SEQ2FUN

BioLiP
Download all results in tab-seperated text for 942758 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.
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    # PDB
    (Resolution Å)
    Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    891001 8v7d:A (1.95) BS03 CTP 2.7.7.7 GO:0003684 ... Q9Y253 N/A
    891002 8v7d:A (1.95) BS04 CA 2.7.7.7 GO:0003684 ... Q9Y253 N/A
    891003 8v7e:A (1.82) BS01 dna 2.7.7.7 GO:0003684 ... Q9Y253 N/A
    891004 8v7e:A (1.82) BS02 dna 2.7.7.7 GO:0003684 ... Q9Y253 N/A
    891005 8v7e:A (1.82) BS03 MG 2.7.7.7 GO:0003684 ... Q9Y253 N/A
    891006 8v7e:A (1.82) BS04 MG 2.7.7.7 GO:0003684 ... Q9Y253 N/A
    891007 8v7e:A (1.82) BS05 DZ4 2.7.7.7 GO:0003684 ... Q9Y253 N/A
    891008 8v7f:A (2.2) BS01 dna 2.7.7.7 GO:0003684 ... Q9Y253 N/A
    891009 8v7f:A (2.2) BS02 dna 2.7.7.7 GO:0003684 ... Q9Y253 N/A
    891010 8v7f:A (2.2) BS03 MN 2.7.7.7 GO:0003684 ... Q9Y253 N/A
    891011 8v7f:A (2.2) BS04 MN 2.7.7.7 GO:0003684 ... Q9Y253 N/A
    891012 8v7f:A (2.2) BS05 DZ4 2.7.7.7 GO:0003684 ... Q9Y253 N/A
    891013 8v7g:A (1.52) BS01 dna 2.7.7.7 GO:0003684 ... Q9Y253 N/A
    891014 8v7g:A (1.52) BS02 dna 2.7.7.7 GO:0003684 ... Q9Y253 N/A
    891015 8v7g:A (1.52) BS03 MG 2.7.7.7 GO:0003684 ... Q9Y253 N/A
    891016 8v7g:A (1.52) BS04 MG 2.7.7.7 GO:0003684 ... Q9Y253 N/A
    891017 8v7g:A (1.52) BS05 DZ4 2.7.7.7 GO:0003684 ... Q9Y253 N/A
    891018 8v7h:A (1.68) BS01 dna 2.7.7.7 GO:0003684 ... Q9Y253 N/A
    891019 8v7h:A (1.68) BS02 dna 2.7.7.7 GO:0003684 ... Q9Y253 N/A
    891020 8v7h:A (1.68) BS03 CA 2.7.7.7 GO:0003684 ... Q9Y253 N/A
    891021 8v7h:A (1.68) BS04 DTP 2.7.7.7 GO:0003684 ... Q9Y253 N/A
    891022 8v7i:A (1.72) BS01 dna 2.7.7.7 GO:0003684 ... Q9Y253 N/A
    891023 8v7i:A (1.72) BS02 dna 2.7.7.7 GO:0003684 ... Q9Y253 N/A
    891024 8v7i:A (1.72) BS03 MG 2.7.7.7 GO:0003684 ... Q9Y253 N/A
    891025 8v7i:A (1.72) BS04 MG 2.7.7.7 GO:0003684 ... Q9Y253 N/A
    891026 8v7i:A (1.72) BS05 DTP 2.7.7.7 GO:0003684 ... Q9Y253 N/A
    891027 8v7j:A (1.66) BS01 dna 2.7.7.7 GO:0003684 ... Q9Y253 N/A
    891028 8v7j:A (1.66) BS02 dna 2.7.7.7 GO:0003684 ... Q9Y253 N/A
    891029 8v7j:A (1.66) BS03 MG 2.7.7.7 GO:0003684 ... Q9Y253 N/A
    891030 8v7j:A (1.66) BS04 MG 2.7.7.7 GO:0003684 ... Q9Y253 N/A
    891031 8v7j:A (1.66) BS05 DTP 2.7.7.7 GO:0003684 ... Q9Y253 N/A
    891032 8v7k:A (1.65) BS01 dna 2.7.7.7 GO:0003684 ... Q9Y253 N/A
    891033 8v7k:A (1.65) BS02 dna 2.7.7.7 GO:0003684 ... Q9Y253 N/A
    891034 8v7k:A (1.65) BS03 MN 2.7.7.7 GO:0003684 ... Q9Y253 N/A
    891035 8v7k:A (1.65) BS04 MN 2.7.7.7 GO:0003684 ... Q9Y253 N/A
    891036 8v7k:A (1.65) BS05 DTP 2.7.7.7 GO:0003684 ... Q9Y253 N/A
    891037 8v7l:A (2.9) BS01 dna ? GO:0000786 ... P84233 38472177
    891038 8v7l:A (2.9) BS02 dna ? GO:0000786 ... P84233 38472177
    891039 8v7l:B (2.9) BS01 dna ? GO:0000786 ... P62799 38472177
    891040 8v7l:B (2.9) BS02 dna ? GO:0000786 ... P62799 38472177
    891041 8v7l:C (2.9) BS01 dna ? GO:0000786 ... P06897 38472177
    891042 8v7l:C (2.9) BS02 dna ? GO:0000786 ... P06897 38472177
    891043 8v7l:D (2.9) BS01 dna ? GO:0000786 ... P02281 38472177
    891044 8v7l:D (2.9) BS02 dna ? GO:0000786 ... P02281 38472177
    891045 8v7l:E (2.9) BS01 dna ? GO:0000786 ... P84233 38472177
    891046 8v7l:E (2.9) BS02 dna ? GO:0000786 ... P84233 38472177
    891047 8v7l:F (2.9) BS01 dna ? GO:0000786 ... P62799 38472177
    891048 8v7l:F (2.9) BS02 dna ? GO:0000786 ... P62799 38472177
    891049 8v7l:G (2.9) BS01 dna ? GO:0000786 ... P06897 38472177
    891050 8v7l:G (2.9) BS02 dna ? GO:0000786 ... P06897 38472177
    891051 8v7l:H (2.9) BS01 dna ? GO:0000786 ... P02281 38472177
    891052 8v7l:H (2.9) BS02 dna ? GO:0000786 ... P02281 38472177
    891053 8v7l:W (2.9) BS01 dna 3.6.4.- GO:0000183 ... O60264 38472177
    891054 8v7l:W (2.9) BS02 dna 3.6.4.- GO:0000183 ... O60264 38472177
    891055 8v7l:W (2.9) BS03 ADP 3.6.4.- GO:0000183 ... O60264 38472177
    891056 8v7r:A (1.41) BS01 YG9 2.1.1.56
    2.1.1.57
    2.7.7.48
    3.4.21.91
    3.6.1.15
    3.6.4.13
    GO:0004386 ... Q32ZE1 N/A
    891057 8v7r:A (1.41) BS02 YG9 2.1.1.56
    2.1.1.57
    2.7.7.48
    3.4.21.91
    3.6.1.15
    3.6.4.13
    GO:0004386 ... Q32ZE1 N/A
    891058 8v7u:A (1.82) BS01 YDU 2.1.1.56
    2.1.1.57
    2.7.7.48
    3.4.21.91
    3.6.1.15
    3.6.4.13
    GO:0004386 ... Q32ZE1 N/A
    891059 8v7z:A (3.4) BS01 MG N/A GO:0005254 ... P13569 39107303
    891060 8v7z:A (3.4) BS02 MG N/A GO:0005254 ... P13569 39107303
    891061 8v7z:A (3.4) BS03 ATP N/A GO:0005254 ... P13569 39107303
    891062 8v7z:A (3.4) BS04 ATP N/A GO:0005254 ... P13569 39107303
    891063 8v7z:A (3.4) BS05 CLR N/A GO:0005254 ... P13569 39107303
    891064 8v80:A (2.34) BS01 CA ? GO:0004888 ... P0ABE7
    P36544
    38382524
    891065 8v80:A (2.34) BS02 9Z9 ? GO:0004888 ... P0ABE7
    P36544
    38382524
    891066 8v80:A (2.34) BS03 EPJ ? GO:0004888 ... P0ABE7
    P36544
    38382524
    891067 8v80:A (2.34) BS04 YLR ? GO:0004888 ... P0ABE7
    P36544
    38382524
    891068 8v80:A (2.34) BS05 EPJ ? GO:0004888 ... P0ABE7
    P36544
    38382524
    891069 8v80:A (2.34) BS06 YLR ? GO:0004888 ... P0ABE7
    P36544
    38382524
    891070 8v80:B (2.34) BS01 EPJ ? GO:0004888 ... P0ABE7
    P36544
    38382524
    891071 8v80:B (2.34) BS02 YLR ? GO:0004888 ... P0ABE7
    P36544
    38382524
    891072 8v80:B (2.34) BS03 CA ? GO:0004888 ... P0ABE7
    P36544
    38382524
    891073 8v80:B (2.34) BS04 9Z9 ? GO:0004888 ... P0ABE7
    P36544
    38382524
    891074 8v80:B (2.34) BS05 EPJ ? GO:0004888 ... P0ABE7
    P36544
    38382524
    891075 8v80:B (2.34) BS06 YLR ? GO:0004888 ... P0ABE7
    P36544
    38382524
    891076 8v80:C (2.34) BS01 EPJ ? GO:0004888 ... P0ABE7
    P36544
    38382524
    891077 8v80:C (2.34) BS02 YLR ? GO:0004888 ... P0ABE7
    P36544
    38382524
    891078 8v80:C (2.34) BS03 CA ? GO:0004888 ... P0ABE7
    P36544
    38382524
    891079 8v80:C (2.34) BS04 9Z9 ? GO:0004888 ... P0ABE7
    P36544
    38382524
    891080 8v80:C (2.34) BS05 EPJ ? GO:0004888 ... P0ABE7
    P36544
    38382524
    891081 8v80:C (2.34) BS06 YLR ? GO:0004888 ... P0ABE7
    P36544
    38382524
    891082 8v80:D (2.34) BS01 EPJ ? GO:0004888 ... P0ABE7
    P36544
    38382524
    891083 8v80:D (2.34) BS02 YLR ? GO:0004888 ... P0ABE7
    P36544
    38382524
    891084 8v80:D (2.34) BS03 CA ? GO:0004888 ... P0ABE7
    P36544
    38382524
    891085 8v80:D (2.34) BS04 9Z9 ? GO:0004888 ... P0ABE7
    P36544
    38382524
    891086 8v80:D (2.34) BS05 EPJ ? GO:0004888 ... P0ABE7
    P36544
    38382524
    891087 8v80:D (2.34) BS06 YLR ? GO:0004888 ... P0ABE7
    P36544
    38382524
    891088 8v80:E (2.34) BS01 EPJ ? GO:0004888 ... P0ABE7
    P36544
    38382524
    891089 8v80:E (2.34) BS02 YLR ? GO:0004888 ... P0ABE7
    P36544
    38382524
    891090 8v80:E (2.34) BS03 CA ? GO:0004888 ... P0ABE7
    P36544
    38382524
    891091 8v80:E (2.34) BS04 9Z9 ? GO:0004888 ... P0ABE7
    P36544
    38382524
    891092 8v80:E (2.34) BS05 EPJ ? GO:0004888 ... P0ABE7
    P36544
    38382524
    891093 8v80:E (2.34) BS06 YLR ? GO:0004888 ... P0ABE7
    P36544
    38382524
    891094 8v81:A (3.6) BS01 ATP N/A GO:0005254 ... P13569 39107303
    891095 8v81:A (3.6) BS02 ATP N/A GO:0005254 ... P13569 39107303
    891096 8v81:A (3.6) BS03 CLR N/A GO:0005254 ... P13569 39107303
    891097 8v81:A (3.6) BS04 WG5 N/A GO:0005254 ... P13569 39107303
    891098 8v82:A (2.61) BS01 CA ? GO:0004888 ... P0ABE7
    P36544
    38382524
    891099 8v82:A (2.61) BS02 9Z9 ? GO:0004888 ... P0ABE7
    P36544
    38382524
    891100 8v82:A (2.61) BS03 EPJ ? GO:0004888 ... P0ABE7
    P36544
    38382524
    891101 8v82:A (2.61) BS04 I34 ? GO:0004888 ... P0ABE7
    P36544
    38382524
    891102 8v82:A (2.61) BS05 I34 ? GO:0004888 ... P0ABE7
    P36544
    38382524
    891103 8v82:A (2.61) BS06 EPJ ? GO:0004888 ... P0ABE7
    P36544
    38382524
    891104 8v82:B (2.61) BS01 EPJ ? GO:0004888 ... P0ABE7
    P36544
    38382524
    891105 8v82:B (2.61) BS02 I34 ? GO:0004888 ... P0ABE7
    P36544
    38382524
    891106 8v82:B (2.61) BS03 CA ? GO:0004888 ... P0ABE7
    P36544
    38382524
    891107 8v82:B (2.61) BS04 9Z9 ? GO:0004888 ... P0ABE7
    P36544
    38382524
    891108 8v82:B (2.61) BS05 EPJ ? GO:0004888 ... P0ABE7
    P36544
    38382524
    891109 8v82:B (2.61) BS06 I34 ? GO:0004888 ... P0ABE7
    P36544
    38382524
    891110 8v82:C (2.61) BS01 EPJ ? GO:0004888 ... P0ABE7
    P36544
    38382524
    891111 8v82:C (2.61) BS02 I34 ? GO:0004888 ... P0ABE7
    P36544
    38382524
    891112 8v82:C (2.61) BS03 CA ? GO:0004888 ... P0ABE7
    P36544
    38382524
    891113 8v82:C (2.61) BS04 9Z9 ? GO:0004888 ... P0ABE7
    P36544
    38382524
    891114 8v82:C (2.61) BS05 EPJ ? GO:0004888 ... P0ABE7
    P36544
    38382524
    891115 8v82:C (2.61) BS06 I34 ? GO:0004888 ... P0ABE7
    P36544
    38382524
    891116 8v82:D (2.61) BS01 EPJ ? GO:0004888 ... P0ABE7
    P36544
    38382524
    891117 8v82:D (2.61) BS02 I34 ? GO:0004888 ... P0ABE7
    P36544
    38382524
    891118 8v82:D (2.61) BS03 CA ? GO:0004888 ... P0ABE7
    P36544
    38382524
    891119 8v82:D (2.61) BS04 9Z9 ? GO:0004888 ... P0ABE7
    P36544
    38382524
    891120 8v82:D (2.61) BS05 EPJ ? GO:0004888 ... P0ABE7
    P36544
    38382524
    891121 8v82:D (2.61) BS06 I34 ? GO:0004888 ... P0ABE7
    P36544
    38382524
    891122 8v82:E (2.61) BS01 I34 ? GO:0004888 ... P0ABE7
    P36544
    38382524
    891123 8v82:E (2.61) BS02 EPJ ? GO:0004888 ... P0ABE7
    P36544
    38382524
    891124 8v82:E (2.61) BS03 I34 ? GO:0004888 ... P0ABE7
    P36544
    38382524
    891125 8v82:E (2.61) BS04 CA ? GO:0004888 ... P0ABE7
    P36544
    38382524
    891126 8v82:E (2.61) BS05 9Z9 ? GO:0004888 ... P0ABE7
    P36544
    38382524
    891127 8v82:E (2.61) BS06 EPJ ? GO:0004888 ... P0ABE7
    P36544
    38382524
    891128 8v83:8 (2.53) BS01 rna ? GO:0003674 ... P36080 38632236
    891129 8v83:A (2.53) BS01 rna ? GO:0000027 ... Q08235 38632236
    891130 8v83:B (2.53) BS01 rna ? GO:0000027 ... P14126 38632236
    891131 8v83:C (2.53) BS01 rna ? GO:0002181 ... P10664 38632236
    891132 8v83:C (2.53) BS02 rna ? GO:0002181 ... P10664 38632236
    891133 8v83:D (2.53) BS01 rna 3.6.4.13 GO:0000462 ... Q03532 38632236
    891134 8v83:E (2.53) BS01 rna ? GO:0000027 ... Q02326 38632236
    891135 8v83:F (2.53) BS01 rna ? GO:0000463 ... P05737 38632236
    891136 8v83:G (2.53) BS01 rna ? GO:0000470 ... P17076 38632236
    891137 8v83:G (2.53) BS02 rna ? GO:0000470 ... P17076 38632236
    891138 8v83:H (2.53) BS01 rna ? GO:0002181 ... P05738 38632236
    891139 8v83:I (2.53) BS01 rna ? GO:0003674 ... P53136 38632236
    891140 8v83:J (2.53) BS01 rna ? GO:0000280 ... P36049 38632236
    891141 8v83:K (2.53) BS01 rna ? GO:0000463 ... P38779 38632236
    891142 8v83:L (2.53) BS01 rna ? GO:0002181 ... Q12690 38632236
    891143 8v83:L (2.53) BS02 rna ? GO:0002181 ... Q12690 38632236
    891144 8v83:M (2.53) BS01 rna ? GO:0000027 ... P36105 38632236
    891145 8v83:N (2.53) BS01 rna ? GO:0002181 ... P05748 38632236
    891146 8v83:N (2.53) BS02 rna ? GO:0002181 ... P05748 38632236
    891147 8v83:O (2.53) BS01 rna ? GO:0000470 ... P26784 38632236
    891148 8v83:P (2.53) BS01 rna ? GO:0000448 ... P05740 38632236
    891149 8v83:P (2.53) BS02 rna ? GO:0000448 ... P05740 38632236
    891150 8v83:Q (2.53) BS01 rna ? GO:0002181 ... P0CX49 38632236
    891151 8v83:R (2.53) BS01 rna ? GO:0000460 ... P10962 38632236
    891152 8v83:S (2.53) BS01 rna ? GO:0002181 ... P0CX23 38632236
    891153 8v83:V (2.53) BS01 rna ? GO:0002181 ... P0CX41 38632236
    891154 8v83:W (2.53) BS01 rna ? GO:0000027 ... P33201 38632236
    891155 8v83:Y (2.53) BS01 rna ? GO:0002181 ... P05743 38632236
    891156 8v83:Y (2.53) BS02 rna ? GO:0002181 ... P05743 38632236
    891157 8v83:Z (2.53) BS01 rna ? GO:0000027 ... P38789 38632236
    891158 8v83:a (2.53) BS01 rna ? GO:0000055 ... P0CX43 38632236
    891159 8v83:b (2.53) BS01 rna ? GO:0000054 ... Q02892 38632236
    891160 8v83:e (2.53) BS01 rna ? GO:0002181 ... P38061 38632236
    891161 8v83:f (2.53) BS01 rna ? GO:0000027 ... P05744 38632236
    891162 8v83:h (2.53) BS01 rna ? GO:0000463 ... P0CX84 38632236
    891163 8v83:h (2.53) BS02 rna ? GO:0000463 ... P0CX84 38632236
    891164 8v83:i (2.53) BS01 rna ? GO:0002181 ... P05745 38632236
    891165 8v83:j (2.53) BS01 rna ? GO:0000448 ... P49166 38632236
    891166 8v83:j (2.53) BS02 rna ? GO:0000448 ... P49166 38632236
    891167 8v83:j (2.53) BS03 ZN ? GO:0000448 ... P49166 38632236
    891168 8v83:l (2.53) BS01 rna ? GO:0000463 ... Q08962 38632236
    891169 8v83:l (2.53) BS02 peptide ? GO:0000463 ... Q08962 38632236
    891170 8v83:m (2.53) BS01 rna ? GO:0000463 ... Q04660 38632236
    891171 8v83:n (2.53) BS01 rna ? GO:0000462 ... P53261 38632236
    891172 8v83:n (2.53) BS02 rna ? GO:0000462 ... P53261 38632236
    891173 8v83:o (2.53) BS01 rna ? GO:0000463 ... P53927 38632236
    891174 8v83:q (2.53) BS01 rna 2.1.1.310 GO:0000463 ... P40991 38632236
    891175 8v83:r (2.53) BS01 rna ? GO:0000460 ... P40078 38632236
    891176 8v83:t (2.53) BS01 rna ? GO:0000463 ... P40693 38632236
    891177 8v83:t (2.53) BS02 rna ? GO:0000463 ... P40693 38632236
    891178 8v83:u (2.53) BS01 rna ? GO:0001671 ... Q07915 38632236
    891179 8v83:u (2.53) BS02 ZN ? GO:0001671 ... Q07915 38632236
    891180 8v83:v (2.53) BS01 rna ? GO:0003674 ... P40007 38632236
    891181 8v83:v (2.53) BS02 rna ? GO:0003674 ... P40007 38632236
    891182 8v83:w (2.53) BS01 rna ? GO:0003674 ... P35178 38632236
    891183 8v83:x (2.53) BS01 rna ? GO:0000055 ... P38805 38632236
    891184 8v83:y (2.53) BS01 rna ? GO:0000054 ... Q12522 38632236
    891185 8v84:3 (2.7) BS01 rna 3.6.4.13 GO:0000463 ... Q12389 38632236
    891186 8v84:8 (2.7) BS01 rna ? GO:0003674 ... P36080 38632236
    891187 8v84:A (2.7) BS01 rna ? GO:0000027 ... Q08235 38632236
    891188 8v84:B (2.7) BS01 rna ? GO:0000027 ... P14126 38632236
    891189 8v84:C (2.7) BS01 rna ? GO:0002181 ... P10664 38632236
    891190 8v84:C (2.7) BS02 rna ? GO:0002181 ... P10664 38632236
    891191 8v84:D (2.7) BS01 rna 3.6.4.13 GO:0000462 ... Q03532 38632236
    891192 8v84:E (2.7) BS01 rna ? GO:0000027 ... Q02326 38632236
    891193 8v84:F (2.7) BS01 rna ? GO:0000463 ... P05737 38632236
    891194 8v84:G (2.7) BS01 rna ? GO:0000470 ... P17076 38632236
    891195 8v84:G (2.7) BS02 rna ? GO:0000470 ... P17076 38632236
    891196 8v84:G (2.7) BS03 rna ? GO:0000470 ... P17076 38632236
    891197 8v84:H (2.7) BS01 rna ? GO:0002181 ... P05738 38632236
    891198 8v84:I (2.7) BS01 rna ? GO:0003674 ... P53136 38632236
    891199 8v84:J (2.7) BS01 rna ? GO:0000280 ... P36049 38632236
    891200 8v84:K (2.7) BS01 rna ? GO:0000463 ... P38779 38632236

    Reference:
  • Chengxin Zhang, Xi Zhang, Lydia Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).