SEQ2FUN

BioLiP
Download all results in tab-seperated text for 942758 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.
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    # PDB
    (Resolution Å)
    Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    890801 8v5o:A (8.99) BS01 ZN 2.7.7.7 GO:0000166 ... Q9DE46 38491139
    890802 8v5o:A (8.99) BS02 ZN 2.7.7.7 GO:0000166 ... Q9DE46 38491139
    890803 8v5o:D (8.99) BS01 ZN 2.7.7.- GO:0000428 ... Q800A4 38491139
    890804 8v5r:A (3.0) BS01 dna N/A GO:0000262 ... P54098 38932681
    890805 8v5r:A (3.0) BS02 dna N/A GO:0000262 ... P54098 38932681
    890806 8v5r:A (3.0) BS03 MG N/A GO:0000262 ... P54098 38932681
    890807 8v5r:A (3.0) BS04 D3T N/A GO:0000262 ... P54098 38932681
    890808 8v5u:A (1.48) BS01 peptide N/A N/A Q9NTG7 N/A
    890809 8v5u:A (1.48) BS02 ZN N/A N/A Q9NTG7 N/A
    890810 8v5u:A (1.48) BS03 Y4T N/A N/A Q9NTG7 N/A
    890811 8v5y:A (2.059) BS01 peptide ? GO:0003779 ... A0A1B2YLJ4 38662449
    890812 8v5y:B (2.059) BS01 peptide ? GO:0003779 ... A0A1B2YLJ4 38662449
    890813 8v60:A (2.43) BS01 CLR N/A N/A Q12791 N/A
    890814 8v60:A (2.43) BS02 AJP N/A N/A Q12791 N/A
    890815 8v60:A (2.43) BS03 AJP N/A N/A Q12791 N/A
    890816 8v60:A (2.43) BS04 AJP N/A N/A Q12791 N/A
    890817 8v60:A (2.43) BS05 AJP N/A N/A Q12791 N/A
    890818 8v60:B (2.43) BS01 CLR N/A N/A Q12791 N/A
    890819 8v60:B (2.43) BS02 AJP N/A N/A Q12791 N/A
    890820 8v60:B (2.43) BS03 AJP N/A N/A Q12791 N/A
    890821 8v60:B (2.43) BS04 AJP N/A N/A Q12791 N/A
    890822 8v60:B (2.43) BS05 AJP N/A N/A Q12791 N/A
    890823 8v60:C (2.43) BS01 CLR N/A N/A Q12791 N/A
    890824 8v60:C (2.43) BS02 AJP N/A N/A Q12791 N/A
    890825 8v60:C (2.43) BS03 AJP N/A N/A Q12791 N/A
    890826 8v60:C (2.43) BS04 AJP N/A N/A Q12791 N/A
    890827 8v60:C (2.43) BS05 AJP N/A N/A Q12791 N/A
    890828 8v60:D (2.43) BS01 CLR N/A N/A Q12791 N/A
    890829 8v60:D (2.43) BS02 AJP N/A N/A Q12791 N/A
    890830 8v60:D (2.43) BS03 AJP N/A N/A Q12791 N/A
    890831 8v60:D (2.43) BS04 AJP N/A N/A Q12791 N/A
    890832 8v63:A (2.72) BS01 CLR N/A N/A Q12791 N/A
    890833 8v63:A (2.72) BS02 AJP N/A N/A Q12791 N/A
    890834 8v63:A (2.72) BS03 AJP N/A N/A Q12791 N/A
    890835 8v63:A (2.72) BS04 AJP N/A N/A Q12791 N/A
    890836 8v63:A (2.72) BS05 AJP N/A N/A Q12791 N/A
    890837 8v63:B (2.72) BS01 CLR N/A N/A Q12791 N/A
    890838 8v63:B (2.72) BS02 AJP N/A N/A Q12791 N/A
    890839 8v63:B (2.72) BS03 AJP N/A N/A Q12791 N/A
    890840 8v63:B (2.72) BS04 AJP N/A N/A Q12791 N/A
    890841 8v63:B (2.72) BS05 AJP N/A N/A Q12791 N/A
    890842 8v63:C (2.72) BS01 CLR N/A N/A Q12791 N/A
    890843 8v63:C (2.72) BS02 AJP N/A N/A Q12791 N/A
    890844 8v63:C (2.72) BS03 AJP N/A N/A Q12791 N/A
    890845 8v63:C (2.72) BS04 AJP N/A N/A Q12791 N/A
    890846 8v63:C (2.72) BS05 AJP N/A N/A Q12791 N/A
    890847 8v63:C (2.72) BS06 AJP N/A N/A Q12791 N/A
    890848 8v63:D (2.72) BS01 CLR N/A N/A Q12791 N/A
    890849 8v63:D (2.72) BS02 AJP N/A N/A Q12791 N/A
    890850 8v63:D (2.72) BS03 AJP N/A N/A Q12791 N/A
    890851 8v63:D (2.72) BS04 AJP N/A N/A Q12791 N/A
    890852 8v63:D (2.72) BS05 AJP N/A N/A Q12791 N/A
    890853 8v64:A (2.6) BS01 CLR N/A N/A Q12791 N/A
    890854 8v64:A (2.6) BS02 AJP N/A N/A Q12791 N/A
    890855 8v64:A (2.6) BS03 AJP N/A N/A Q12791 N/A
    890856 8v64:A (2.6) BS04 AJP N/A N/A Q12791 N/A
    890857 8v64:A (2.6) BS05 AJP N/A N/A Q12791 N/A
    890858 8v64:B (2.6) BS01 CLR N/A N/A Q12791 N/A
    890859 8v64:B (2.6) BS02 AJP N/A N/A Q12791 N/A
    890860 8v64:B (2.6) BS03 AJP N/A N/A Q12791 N/A
    890861 8v64:B (2.6) BS04 AJP N/A N/A Q12791 N/A
    890862 8v64:C (2.6) BS01 CLR N/A N/A Q12791 N/A
    890863 8v64:C (2.6) BS02 AJP N/A N/A Q12791 N/A
    890864 8v64:C (2.6) BS03 AJP N/A N/A Q12791 N/A
    890865 8v64:C (2.6) BS04 AJP N/A N/A Q12791 N/A
    890866 8v64:C (2.6) BS05 AJP N/A N/A Q12791 N/A
    890867 8v64:C (2.6) BS06 AJP N/A N/A Q12791 N/A
    890868 8v64:D (2.6) BS01 AJP N/A N/A Q12791 N/A
    890869 8v64:D (2.6) BS02 CLR N/A N/A Q12791 N/A
    890870 8v64:D (2.6) BS03 AJP N/A N/A Q12791 N/A
    890871 8v64:D (2.6) BS04 AJP N/A N/A Q12791 N/A
    890872 8v64:D (2.6) BS05 AJP N/A N/A Q12791 N/A
    890873 8v64:D (2.6) BS06 AJP N/A N/A Q12791 N/A
    890874 8v6g:A (11.16) BS01 dna 2.7.7.7 GO:0000166 ... Q9DE46 38491139
    890875 8v6g:A (11.16) BS02 rna 2.7.7.7 GO:0000166 ... Q9DE46 38491139
    890876 8v6g:A (11.16) BS03 ZN 2.7.7.7 GO:0000166 ... Q9DE46 38491139
    890877 8v6g:A (11.16) BS04 ZN 2.7.7.7 GO:0000166 ... Q9DE46 38491139
    890878 8v6g:A (11.16) BS05 DGT 2.7.7.7 GO:0000166 ... Q9DE46 38491139
    890879 8v6g:A (11.16) BS06 MG 2.7.7.7 GO:0000166 ... Q9DE46 38491139
    890880 8v6g:C (11.16) BS01 dna ? GO:0003677 ... A0A1L8G3G3 38491139
    890881 8v6g:C (11.16) BS02 rna ? GO:0003677 ... A0A1L8G3G3 38491139
    890882 8v6g:C (11.16) BS03 SF4 ? GO:0003677 ... A0A1L8G3G3 38491139
    890883 8v6g:D (11.16) BS01 ZN 2.7.7.- GO:0000428 ... Q800A4 38491139
    890884 8v6h:A (11.11) BS01 dna 2.7.7.7 GO:0000166 ... Q9DE46 38491139
    890885 8v6h:A (11.11) BS02 rna 2.7.7.7 GO:0000166 ... Q9DE46 38491139
    890886 8v6h:A (11.11) BS03 ZN 2.7.7.7 GO:0000166 ... Q9DE46 38491139
    890887 8v6h:A (11.11) BS04 ZN 2.7.7.7 GO:0000166 ... Q9DE46 38491139
    890888 8v6h:A (11.11) BS05 DGT 2.7.7.7 GO:0000166 ... Q9DE46 38491139
    890889 8v6h:A (11.11) BS06 MG 2.7.7.7 GO:0000166 ... Q9DE46 38491139
    890890 8v6h:C (11.11) BS01 dna ? GO:0003677 ... A0A1L8G3G3 38491139
    890891 8v6h:C (11.11) BS02 rna ? GO:0003677 ... A0A1L8G3G3 38491139
    890892 8v6h:C (11.11) BS03 SF4 ? GO:0003677 ... A0A1L8G3G3 38491139
    890893 8v6h:D (11.11) BS01 ZN 2.7.7.- GO:0000428 ... Q800A4 38491139
    890894 8v6i:A (14.06) BS01 dna 2.7.7.7 GO:0000166 ... Q9DE46 38491139
    890895 8v6i:A (14.06) BS02 dna 2.7.7.7 GO:0000166 ... Q9DE46 38491139
    890896 8v6i:A (14.06) BS03 ZN 2.7.7.7 GO:0000166 ... Q9DE46 38491139
    890897 8v6i:A (14.06) BS04 ZN 2.7.7.7 GO:0000166 ... Q9DE46 38491139
    890898 8v6i:A (14.06) BS05 DGT 2.7.7.7 GO:0000166 ... Q9DE46 38491139
    890899 8v6i:A (14.06) BS06 MG 2.7.7.7 GO:0000166 ... Q9DE46 38491139
    890900 8v6i:C (14.06) BS01 dna ? GO:0003677 ... A0A1L8G3G3 38491139
    890901 8v6i:C (14.06) BS02 dna ? GO:0003677 ... A0A1L8G3G3 38491139
    890902 8v6i:C (14.06) BS03 SF4 ? GO:0003677 ... A0A1L8G3G3 38491139
    890903 8v6i:D (14.06) BS01 ZN 2.7.7.- GO:0000428 ... Q800A4 38491139
    890904 8v6j:A (11.11) BS01 dna 2.7.7.7 GO:0000166 ... Q9DE46 38491139
    890905 8v6j:A (11.11) BS02 dna 2.7.7.7 GO:0000166 ... Q9DE46 38491139
    890906 8v6j:A (11.11) BS03 ZN 2.7.7.7 GO:0000166 ... Q9DE46 38491139
    890907 8v6j:A (11.11) BS04 ZN 2.7.7.7 GO:0000166 ... Q9DE46 38491139
    890908 8v6j:A (11.11) BS05 DGT 2.7.7.7 GO:0000166 ... Q9DE46 38491139
    890909 8v6j:A (11.11) BS06 MG 2.7.7.7 GO:0000166 ... Q9DE46 38491139
    890910 8v6j:C (11.11) BS01 dna ? GO:0003677 ... A0A1L8G3G3 38491139
    890911 8v6j:C (11.11) BS02 dna ? GO:0003677 ... A0A1L8G3G3 38491139
    890912 8v6j:C (11.11) BS03 SF4 ? GO:0003677 ... A0A1L8G3G3 38491139
    890913 8v6j:D (11.11) BS01 ZN 2.7.7.- GO:0000428 ... Q800A4 38491139
    890914 8v6l:A (3.68) BS01 I8E ? GO:0005216 ... Q8NET8 38691614
    890915 8v6l:B (3.68) BS01 I8E ? GO:0005216 ... Q8NET8 38691614
    890916 8v6l:C (3.68) BS01 I8E ? GO:0005216 ... Q8NET8 38691614
    890917 8v6l:D (3.68) BS01 I8E ? GO:0005216 ... Q8NET8 38691614
    890918 8v6m:A (3.63) BS01 I8E ? GO:0005216 ... Q8NET8 38691614
    890919 8v6m:B (3.63) BS01 I8E ? GO:0005216 ... Q8NET8 38691614
    890920 8v6m:C (3.63) BS01 I8E ? GO:0005216 ... Q8NET8 38691614
    890921 8v6m:D (3.63) BS01 I8E ? GO:0005216 ... Q8NET8 38691614
    890922 8v6n:A (2.59) BS01 ACD ? GO:0005216 ... Q8NET8 38691614
    890923 8v6n:A (2.59) BS02 FZ4 ? GO:0005216 ... Q8NET8 38691614
    890924 8v6n:A (2.59) BS03 FZ4 ? GO:0005216 ... Q8NET8 38691614
    890925 8v6n:B (2.59) BS01 ACD ? GO:0005216 ... Q8NET8 38691614
    890926 8v6n:B (2.59) BS02 FZ4 ? GO:0005216 ... Q8NET8 38691614
    890927 8v6n:B (2.59) BS03 FZ4 ? GO:0005216 ... Q8NET8 38691614
    890928 8v6n:C (2.59) BS01 ACD ? GO:0005216 ... Q8NET8 38691614
    890929 8v6n:C (2.59) BS02 FZ4 ? GO:0005216 ... Q8NET8 38691614
    890930 8v6n:C (2.59) BS03 FZ4 ? GO:0005216 ... Q8NET8 38691614
    890931 8v6n:D (2.59) BS01 ACD ? GO:0005216 ... Q8NET8 38691614
    890932 8v6n:D (2.59) BS02 FZ4 ? GO:0005216 ... Q8NET8 38691614
    890933 8v6n:D (2.59) BS03 FZ4 ? GO:0005216 ... Q8NET8 38691614
    890934 8v6o:A (2.83) BS01 FZ4 ? GO:0005216 ... Q8NET8 38691614
    890935 8v6o:A (2.83) BS02 FZ4 ? GO:0005216 ... Q8NET8 38691614
    890936 8v6o:B (2.83) BS01 FZ4 ? GO:0005216 ... Q8NET8 38691614
    890937 8v6o:B (2.83) BS02 FZ4 ? GO:0005216 ... Q8NET8 38691614
    890938 8v6o:C (2.83) BS01 FZ4 ? GO:0005216 ... Q8NET8 38691614
    890939 8v6o:C (2.83) BS02 FZ4 ? GO:0005216 ... Q8NET8 38691614
    890940 8v6o:D (2.83) BS01 FZ4 ? GO:0005216 ... Q8NET8 38691614
    890941 8v6o:D (2.83) BS02 FZ4 ? GO:0005216 ... Q8NET8 38691614
    890942 8v6p:A (1.74) BS01 A1ACN 4.1.99.1 GO:0006520 ... P28796 39114092
    890943 8v6p:B (1.74) BS01 A1ABZ 4.1.99.1 GO:0006520 ... P28796 39114092
    890944 8v6p:C (1.74) BS01 A1ACN 4.1.99.1 GO:0006520 ... P28796 39114092
    890945 8v6p:D (1.74) BS01 A1ABZ 4.1.99.1 GO:0006520 ... P28796 39114092
    890946 8v6r:A (2.14) BS01 AR6 ? N/A A0A178STJ6 38924412
    890947 8v6r:B (2.14) BS01 AR6 ? N/A A0A178STJ6 38924412
    890948 8v6s:A (1.6) BS01 YG8 ? N/A A0A7Y5Z1U6 38924412
    890949 8v6s:B (1.6) BS01 YG8 ? N/A A0A7Y5Z1U6 38924412
    890950 8v6u:A (3.0) BS01 YEQ ? GO:0004930 ... P28223 38753765
    890951 8v6v:A (2.8) BS01 dna ? GO:0000786 ... P84233 38472177
    890952 8v6v:A (2.8) BS02 dna ? GO:0000786 ... P84233 38472177
    890953 8v6v:B (2.8) BS01 dna ? GO:0000786 ... P62799 38472177
    890954 8v6v:B (2.8) BS02 dna ? GO:0000786 ... P62799 38472177
    890955 8v6v:C (2.8) BS01 dna ? GO:0000786 ... P06897 38472177
    890956 8v6v:C (2.8) BS02 dna ? GO:0000786 ... P06897 38472177
    890957 8v6v:D (2.8) BS01 dna ? GO:0000786 ... P02281 38472177
    890958 8v6v:D (2.8) BS02 dna ? GO:0000786 ... P02281 38472177
    890959 8v6v:E (2.8) BS01 dna ? GO:0000786 ... P84233 38472177
    890960 8v6v:E (2.8) BS02 dna ? GO:0000786 ... P84233 38472177
    890961 8v6v:F (2.8) BS01 dna ? GO:0000786 ... P62799 38472177
    890962 8v6v:F (2.8) BS02 dna ? GO:0000786 ... P62799 38472177
    890963 8v6v:G (2.8) BS01 dna ? GO:0000786 ... P06897 38472177
    890964 8v6v:G (2.8) BS02 dna ? GO:0000786 ... P06897 38472177
    890965 8v6v:H (2.8) BS01 dna ? GO:0000786 ... P02281 38472177
    890966 8v6v:H (2.8) BS02 dna ? GO:0000786 ... P02281 38472177
    890967 8v6v:W (2.8) BS01 dna 3.6.4.- GO:0000183 ... O60264 38472177
    890968 8v6v:W (2.8) BS02 dna 3.6.4.- GO:0000183 ... O60264 38472177
    890969 8v6v:W (2.8) BS03 ADP 3.6.4.- GO:0000183 ... O60264 38472177
    890970 8v6v:X (2.8) BS01 dna 3.6.4.- GO:0000183 ... O60264 38472177
    890971 8v6v:X (2.8) BS02 dna 3.6.4.- GO:0000183 ... O60264 38472177
    890972 8v6v:X (2.8) BS03 ADP 3.6.4.- GO:0000183 ... O60264 38472177
    890973 8v6w:A (1.95) BS01 YHE N/A N/A Q8NFU5 N/A
    890974 8v6x:A (1.75) BS01 YHH N/A N/A Q8NFU5 N/A
    890975 8v6y:A (1.7) BS01 YHN N/A N/A Q8NFU5 N/A
    890976 8v6z:A (1.85) BS01 YHS N/A N/A Q8NFU5 N/A
    890977 8v70:A (1.85) BS01 YHW N/A N/A Q8NFU5 N/A
    890978 8v71:A (1.7) BS01 YI8 N/A N/A Q8NFU5 N/A
    890979 8v72:A (2.0) BS01 YIB N/A N/A Q8NFU5 N/A
    890980 8v73:A (1.9) BS01 YIG N/A N/A Q8NFU5 N/A
    890981 8v74:A (1.85) BS01 YJQ N/A N/A Q8NFU5 N/A
    890982 8v75:A (1.85) BS01 YIK N/A N/A Q8NFU5 N/A
    890983 8v76:A (1.9) BS01 YIU N/A N/A Q8NFU5 N/A
    890984 8v77:A (1.95) BS01 YJ3 N/A N/A Q8NFU5 N/A
    890985 8v78:A (1.96) BS01 YJB N/A N/A Q8NFU5 N/A
    890986 8v79:A (1.95) BS01 YJH N/A N/A Q8NFU5 N/A
    890987 8v7a:A (1.95) BS01 dna 2.7.7.7 GO:0003684 ... Q9Y253 N/A
    890988 8v7a:A (1.95) BS02 dna 2.7.7.7 GO:0003684 ... Q9Y253 N/A
    890989 8v7a:A (1.95) BS03 DCP 2.7.7.7 GO:0003684 ... Q9Y253 N/A
    890990 8v7a:A (1.95) BS04 CA 2.7.7.7 GO:0003684 ... Q9Y253 N/A
    890991 8v7b:A (1.9) BS01 dna 2.7.7.7 GO:0003684 ... Q9Y253 N/A
    890992 8v7b:A (1.9) BS02 dna 2.7.7.7 GO:0003684 ... Q9Y253 N/A
    890993 8v7b:A (1.9) BS03 HF4 2.7.7.7 GO:0003684 ... Q9Y253 N/A
    890994 8v7b:A (1.9) BS04 CA 2.7.7.7 GO:0003684 ... Q9Y253 N/A
    890995 8v7c:A (1.79) BS01 dna 2.7.7.7 GO:0003684 ... Q9Y253 N/A
    890996 8v7c:A (1.79) BS02 dna 2.7.7.7 GO:0003684 ... Q9Y253 N/A
    890997 8v7c:A (1.79) BS03 GTF 2.7.7.7 GO:0003684 ... Q9Y253 N/A
    890998 8v7c:A (1.79) BS04 CA 2.7.7.7 GO:0003684 ... Q9Y253 N/A
    890999 8v7d:A (1.95) BS01 dna 2.7.7.7 GO:0003684 ... Q9Y253 N/A
    891000 8v7d:A (1.95) BS02 dna 2.7.7.7 GO:0003684 ... Q9Y253 N/A

    Reference:
  • Chengxin Zhang, Xi Zhang, Lydia Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).