SEQ2FUN

BioLiP
Download all results in tab-seperated text for 942758 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.
  • Sort results by
    << < 4447 4448 4449 4450 4451 4452 4453 4454 4455 4456 4457 4458 4459 4460 4461 4462 4463 4464 4465 4466 4467 > >>
    Go to page

    # PDB
    (Resolution Å)
    Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    891201 8v84:L (2.7) BS01 rna ? GO:0002181 ... Q12690 38632236
    891202 8v84:L (2.7) BS02 rna ? GO:0002181 ... Q12690 38632236
    891203 8v84:M (2.7) BS01 rna ? GO:0000027 ... P36105 38632236
    891204 8v84:N (2.7) BS01 rna ? GO:0002181 ... P05748 38632236
    891205 8v84:N (2.7) BS02 rna ? GO:0002181 ... P05748 38632236
    891206 8v84:O (2.7) BS01 rna ? GO:0000470 ... P26784 38632236
    891207 8v84:P (2.7) BS01 rna ? GO:0000448 ... P05740 38632236
    891208 8v84:P (2.7) BS02 rna ? GO:0000448 ... P05740 38632236
    891209 8v84:Q (2.7) BS01 rna ? GO:0002181 ... P0CX49 38632236
    891210 8v84:R (2.7) BS01 rna ? GO:0000460 ... P10962 38632236
    891211 8v84:S (2.7) BS01 rna ? GO:0002181 ... P0CX23 38632236
    891212 8v84:V (2.7) BS01 rna ? GO:0002181 ... P0CX41 38632236
    891213 8v84:W (2.7) BS01 rna ? GO:0000027 ... P33201 38632236
    891214 8v84:Y (2.7) BS01 rna ? GO:0002181 ... P05743 38632236
    891215 8v84:Y (2.7) BS02 rna ? GO:0002181 ... P05743 38632236
    891216 8v84:Z (2.7) BS01 rna ? GO:0000027 ... P38789 38632236
    891217 8v84:a (2.7) BS01 rna ? GO:0000055 ... P0CX43 38632236
    891218 8v84:b (2.7) BS01 rna ? GO:0000054 ... Q02892 38632236
    891219 8v84:b (2.7) BS02 GDP ? GO:0000054 ... Q02892 38632236
    891220 8v84:b (2.7) BS03 MG ? GO:0000054 ... Q02892 38632236
    891221 8v84:e (2.7) BS01 rna ? GO:0002181 ... P38061 38632236
    891222 8v84:f (2.7) BS01 rna ? GO:0000027 ... P05744 38632236
    891223 8v84:h (2.7) BS01 rna ? GO:0000463 ... P0CX84 38632236
    891224 8v84:h (2.7) BS02 rna ? GO:0000463 ... P0CX84 38632236
    891225 8v84:i (2.7) BS01 rna ? GO:0002181 ... P05745 38632236
    891226 8v84:j (2.7) BS01 rna ? GO:0000448 ... P49166 38632236
    891227 8v84:j (2.7) BS02 rna ? GO:0000448 ... P49166 38632236
    891228 8v84:j (2.7) BS03 ZN ? GO:0000448 ... P49166 38632236
    891229 8v84:l (2.7) BS01 rna ? GO:0000463 ... Q08962 38632236
    891230 8v84:m (2.7) BS01 rna ? GO:0000463 ... Q04660 38632236
    891231 8v84:n (2.7) BS01 rna ? GO:0000462 ... P53261 38632236
    891232 8v84:n (2.7) BS02 rna ? GO:0000462 ... P53261 38632236
    891233 8v84:o (2.7) BS01 rna ? GO:0000463 ... P53927 38632236
    891234 8v84:q (2.7) BS01 rna 2.1.1.310 GO:0000463 ... P40991 38632236
    891235 8v84:r (2.7) BS01 rna ? GO:0000460 ... P40078 38632236
    891236 8v84:t (2.7) BS01 rna ? GO:0000463 ... P40693 38632236
    891237 8v84:t (2.7) BS02 rna ? GO:0000463 ... P40693 38632236
    891238 8v84:u (2.7) BS01 rna ? GO:0001671 ... Q07915 38632236
    891239 8v84:u (2.7) BS02 ZN ? GO:0001671 ... Q07915 38632236
    891240 8v84:v (2.7) BS01 rna ? GO:0003674 ... P40007 38632236
    891241 8v84:v (2.7) BS02 rna ? GO:0003674 ... P40007 38632236
    891242 8v84:w (2.7) BS01 rna ? GO:0003674 ... P35178 38632236
    891243 8v84:x (2.7) BS01 rna ? GO:0000055 ... P38805 38632236
    891244 8v84:y (2.7) BS01 rna ? GO:0000054 ... Q12522 38632236
    891245 8v86:A (2.47) BS01 9Z9 ? GO:0004888 ... P0ABE7
    P36544
    38382524
    891246 8v86:A (2.47) BS02 YLI ? GO:0004888 ... P0ABE7
    P36544
    38382524
    891247 8v86:A (2.47) BS03 YLI ? GO:0004888 ... P0ABE7
    P36544
    38382524
    891248 8v86:B (2.47) BS01 YLI ? GO:0004888 ... P0ABE7
    P36544
    38382524
    891249 8v86:B (2.47) BS02 9Z9 ? GO:0004888 ... P0ABE7
    P36544
    38382524
    891250 8v86:B (2.47) BS03 YLI ? GO:0004888 ... P0ABE7
    P36544
    38382524
    891251 8v86:C (2.47) BS01 YLI ? GO:0004888 ... P0ABE7
    P36544
    38382524
    891252 8v86:C (2.47) BS02 9Z9 ? GO:0004888 ... P0ABE7
    P36544
    38382524
    891253 8v86:C (2.47) BS03 YLI ? GO:0004888 ... P0ABE7
    P36544
    38382524
    891254 8v86:D (2.47) BS01 YLI ? GO:0004888 ... P0ABE7
    P36544
    38382524
    891255 8v86:D (2.47) BS02 9Z9 ? GO:0004888 ... P0ABE7
    P36544
    38382524
    891256 8v86:D (2.47) BS03 YLI ? GO:0004888 ... P0ABE7
    P36544
    38382524
    891257 8v86:E (2.47) BS01 YLI ? GO:0004888 ... P0ABE7
    P36544
    38382524
    891258 8v86:E (2.47) BS02 YLI ? GO:0004888 ... P0ABE7
    P36544
    38382524
    891259 8v86:E (2.47) BS03 9Z9 ? GO:0004888 ... P0ABE7
    P36544
    38382524
    891260 8v87:3 (2.66) BS01 rna 3.6.4.13 GO:0000463 ... Q12389 38632236
    891261 8v87:3 (2.66) BS02 ADP 3.6.4.13 GO:0000463 ... Q12389 38632236
    891262 8v87:7 (2.66) BS01 rna ? GO:0000055 ... P43586 38632236
    891263 8v87:8 (2.66) BS01 rna ? GO:0003729 ... P39744 38632236
    891264 8v87:A (2.66) BS01 rna ? GO:0000027 ... Q08235 38632236
    891265 8v87:B (2.66) BS01 rna ? GO:0000027 ... P14126 38632236
    891266 8v87:C (2.66) BS01 rna ? GO:0002181 ... P10664 38632236
    891267 8v87:C (2.66) BS02 rna ? GO:0002181 ... P10664 38632236
    891268 8v87:D (2.66) BS01 rna 3.6.4.13 GO:0000462 ... Q03532 38632236
    891269 8v87:E (2.66) BS01 rna ? GO:0000027 ... Q02326 38632236
    891270 8v87:F (2.66) BS01 rna ? GO:0000463 ... P05737 38632236
    891271 8v87:G (2.66) BS01 rna ? GO:0000470 ... P17076 38632236
    891272 8v87:G (2.66) BS02 rna ? GO:0000470 ... P17076 38632236
    891273 8v87:G (2.66) BS03 rna ? GO:0000470 ... P17076 38632236
    891274 8v87:H (2.66) BS01 rna ? GO:0002181 ... P05738 38632236
    891275 8v87:I (2.66) BS01 rna ? GO:0003682 ... Q07896 38632236
    891276 8v87:J (2.66) BS01 rna ? GO:0000280 ... P36049 38632236
    891277 8v87:K (2.66) BS01 rna ? GO:0000463 ... P38779 38632236
    891278 8v87:L (2.66) BS01 rna ? GO:0002181 ... Q12690 38632236
    891279 8v87:L (2.66) BS02 rna ? GO:0002181 ... Q12690 38632236
    891280 8v87:M (2.66) BS01 rna ? GO:0000027 ... P36105 38632236
    891281 8v87:N (2.66) BS01 rna ? GO:0002181 ... P05748 38632236
    891282 8v87:N (2.66) BS02 rna ? GO:0002181 ... P05748 38632236
    891283 8v87:O (2.66) BS01 rna ? GO:0000470 ... P26784 38632236
    891284 8v87:P (2.66) BS01 rna ? GO:0000448 ... P05740 38632236
    891285 8v87:P (2.66) BS02 rna ? GO:0000448 ... P05740 38632236
    891286 8v87:Q (2.66) BS01 rna ? GO:0002181 ... P0CX49 38632236
    891287 8v87:R (2.66) BS01 rna ? GO:0002181 ... P0CX82 38632236
    891288 8v87:S (2.66) BS01 rna ? GO:0002181 ... P0CX23 38632236
    891289 8v87:U (2.66) BS01 rna ? GO:0002181 ... P05749 38632236
    891290 8v87:V (2.66) BS01 rna ? GO:0002181 ... P0CX41 38632236
    891291 8v87:W (2.66) BS01 rna ? GO:0000027 ... P33201 38632236
    891292 8v87:X (2.66) BS01 rna ? GO:0000027 ... P04456 38632236
    891293 8v87:X (2.66) BS02 rna ? GO:0000027 ... P04456 38632236
    891294 8v87:Y (2.66) BS01 rna ? GO:0002181 ... P05743 38632236
    891295 8v87:Y (2.66) BS02 rna ? GO:0002181 ... P05743 38632236
    891296 8v87:Z (2.66) BS01 rna ? GO:0002181 ... P0C2H6 38632236
    891297 8v87:a (2.66) BS01 rna ? GO:0000055 ... P0CX43 38632236
    891298 8v87:b (2.66) BS01 rna ? GO:0000054 ... Q02892 38632236
    891299 8v87:b (2.66) BS02 GDP ? GO:0000054 ... Q02892 38632236
    891300 8v87:c (2.66) BS01 rna ? GO:0002181 ... P14120 38632236
    891301 8v87:d (2.66) BS01 rna ? GO:0002181 ... P0C2H8 38632236
    891302 8v87:e (2.66) BS01 rna ? GO:0002181 ... P38061 38632236
    891303 8v87:f (2.66) BS01 rna ? GO:0000027 ... P05744 38632236
    891304 8v87:g (2.66) BS01 rna ? GO:0002181 ... P87262 38632236
    891305 8v87:g (2.66) BS02 ZN ? GO:0002181 ... P87262 38632236
    891306 8v87:h (2.66) BS01 rna ? GO:0000463 ... P0CX84 38632236
    891307 8v87:h (2.66) BS02 rna ? GO:0000463 ... P0CX84 38632236
    891308 8v87:i (2.66) BS01 rna ? GO:0002181 ... P05745 38632236
    891309 8v87:j (2.66) BS01 rna ? GO:0000448 ... P49166 38632236
    891310 8v87:j (2.66) BS02 rna ? GO:0000448 ... P49166 38632236
    891311 8v87:j (2.66) BS03 ZN ? GO:0000448 ... P49166 38632236
    891312 8v87:k (2.66) BS01 rna ? GO:0002181 ... P49167 38632236
    891313 8v87:l (2.66) BS01 rna ? GO:0000463 ... Q08962 38632236
    891314 8v87:m (2.66) BS01 rna ? GO:0000463 ... Q04660 38632236
    891315 8v87:m (2.66) BS02 rna ? GO:0000463 ... Q04660 38632236
    891316 8v87:n (2.66) BS01 rna ? GO:0000462 ... P53261 38632236
    891317 8v87:n (2.66) BS02 rna ? GO:0000462 ... P53261 38632236
    891318 8v87:o (2.66) BS01 rna ? GO:0000463 ... P53927 38632236
    891319 8v87:q (2.66) BS01 rna 2.1.1.310 GO:0000463 ... P40991 38632236
    891320 8v87:r (2.66) BS01 rna ? GO:0000460 ... P40078 38632236
    891321 8v87:s (2.66) BS01 rna ? GO:0000055 ... P40010 38632236
    891322 8v87:t (2.66) BS01 rna ? GO:0000463 ... P40693 38632236
    891323 8v87:t (2.66) BS02 rna ? GO:0000463 ... P40693 38632236
    891324 8v87:t (2.66) BS03 rna ? GO:0000463 ... P40693 38632236
    891325 8v87:u (2.66) BS01 rna ? GO:0001671 ... Q07915 38632236
    891326 8v87:v (2.66) BS01 rna ? GO:0003674 ... P40007 38632236
    891327 8v87:v (2.66) BS02 rna ? GO:0003674 ... P40007 38632236
    891328 8v87:w (2.66) BS01 rna 2.1.1.167 GO:0000451 ... P25582 38632236
    891329 8v87:y (2.66) BS01 rna ? GO:0000054 ... Q12522 38632236
    891330 8v87:z (2.66) BS01 rna ? GO:0003674 ... P38202 38632236
    891331 8v88:A (2.3) BS01 CA ? GO:0004888 ... P0ABE7
    P36544
    38382524
    891332 8v88:A (2.3) BS02 9Z9 ? GO:0004888 ... P0ABE7
    P36544
    38382524
    891333 8v88:A (2.3) BS03 EPJ ? GO:0004888 ... P0ABE7
    P36544
    38382524
    891334 8v88:A (2.3) BS04 YLI ? GO:0004888 ... P0ABE7
    P36544
    38382524
    891335 8v88:A (2.3) BS05 EPJ ? GO:0004888 ... P0ABE7
    P36544
    38382524
    891336 8v88:A (2.3) BS06 YLI ? GO:0004888 ... P0ABE7
    P36544
    38382524
    891337 8v88:B (2.3) BS01 EPJ ? GO:0004888 ... P0ABE7
    P36544
    38382524
    891338 8v88:B (2.3) BS02 YLI ? GO:0004888 ... P0ABE7
    P36544
    38382524
    891339 8v88:B (2.3) BS03 CA ? GO:0004888 ... P0ABE7
    P36544
    38382524
    891340 8v88:B (2.3) BS04 9Z9 ? GO:0004888 ... P0ABE7
    P36544
    38382524
    891341 8v88:B (2.3) BS05 EPJ ? GO:0004888 ... P0ABE7
    P36544
    38382524
    891342 8v88:B (2.3) BS06 YLI ? GO:0004888 ... P0ABE7
    P36544
    38382524
    891343 8v88:C (2.3) BS01 EPJ ? GO:0004888 ... P0ABE7
    P36544
    38382524
    891344 8v88:C (2.3) BS02 YLI ? GO:0004888 ... P0ABE7
    P36544
    38382524
    891345 8v88:C (2.3) BS03 CA ? GO:0004888 ... P0ABE7
    P36544
    38382524
    891346 8v88:C (2.3) BS04 9Z9 ? GO:0004888 ... P0ABE7
    P36544
    38382524
    891347 8v88:C (2.3) BS05 EPJ ? GO:0004888 ... P0ABE7
    P36544
    38382524
    891348 8v88:C (2.3) BS06 YLI ? GO:0004888 ... P0ABE7
    P36544
    38382524
    891349 8v88:D (2.3) BS01 EPJ ? GO:0004888 ... P0ABE7
    P36544
    38382524
    891350 8v88:D (2.3) BS02 YLI ? GO:0004888 ... P0ABE7
    P36544
    38382524
    891351 8v88:D (2.3) BS03 CA ? GO:0004888 ... P0ABE7
    P36544
    38382524
    891352 8v88:D (2.3) BS04 9Z9 ? GO:0004888 ... P0ABE7
    P36544
    38382524
    891353 8v88:D (2.3) BS05 EPJ ? GO:0004888 ... P0ABE7
    P36544
    38382524
    891354 8v88:D (2.3) BS06 YLI ? GO:0004888 ... P0ABE7
    P36544
    38382524
    891355 8v88:E (2.3) BS01 EPJ ? GO:0004888 ... P0ABE7
    P36544
    38382524
    891356 8v88:E (2.3) BS02 YLI ? GO:0004888 ... P0ABE7
    P36544
    38382524
    891357 8v88:E (2.3) BS03 CA ? GO:0004888 ... P0ABE7
    P36544
    38382524
    891358 8v88:E (2.3) BS04 9Z9 ? GO:0004888 ... P0ABE7
    P36544
    38382524
    891359 8v88:E (2.3) BS05 EPJ ? GO:0004888 ... P0ABE7
    P36544
    38382524
    891360 8v88:E (2.3) BS06 YLI ? GO:0004888 ... P0ABE7
    P36544
    38382524
    891361 8v89:A (2.53) BS01 9Z9 ? GO:0004888 ... P0ABE7
    P36544
    38382524
    891362 8v89:B (2.53) BS01 9Z9 ? GO:0004888 ... P0ABE7
    P36544
    38382524
    891363 8v89:C (2.53) BS01 9Z9 ? GO:0004888 ... P0ABE7
    P36544
    38382524
    891364 8v89:D (2.53) BS01 9Z9 ? GO:0004888 ... P0ABE7
    P36544
    38382524
    891365 8v89:E (2.53) BS01 9Z9 ? GO:0004888 ... P0ABE7
    P36544
    38382524
    891366 8v8a:A (2.19) BS01 CA ? GO:0004888 ... P0ABE7
    P36544
    38382524
    891367 8v8a:A (2.19) BS02 9Z9 ? GO:0004888 ... P0ABE7
    P36544
    38382524
    891368 8v8a:A (2.19) BS03 EPJ ? GO:0004888 ... P0ABE7
    P36544
    38382524
    891369 8v8a:A (2.19) BS04 I34 ? GO:0004888 ... P0ABE7
    P36544
    38382524
    891370 8v8a:A (2.19) BS05 I34 ? GO:0004888 ... P0ABE7
    P36544
    38382524
    891371 8v8a:A (2.19) BS06 EPJ ? GO:0004888 ... P0ABE7
    P36544
    38382524
    891372 8v8a:B (2.19) BS01 EPJ ? GO:0004888 ... P0ABE7
    P36544
    38382524
    891373 8v8a:B (2.19) BS02 I34 ? GO:0004888 ... P0ABE7
    P36544
    38382524
    891374 8v8a:B (2.19) BS03 CA ? GO:0004888 ... P0ABE7
    P36544
    38382524
    891375 8v8a:B (2.19) BS04 9Z9 ? GO:0004888 ... P0ABE7
    P36544
    38382524
    891376 8v8a:B (2.19) BS05 EPJ ? GO:0004888 ... P0ABE7
    P36544
    38382524
    891377 8v8a:B (2.19) BS06 I34 ? GO:0004888 ... P0ABE7
    P36544
    38382524
    891378 8v8a:C (2.19) BS01 EPJ ? GO:0004888 ... P0ABE7
    P36544
    38382524
    891379 8v8a:C (2.19) BS02 I34 ? GO:0004888 ... P0ABE7
    P36544
    38382524
    891380 8v8a:C (2.19) BS03 CA ? GO:0004888 ... P0ABE7
    P36544
    38382524
    891381 8v8a:C (2.19) BS04 9Z9 ? GO:0004888 ... P0ABE7
    P36544
    38382524
    891382 8v8a:C (2.19) BS05 EPJ ? GO:0004888 ... P0ABE7
    P36544
    38382524
    891383 8v8a:C (2.19) BS06 I34 ? GO:0004888 ... P0ABE7
    P36544
    38382524
    891384 8v8a:D (2.19) BS01 EPJ ? GO:0004888 ... P0ABE7
    P36544
    38382524
    891385 8v8a:D (2.19) BS02 I34 ? GO:0004888 ... P0ABE7
    P36544
    38382524
    891386 8v8a:D (2.19) BS03 CA ? GO:0004888 ... P0ABE7
    P36544
    38382524
    891387 8v8a:D (2.19) BS04 9Z9 ? GO:0004888 ... P0ABE7
    P36544
    38382524
    891388 8v8a:D (2.19) BS05 EPJ ? GO:0004888 ... P0ABE7
    P36544
    38382524
    891389 8v8a:D (2.19) BS06 I34 ? GO:0004888 ... P0ABE7
    P36544
    38382524
    891390 8v8a:E (2.19) BS01 I34 ? GO:0004888 ... P0ABE7
    P36544
    38382524
    891391 8v8a:E (2.19) BS02 EPJ ? GO:0004888 ... P0ABE7
    P36544
    38382524
    891392 8v8a:E (2.19) BS03 I34 ? GO:0004888 ... P0ABE7
    P36544
    38382524
    891393 8v8a:E (2.19) BS04 CA ? GO:0004888 ... P0ABE7
    P36544
    38382524
    891394 8v8a:E (2.19) BS05 9Z9 ? GO:0004888 ... P0ABE7
    P36544
    38382524
    891395 8v8a:E (2.19) BS06 EPJ ? GO:0004888 ... P0ABE7
    P36544
    38382524
    891396 8v8c:A (3.29) BS01 EPJ ? GO:0004888 ... P0ABE7
    P36544
    38382524
    891397 8v8c:A (3.29) BS02 I34 ? GO:0004888 ... P0ABE7
    P36544
    38382524
    891398 8v8c:A (3.29) BS03 EPJ ? GO:0004888 ... P0ABE7
    P36544
    38382524
    891399 8v8c:A (3.29) BS04 I34 ? GO:0004888 ... P0ABE7
    P36544
    38382524
    891400 8v8c:B (3.29) BS01 EPJ ? GO:0004888 ... P0ABE7
    P36544
    38382524

    Reference:
  • Chengxin Zhang, Xi Zhang, Lydia Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).