SEQ2FUN

BioLiP
Download all results in tab-seperated text for 1072681 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
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  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
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    # PDB
    (Resolution Å)
    Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    891201 8ud7:2S (2.55) BS02 rna ? GO:0003735 ... Q5SHQ4 38359125
    891202 8ud7:2T (2.55) BS01 rna ? GO:0003735 ... P60490 38359125
    891203 8ud7:2T (2.55) BS02 rna ? GO:0003735 ... P60490 38359125
    891204 8ud7:2U (2.55) BS01 rna ? GO:0000027 ... P60491 38359125
    891205 8ud7:2U (2.55) BS02 MG ? GO:0000027 ... P60491 38359125
    891206 8ud7:2V (2.55) BS01 rna ? GO:0003723 ... P60492 38359125
    891207 8ud7:2V (2.55) BS02 MG ? GO:0003723 ... P60492 38359125
    891208 8ud7:2W (2.55) BS01 rna ? GO:0003735 ... Q5SHP3 38359125
    891209 8ud7:2W (2.55) BS02 MG ? GO:0003735 ... Q5SHP3 38359125
    891210 8ud7:2W (2.55) BS03 MG ? GO:0003735 ... Q5SHP3 38359125
    891211 8ud7:2X (2.55) BS01 rna ? GO:0003735 ... Q5SHP0 38359125
    891212 8ud7:2X (2.55) BS02 MG ? GO:0003735 ... Q5SHP0 38359125
    891213 8ud7:2Y (2.55) BS01 rna ? GO:0003723 ... Q5SHP9 38359125
    891214 8ud7:2Y (2.55) BS02 ZN ? GO:0003723 ... Q5SHP9 38359125
    891215 8ud7:2Z (2.55) BS01 rna ? GO:0003723 ... Q5SHZ1 38359125
    891216 8ud7:2Z (2.55) BS02 rna ? GO:0003723 ... Q5SHZ1 38359125
    891217 8ud7:2b (2.55) BS01 rna ? GO:0003735 ... P80371 38359125
    891218 8ud7:2c (2.55) BS01 rna ? GO:0003676 ... P80372 38359125
    891219 8ud7:2d (2.55) BS01 rna ? GO:0003723 ... P80373 38359125
    891220 8ud7:2d (2.55) BS02 SF4 ? GO:0003723 ... P80373 38359125
    891221 8ud7:2e (2.55) BS01 rna ? GO:0003723 ... Q5SHQ5 38359125
    891222 8ud7:2e (2.55) BS02 MG ? GO:0003723 ... Q5SHQ5 38359125
    891223 8ud7:2f (2.55) BS01 rna ? GO:0003735 ... Q5SLP8 38359125
    891224 8ud7:2f (2.55) BS02 MG ? GO:0003735 ... Q5SLP8 38359125
    891225 8ud7:2g (2.55) BS01 rna ? GO:0000049 ... P17291 38359125
    891226 8ud7:2g (2.55) BS02 rna ? GO:0000049 ... P17291 38359125
    891227 8ud7:2h (2.55) BS01 rna ? GO:0003735 ... P0DOY9 38359125
    891228 8ud7:2i (2.55) BS01 rna ? GO:0003723 ... P80374 38359125
    891229 8ud7:2i (2.55) BS02 rna ? GO:0003723 ... P80374 38359125
    891230 8ud7:2j (2.55) BS01 rna ? GO:0000049 ... Q5SHN7 38359125
    891231 8ud7:2k (2.55) BS01 rna ? GO:0003735 ... P80376 38359125
    891232 8ud7:2k (2.55) BS02 MG ? GO:0003735 ... P80376 38359125
    891233 8ud7:2l (2.55) BS01 rna ? GO:0000049 ... Q5SHN3 38359125
    891234 8ud7:2l (2.55) BS02 MG ? GO:0000049 ... Q5SHN3 38359125
    891235 8ud7:2l (2.55) BS03 MG ? GO:0000049 ... Q5SHN3 38359125
    891236 8ud7:2l (2.55) BS04 MG ? GO:0000049 ... Q5SHN3 38359125
    891237 8ud7:2m (2.55) BS01 rna ? GO:0000049 ... P80377 38359125
    891238 8ud7:2m (2.55) BS02 rna ? GO:0000049 ... P80377 38359125
    891239 8ud7:2m (2.55) BS03 rna ? GO:0000049 ... P80377 38359125
    891240 8ud7:2n (2.55) BS01 rna ? GO:0003735 ... P0DOY6 38359125
    891241 8ud7:2n (2.55) BS02 ZN ? GO:0003735 ... P0DOY6 38359125
    891242 8ud7:2o (2.55) BS01 rna ? GO:0003735 ... Q5SJ76 38359125
    891243 8ud7:2o (2.55) BS02 rna ? GO:0003735 ... Q5SJ76 38359125
    891244 8ud7:2p (2.55) BS01 rna ? GO:0003735 ... Q5SJH3 38359125
    891245 8ud7:2q (2.55) BS01 rna ? GO:0003735 ... P0DOY7 38359125
    891246 8ud7:2q (2.55) BS02 MG ? GO:0003735 ... P0DOY7 38359125
    891247 8ud7:2r (2.55) BS01 rna ? GO:0003735 ... Q5SLQ0 38359125
    891248 8ud7:2s (2.55) BS01 rna ? GO:0000028 ... Q5SHP2 38359125
    891249 8ud7:2t (2.55) BS01 rna ? GO:0003723 ... P80380 38359125
    891250 8ud7:2t (2.55) BS02 MG ? GO:0003723 ... P80380 38359125
    891251 8ud8:10 (2.6) BS01 rna ? GO:0003735 ... P60493 38359125
    891252 8ud8:10 (2.6) BS02 rna ? GO:0003735 ... P60493 38359125
    891253 8ud8:10 (2.6) BS03 rna ? GO:0003735 ... P60493 38359125
    891254 8ud8:10 (2.6) BS04 MG ? GO:0003735 ... P60493 38359125
    891255 8ud8:10 (2.6) BS05 MG ? GO:0003735 ... P60493 38359125
    891256 8ud8:11 (2.6) BS01 rna ? GO:0003735 ... P60494 38359125
    891257 8ud8:11 (2.6) BS02 rna ? GO:0003735 ... P60494 38359125
    891258 8ud8:11 (2.6) BS03 MG ? GO:0003735 ... P60494 38359125
    891259 8ud8:12 (2.6) BS01 rna ? GO:0003735 ... Q5SHP6 38359125
    891260 8ud8:12 (2.6) BS02 MG ? GO:0003735 ... Q5SHP6 38359125
    891261 8ud8:13 (2.6) BS01 rna ? GO:0003735 ... Q5SHQ6 38359125
    891262 8ud8:13 (2.6) BS02 rna ? GO:0003735 ... Q5SHQ6 38359125
    891263 8ud8:13 (2.6) BS03 MG ? GO:0003735 ... Q5SHQ6 38359125
    891264 8ud8:14 (2.6) BS01 rna ? GO:0003735 ... Q5SJE1 38359125
    891265 8ud8:14 (2.6) BS02 ZN ? GO:0003735 ... Q5SJE1 38359125
    891266 8ud8:15 (2.6) BS01 rna ? GO:0003735 ... P80339 38359125
    891267 8ud8:15 (2.6) BS02 MG ? GO:0003735 ... P80339 38359125
    891268 8ud8:15 (2.6) BS03 MG ? GO:0003735 ... P80339 38359125
    891269 8ud8:15 (2.6) BS04 MG ? GO:0003735 ... P80339 38359125
    891270 8ud8:15 (2.6) BS05 ZN ? GO:0003735 ... P80339 38359125
    891271 8ud8:16 (2.6) BS01 rna ? GO:0003735 ... P35871 38359125
    891272 8ud8:16 (2.6) BS02 MG ? GO:0003735 ... P35871 38359125
    891273 8ud8:16 (2.6) BS03 ZN ? GO:0003735 ... P35871 38359125
    891274 8ud8:17 (2.6) BS01 rna ? GO:0003735 ... P80340 38359125
    891275 8ud8:17 (2.6) BS02 MG ? GO:0003735 ... P80340 38359125
    891276 8ud8:17 (2.6) BS03 MG ? GO:0003735 ... P80340 38359125
    891277 8ud8:17 (2.6) BS04 MG ? GO:0003735 ... P80340 38359125
    891278 8ud8:18 (2.6) BS01 rna ? GO:0003735 ... Q5SKU1 38359125
    891279 8ud8:18 (2.6) BS02 MG ? GO:0003735 ... Q5SKU1 38359125
    891280 8ud8:18 (2.6) BS03 MG ? GO:0003735 ... Q5SKU1 38359125
    891281 8ud8:18 (2.6) BS04 MG ? GO:0003735 ... Q5SKU1 38359125
    891282 8ud8:19 (2.6) BS01 rna ? GO:0003735 ... Q5SHR2 38359125
    891283 8ud8:19 (2.6) BS02 ZN ? GO:0003735 ... Q5SHR2 38359125
    891284 8ud8:1D (2.6) BS01 rna ? GO:0002181 ... P60405 38359125
    891285 8ud8:1D (2.6) BS02 rna ? GO:0002181 ... P60405 38359125
    891286 8ud8:1D (2.6) BS03 MG ? GO:0002181 ... P60405 38359125
    891287 8ud8:1D (2.6) BS04 MG ? GO:0002181 ... P60405 38359125
    891288 8ud8:1D (2.6) BS05 MG ? GO:0002181 ... P60405 38359125
    891289 8ud8:1D (2.6) BS06 MG ? GO:0002181 ... P60405 38359125
    891290 8ud8:1D (2.6) BS07 MG ? GO:0002181 ... P60405 38359125
    891291 8ud8:1D (2.6) BS08 MG ? GO:0002181 ... P60405 38359125
    891292 8ud8:1D (2.6) BS09 MG ? GO:0002181 ... P60405 38359125
    891293 8ud8:1D (2.6) BS10 MG ? GO:0002181 ... P60405 38359125
    891294 8ud8:1D (2.6) BS11 MG ? GO:0002181 ... P60405 38359125
    891295 8ud8:1D (2.6) BS12 MG ? GO:0002181 ... P60405 38359125
    891296 8ud8:1E (2.6) BS01 rna ? GO:0003735 ... Q5SHN8 38359125
    891297 8ud8:1E (2.6) BS02 MG ? GO:0003735 ... Q5SHN8 38359125
    891298 8ud8:1E (2.6) BS03 MG ? GO:0003735 ... Q5SHN8 38359125
    891299 8ud8:1E (2.6) BS04 MG ? GO:0003735 ... Q5SHN8 38359125
    891300 8ud8:1E (2.6) BS05 MG ? GO:0003735 ... Q5SHN8 38359125
    891301 8ud8:1E (2.6) BS06 MG ? GO:0003735 ... Q5SHN8 38359125
    891302 8ud8:1F (2.6) BS01 rna ? GO:0003735 ... Q5SHN9 38359125
    891303 8ud8:1F (2.6) BS02 MG ? GO:0003735 ... Q5SHN9 38359125
    891304 8ud8:1F (2.6) BS03 MG ? GO:0003735 ... Q5SHN9 38359125
    891305 8ud8:1F (2.6) BS04 MG ? GO:0003735 ... Q5SHN9 38359125
    891306 8ud8:1F (2.6) BS05 MG ? GO:0003735 ... Q5SHN9 38359125
    891307 8ud8:1F (2.6) BS06 MG ? GO:0003735 ... Q5SHN9 38359125
    891308 8ud8:1F (2.6) BS07 MG ? GO:0003735 ... Q5SHN9 38359125
    891309 8ud8:1F (2.6) BS08 MG ? GO:0003735 ... Q5SHN9 38359125
    891310 8ud8:1F (2.6) BS09 MG ? GO:0003735 ... Q5SHN9 38359125
    891311 8ud8:1G (2.6) BS01 rna ? GO:0000049 ... Q5SHQ0 38359125
    891312 8ud8:1G (2.6) BS02 rna ? GO:0000049 ... Q5SHQ0 38359125
    891313 8ud8:1G (2.6) BS03 rna ? GO:0000049 ... Q5SHQ0 38359125
    891314 8ud8:1G (2.6) BS04 MG ? GO:0000049 ... Q5SHQ0 38359125
    891315 8ud8:1G (2.6) BS05 MG ? GO:0000049 ... Q5SHQ0 38359125
    891316 8ud8:1H (2.6) BS01 rna ? GO:0002181 ... P0DOY8 38359125
    891317 8ud8:1I (2.6) BS01 rna ? GO:0003735 ... Q5SLQ1 38359125
    891318 8ud8:1I (2.6) BS02 MG ? GO:0003735 ... Q5SLQ1 38359125
    891319 8ud8:1N (2.6) BS01 rna ? GO:0003729 ... P60488 38359125
    891320 8ud8:1N (2.6) BS02 MG ? GO:0003729 ... P60488 38359125
    891321 8ud8:1N (2.6) BS03 MG ? GO:0003729 ... P60488 38359125
    891322 8ud8:1N (2.6) BS04 MG ? GO:0003729 ... P60488 38359125
    891323 8ud8:1N (2.6) BS05 MG ? GO:0003729 ... P60488 38359125
    891324 8ud8:1O (2.6) BS01 rna ? GO:0003735 ... Q5SHP8 38359125
    891325 8ud8:1O (2.6) BS02 rna ? GO:0003735 ... Q5SHP8 38359125
    891326 8ud8:1O (2.6) BS03 MG ? GO:0003735 ... Q5SHP8 38359125
    891327 8ud8:1O (2.6) BS04 MG ? GO:0003735 ... Q5SHP8 38359125
    891328 8ud8:1P (2.6) BS01 rna ? GO:0003735 ... Q5SHQ7 38359125
    891329 8ud8:1P (2.6) BS02 MG ? GO:0003735 ... Q5SHQ7 38359125
    891330 8ud8:1P (2.6) BS03 MG ? GO:0003735 ... Q5SHQ7 38359125
    891331 8ud8:1P (2.6) BS04 MG ? GO:0003735 ... Q5SHQ7 38359125
    891332 8ud8:1P (2.6) BS05 MG ? GO:0003735 ... Q5SHQ7 38359125
    891333 8ud8:1P (2.6) BS06 MG ? GO:0003735 ... Q5SHQ7 38359125
    891334 8ud8:1Q (2.6) BS01 rna ? GO:0003735 ... P60489 38359125
    891335 8ud8:1Q (2.6) BS02 rna ? GO:0003735 ... P60489 38359125
    891336 8ud8:1Q (2.6) BS03 rna ? GO:0003735 ... P60489 38359125
    891337 8ud8:1Q (2.6) BS04 MG ? GO:0003735 ... P60489 38359125
    891338 8ud8:1Q (2.6) BS05 MG ? GO:0003735 ... P60489 38359125
    891339 8ud8:1Q (2.6) BS06 MG ? GO:0003735 ... P60489 38359125
    891340 8ud8:1R (2.6) BS01 rna ? GO:0003735 ... Q9Z9H5 38359125
    891341 8ud8:1R (2.6) BS02 MG ? GO:0003735 ... Q9Z9H5 38359125
    891342 8ud8:1R (2.6) BS03 MG ? GO:0003735 ... Q9Z9H5 38359125
    891343 8ud8:1S (2.6) BS01 rna ? GO:0003735 ... Q5SHQ4 38359125
    891344 8ud8:1S (2.6) BS02 rna ? GO:0003735 ... Q5SHQ4 38359125
    891345 8ud8:1S (2.6) BS03 MG ? GO:0003735 ... Q5SHQ4 38359125
    891346 8ud8:1S (2.6) BS04 MG ? GO:0003735 ... Q5SHQ4 38359125
    891347 8ud8:1T (2.6) BS01 rna ? GO:0003735 ... P60490 38359125
    891348 8ud8:1T (2.6) BS02 rna ? GO:0003735 ... P60490 38359125
    891349 8ud8:1U (2.6) BS01 rna ? GO:0000027 ... P60491 38359125
    891350 8ud8:1U (2.6) BS02 MG ? GO:0000027 ... P60491 38359125
    891351 8ud8:1U (2.6) BS03 MG ? GO:0000027 ... P60491 38359125
    891352 8ud8:1U (2.6) BS04 MG ? GO:0000027 ... P60491 38359125
    891353 8ud8:1U (2.6) BS05 MG ? GO:0000027 ... P60491 38359125
    891354 8ud8:1U (2.6) BS06 MG ? GO:0000027 ... P60491 38359125
    891355 8ud8:1U (2.6) BS07 MG ? GO:0000027 ... P60491 38359125
    891356 8ud8:1U (2.6) BS08 MG ? GO:0000027 ... P60491 38359125
    891357 8ud8:1U (2.6) BS09 MG ? GO:0000027 ... P60491 38359125
    891358 8ud8:1U (2.6) BS10 MG ? GO:0000027 ... P60491 38359125
    891359 8ud8:1V (2.6) BS01 rna ? GO:0003723 ... P60492 38359125
    891360 8ud8:1V (2.6) BS02 MG ? GO:0003723 ... P60492 38359125
    891361 8ud8:1V (2.6) BS03 MG ? GO:0003723 ... P60492 38359125
    891362 8ud8:1V (2.6) BS04 MG ? GO:0003723 ... P60492 38359125
    891363 8ud8:1V (2.6) BS05 MG ? GO:0003723 ... P60492 38359125
    891364 8ud8:1V (2.6) BS06 MG ? GO:0003723 ... P60492 38359125
    891365 8ud8:1V (2.6) BS07 MG ? GO:0003723 ... P60492 38359125
    891366 8ud8:1W (2.6) BS01 rna ? GO:0003735 ... Q5SHP3 38359125
    891367 8ud8:1W (2.6) BS02 MG ? GO:0003735 ... Q5SHP3 38359125
    891368 8ud8:1W (2.6) BS03 MG ? GO:0003735 ... Q5SHP3 38359125
    891369 8ud8:1W (2.6) BS04 MG ? GO:0003735 ... Q5SHP3 38359125
    891370 8ud8:1W (2.6) BS05 MG ? GO:0003735 ... Q5SHP3 38359125
    891371 8ud8:1W (2.6) BS06 MG ? GO:0003735 ... Q5SHP3 38359125
    891372 8ud8:1X (2.6) BS01 rna ? GO:0003735 ... Q5SHP0 38359125
    891373 8ud8:1X (2.6) BS02 MG ? GO:0003735 ... Q5SHP0 38359125
    891374 8ud8:1X (2.6) BS03 MG ? GO:0003735 ... Q5SHP0 38359125
    891375 8ud8:1X (2.6) BS04 MG ? GO:0003735 ... Q5SHP0 38359125
    891376 8ud8:1Y (2.6) BS01 rna ? GO:0003723 ... Q5SHP9 38359125
    891377 8ud8:1Y (2.6) BS02 MG ? GO:0003723 ... Q5SHP9 38359125
    891378 8ud8:1Y (2.6) BS03 ZN ? GO:0003723 ... Q5SHP9 38359125
    891379 8ud8:1Z (2.6) BS01 rna ? GO:0003723 ... Q5SHZ1 38359125
    891380 8ud8:1Z (2.6) BS02 rna ? GO:0003723 ... Q5SHZ1 38359125
    891381 8ud8:1b (2.6) BS01 rna ? GO:0003735 ... P80371 38359125
    891382 8ud8:1c (2.6) BS01 rna ? GO:0003676 ... P80372 38359125
    891383 8ud8:1d (2.6) BS01 rna ? GO:0003723 ... P80373 38359125
    891384 8ud8:1d (2.6) BS02 SF4 ? GO:0003723 ... P80373 38359125
    891385 8ud8:1e (2.6) BS01 rna ? GO:0003723 ... Q5SHQ5 38359125
    891386 8ud8:1e (2.6) BS02 MG ? GO:0003723 ... Q5SHQ5 38359125
    891387 8ud8:1f (2.6) BS01 rna ? GO:0003735 ... Q5SLP8 38359125
    891388 8ud8:1f (2.6) BS02 MG ? GO:0003735 ... Q5SLP8 38359125
    891389 8ud8:1g (2.6) BS01 rna ? GO:0000049 ... P17291 38359125
    891390 8ud8:1g (2.6) BS02 rna ? GO:0000049 ... P17291 38359125
    891391 8ud8:1h (2.6) BS01 rna ? GO:0003735 ... P0DOY9 38359125
    891392 8ud8:1i (2.6) BS01 rna ? GO:0003723 ... P80374 38359125
    891393 8ud8:1i (2.6) BS02 rna ? GO:0003723 ... P80374 38359125
    891394 8ud8:1j (2.6) BS01 rna ? GO:0000049 ... Q5SHN7 38359125
    891395 8ud8:1k (2.6) BS01 rna ? GO:0003735 ... P80376 38359125
    891396 8ud8:1k (2.6) BS02 MG ? GO:0003735 ... P80376 38359125
    891397 8ud8:1l (2.6) BS01 rna ? GO:0000049 ... Q5SHN3 38359125
    891398 8ud8:1l (2.6) BS02 MG ? GO:0000049 ... Q5SHN3 38359125
    891399 8ud8:1m (2.6) BS01 rna ? GO:0000049 ... P80377 38359125
    891400 8ud8:1m (2.6) BS02 rna ? GO:0000049 ... P80377 38359125

    Reference:
  • Chengxin Zhang, Xi Zhang, Lydia Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).