GO:0005524 ... P63267 38820162
    890529 8v2z:D (2.72) BS01 ADP 3.6.4.- GO:0005524 ... P63267 38820162
    890530 8v2z:E (2.72) BS01 ADP 3.6.4.- GO:0005524 ... P63267 38820162
    890531 8v30:A (2.54) BS01 peptide 3.6.4.- GO:0005524 ... P63267 38820162
    890532 8v30:A (2.54) BS02 ADP 3.6.4.- GO:0005524 ... P63267 38820162
    890533 8v30:B (2.54) BS01 peptide 3.6.4.- GO:0005524 ... P63267 38820162
    890534 8v30:B (2.54) BS02 peptide 3.6.4.- GO:0005524 ... P63267 38820162
    890535 8v30:B (2.54) BS03 ADP 3.6.4.- GO:0005524 ... P63267 38820162
    890536 8v30:C (2.54) BS01 peptide 3.6.4.- GO:0005524 ... P63267 38820162
    890537 8v30:C (2.54) BS02 peptide 3.6.4.- GO:0005524 ... P63267 38820162
    890538 8v30:C (2.54) BS03 ADP 3.6.4.- GO:0005524 ... P63267 38820162
    890539 8v30:D (2.54) BS01 peptide 3.6.4.- GO:0005524 ... P63267 38820162
    890540 8v30:D (2.54) BS02 peptide 3.6.4.- GO:0005524 ... P63267 38820162
    890541 8v30:D (2.54) BS03 ADP 3.6.4.- GO:0005524 ... P63267 38820162
    890542 8v30:E (2.54) BS01 peptide 3.6.4.- GO:0005524 ... P63267 38820162
    890543 8v30:E (2.54) BS02 peptide 3.6.4.- GO:0005524 ... P63267 38820162
    890544 8v30:E (2.54) BS03 ADP 3.6.4.- GO:0005524 ... P63267 38820162
    890545 8v31:A (2.65) BS01 MG N/A GO:0016787 ... A0A1Y3R144 N/A
    890546 8v31:C (2.65) BS01 MG N/A GO:0016787 ... A0A1Y3R144 N/A
    890547 8v32:J (3.01) BS01 dna N/A N/A N/A 39383864
    890548 8v32:J (3.01) BS02 dna N/A N/A N/A 39383864
    890549 8v32:J (3.01) BS03 ZN N/A N/A N/A 39383864
    890550 8v32:J (3.01) BS04 ZN N/A N/A N/A 39383864
    890551 8v32:Q (3.01) BS01 ATP N/A N/A A0A235IFM2 39383864
    890552 8v32:R (3.01) BS01 ATP N/A N/A A0A235IFM2 39383864
    890553 8v32:R (3.01) BS02 ATP N/A N/A A0A235IFM2 39383864
    890554 8v32:S (3.01) BS01 ATP N/A N/A A0A235IFM2 39383864
    890555 8v32:S (3.01) BS02 ATP N/A N/A A0A235IFM2 39383864
    890556 8v32:T (3.01) BS01 ATP N/A N/A A0A235IFM2 39383864
    890557 8v32:T (3.01) BS02 ATP N/A N/A A0A235IFM2 39383864
    890558 8v32:U (3.01) BS01 ATP N/A N/A A0A235IFM2 39383864
    890559 8v32:U (3.01) BS02 ATP N/A N/A A0A235IFM2 39383864
    890560 8v32:V (3.01) BS01 ATP N/A N/A A0A235IFM2 39383864
    890561 8v32:V (3.01) BS02 ATP N/A N/A A0A235IFM2 39383864
    890562 8v32:W (3.01) BS01 ATP N/A N/A A0A235IFM2 39383864
    890563 8v32:W (3.01) BS02 ATP N/A N/A A0A235IFM2 39383864
    890564 8v35:A (1.94) BS01 ZN N/A GO:0000105 ... Q46N53 39263660
    890565 8v35:B (1.94) BS01 ZN N/A GO:0000105 ... Q46N53 39263660
    890566 8v36:A (2.235) BS01 ZN N/A GO:0000105 ... Q46N53 39263660
    890567 8v36:A (2.235) BS02 NAI N/A GO:0000105 ... Q46N53 39263660
    890568 8v36:B (2.235) BS01 NAI N/A GO:0000105 ... Q46N53 39263660
    890569 8v36:B (2.235) BS02 ZN N/A GO:0000105 ... Q46N53 39263660
    890570 8v37:A (2.228) BS01 NAD N/A GO:0000105 ... Q46N53 39263660
    890571 8v37:A (2.228) BS02 ZN N/A GO:0000105 ... Q46N53 39263660
    890572 8v37:B (2.228) BS01 ZN N/A GO:0000105 ... Q46N53 39263660
    890573 8v39:A (2.1) BS01 GNP N/A N/A P01116 39642212
    890574 8v39:A (2.1) BS02 Y8N N/A N/A P01116 39642212
    890575 8v39:B (2.1) BS01 GNP N/A N/A P01116 39642212
    890576 8v39:B (2.1) BS02 Y8N N/A N/A P01116 39642212
    890577 8v39:C (2.1) BS01 GNP N/A N/A P01116 39642212
    890578 8v39:C (2.1) BS02 Y8N N/A N/A P01116 39642212
    890579 8v3a:A (1.67) BS01 GDP N/A N/A P01116 39642212
    890580 8v3a:A (1.67) BS02 Y8N N/A N/A P01116 39642212
    890581 8v3a:B (1.67) BS01 GDP N/A N/A P01116 39642212
    890582 8v3a:B (1.67) BS02 Y8N N/A N/A P01116 39642212
    890583 8v3d:D (2.95) BS01 A1AFC N/A GO:0004984 ... A0A1S4GFY3 38870275
    890584 8v3k:A (1.47) BS01 MG 4.2.3.37 GO:0010333 ... Q9K499 38420671
    890585 8v3k:A (1.47) BS02 DPO 4.2.3.37 GO:0010333 ... Q9K499 38420671
    890586 8v3k:A (1.47) BS03 BTM 4.2.3.37 GO:0010333 ... Q9K499 38420671
    890587 8v3m:A (1.8) BS01 ZN N/A GO:0004181 ... Q8NDL9 39020174
    890588 8v3n:A (2.3) BS01 ZN N/A GO:0004181 ... Q8NDL9 39020174
    890589 8v3n:A (2.3) BS02 A1AAG N/A GO:0004181 ... Q8NDL9 39020174
    890590 8v3o:A (2.3) BS01 peptide N/A GO:0004181 ... Q8NDL9 39020174
    890591 8v3o:A (2.3) BS02 ZN N/A GO:0004181 ... Q8NDL9 39020174
    890592 8v3p:A (2.36) BS01 peptide N/A GO:0004181 ... Q8NDL9 39020174
    890593 8v3p:A (2.36) BS02 ZN N/A GO:0004181 ... Q8NDL9 39020174
    890594 8v3q:A (3.1) BS01 peptide N/A GO:0004181 ... Q8NDL9 39020174
    890595 8v3q:A (3.1) BS02 ZN N/A GO:0004181 ... Q8NDL9 39020174
    890596 8v3q:A (3.1) BS03 GLU N/A GO:0004181 ... Q8NDL9 39020174
    890597 8v3r:A (3.4) BS01 peptide N/A GO:0004181 ... Q8NDL9 39020174
    890598 8v3r:A (3.4) BS02 ZN N/A GO:0004181 ... Q8NDL9 39020174
    890599 8v3r:A (3.4) BS03 GLU N/A GO:0004181 ... Q8NDL9 39020174
    890600 8v3s:A (3.6) BS01 peptide N/A GO:0004181 ... Q8NDL9 39020174

    Reference:
  • Chengxin Zhang, Xi Zhang, Lydia Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).