SEQ2FUN

BioLiP
Download all results in tab-seperated text for 942758 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
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  • Hover over EC number to view the full name of enzymatic activity.
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    # PDB
    (Resolution Å)
    Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    891601 8v9k:R (3.1) BS02 rna ? GO:0003735 ... A0QV42 38355796
    891602 8v9k:S (3.1) BS01 rna ? GO:0000027 ... A0QYU6 38355796
    891603 8v9k:T (3.1) BS01 rna ? GO:0003723 ... A0R151 38355796
    891604 8v9k:U (3.1) BS01 rna ? GO:0003735 ... A0QSD6 38355796
    891605 8v9k:V (3.1) BS01 rna ? GO:0003735 ... A0QSD3 38355796
    891606 8v9k:W (3.1) BS01 rna ? GO:0003723 ... A0QSG0 38355796
    891607 8v9k:X (3.1) BS01 rna ? GO:0003723 ... A0R3D2 38355796
    891608 8v9k:X (3.1) BS02 rna ? GO:0003723 ... A0R3D2 38355796
    891609 8v9k:Y (3.1) BS01 rna ? GO:0003735 ... A0R150 38355796
    891610 8v9k:Z (3.1) BS01 rna ? GO:0003735 ... A0QV03 38355796
    891611 8v9k:Z (3.1) BS02 ZN ? GO:0003735 ... A0QV03 38355796
    891612 8v9k:b (3.1) BS01 rna ? GO:0003735 ... A0QVB8 38355796
    891613 8v9k:c (3.1) BS01 rna ? GO:0003676 ... A0QSD7 38355796
    891614 8v9k:d (3.1) BS01 rna ? GO:0003723 ... A0QSL7 38355796
    891615 8v9k:e (3.1) BS01 rna ? GO:0003723 ... A0QSG6 38355796
    891616 8v9k:f (3.1) BS01 rna ? GO:0003735 ... A0R7F9 38355796
    891617 8v9k:f (3.1) BS02 rna ? GO:0003735 ... A0R7F9 38355796
    891618 8v9k:g (3.1) BS01 rna ? GO:0000049 ... A0QS97 38355796
    891619 8v9k:h (3.1) BS01 rna ? GO:0003735 ... A0QSG3 38355796
    891620 8v9k:i (3.1) BS01 rna ? GO:0003723 ... A0QSP9 38355796
    891621 8v9k:j (3.1) BS01 rna ? GO:0000049 ... A0QSD0 38355796
    891622 8v9k:k (3.1) BS01 rna ? GO:0003735 ... A0QSL6 38355796
    891623 8v9k:l (3.1) BS01 rna ? GO:0000049 ... A0QS96 38355796
    891624 8v9k:m (3.1) BS01 rna ? GO:0000049 ... A0QSL5 38355796
    891625 8v9k:n (3.1) BS01 rna ? GO:0003735 ... A0QSG2 38355796
    891626 8v9k:o (3.1) BS01 rna ? GO:0003735 ... A0QVQ3 38355796
    891627 8v9k:o (3.1) BS02 rna ? GO:0003735 ... A0QVQ3 38355796
    891628 8v9k:p (3.1) BS01 rna ? GO:0003735 ... A0QV37 38355796
    891629 8v9k:q (3.1) BS01 rna ? GO:0003735 ... A0QSE0 38355796
    891630 8v9k:r (3.1) BS01 rna ? GO:0003735 ... A0R7F7 38355796
    891631 8v9k:s (3.1) BS01 rna ? GO:0000028 ... A0QSD5 38355796
    891632 8v9k:t (3.1) BS01 rna ? GO:0003723 ... A0R102 38355796
    891633 8v9k:u (3.1) BS01 rna N/A N/A A0QR10 38355796
    891634 8v9k:z (3.1) BS01 rna ? GO:0001666 ... P9WL63 38355796
    891635 8v9k:z (3.1) BS02 rna ? GO:0001666 ... P9WL63 38355796
    891636 8v9l:1 (3.0) BS01 rna ? GO:0003735 ... A0QSD9 38355796
    891637 8v9l:2 (3.0) BS01 rna ? GO:0003735 ... A0QSG7 38355796
    891638 8v9l:2 (3.0) BS02 rna ? GO:0003735 ... A0QSG7 38355796
    891639 8v9l:3 (3.0) BS01 rna ? GO:0003735 ... A0R215 38355796
    891640 8v9l:4 (3.0) BS01 rna ? GO:0003735 ... A0R3I9 38355796
    891641 8v9l:5 (3.0) BS01 rna ? GO:0003735 ... A0QS39 38355796
    891642 8v9l:5 (3.0) BS02 ZN ? GO:0003735 ... A0QS39 38355796
    891643 8v9l:6 (3.0) BS01 rna ? GO:0003735 ... A0R7K0 38355796
    891644 8v9l:7 (3.0) BS01 rna ? GO:0003735 ... A0QYU7 38355796
    891645 8v9l:8 (3.0) BS01 rna ? GO:0003735 ... A0QSL4 38355796
    891646 8v9l:C (3.0) BS01 rna ? GO:0002181 ... A0QSD4 38355796
    891647 8v9l:D (3.0) BS01 rna ? GO:0003735 ... A0QSD1 38355796
    891648 8v9l:E (3.0) BS01 rna ? GO:0003735 ... A0QSD2 38355796
    891649 8v9l:F (3.0) BS01 rna ? GO:0000049 ... A0QSG1 38355796
    891650 8v9l:F (3.0) BS02 rna ? GO:0000049 ... A0QSG1 38355796
    891651 8v9l:G (3.0) BS01 rna ? GO:0002181 ... A0QSG4 38355796
    891652 8v9l:H (3.0) BS01 rna ? GO:0003735 ... A0R7F6 38355796
    891653 8v9l:I (3.0) BS01 rna ? GO:0003735 ... A0QS62 38355796
    891654 8v9l:J (3.0) BS01 rna ? GO:0003735 ... A0QS45 38355796
    891655 8v9l:L (3.0) BS01 rna ? GO:0003729 ... A0QSP8 38355796
    891656 8v9l:M (3.0) BS01 rna ? GO:0003735 ... A0QSF9 38355796
    891657 8v9l:M (3.0) BS02 rna ? GO:0003735 ... A0QSF9 38355796
    891658 8v9l:N (3.0) BS01 rna ? GO:0003735 ... A0QSG8 38355796
    891659 8v9l:O (3.0) BS01 rna ? GO:0000049 ... A0QSD8 38355796
    891660 8v9l:P (3.0) BS01 rna ? GO:0003735 ... A0QSL9 38355796
    891661 8v9l:Q (3.0) BS01 rna ? GO:0003735 ... A0QSG5 38355796
    891662 8v9l:Q (3.0) BS02 rna ? GO:0003735 ... A0QSG5 38355796
    891663 8v9l:R (3.0) BS01 rna ? GO:0003735 ... A0QV42 38355796
    891664 8v9l:R (3.0) BS02 rna ? GO:0003735 ... A0QV42 38355796
    891665 8v9l:S (3.0) BS01 rna ? GO:0000027 ... A0QYU6 38355796
    891666 8v9l:T (3.0) BS01 rna ? GO:0003723 ... A0R151 38355796
    891667 8v9l:U (3.0) BS01 rna ? GO:0003735 ... A0QSD6 38355796
    891668 8v9l:V (3.0) BS01 rna ? GO:0003735 ... A0QSD3 38355796
    891669 8v9l:W (3.0) BS01 rna ? GO:0003723 ... A0QSG0 38355796
    891670 8v9l:X (3.0) BS01 rna ? GO:0003723 ... A0R3D2 38355796
    891671 8v9l:X (3.0) BS02 rna ? GO:0003723 ... A0R3D2 38355796
    891672 8v9l:Y (3.0) BS01 rna ? GO:0003735 ... A0R150 38355796
    891673 8v9l:Z (3.0) BS01 rna ? GO:0003735 ... A0QV03 38355796
    891674 8v9l:b (3.0) BS01 rna ? GO:0003735 ... A0QVB8 38355796
    891675 8v9l:c (3.0) BS01 rna ? GO:0003676 ... A0QSD7 38355796
    891676 8v9l:d (3.0) BS01 rna ? GO:0003723 ... A0QSL7 38355796
    891677 8v9l:e (3.0) BS01 rna ? GO:0003723 ... A0QSG6 38355796
    891678 8v9l:f (3.0) BS01 rna ? GO:0003735 ... A0R7F9 38355796
    891679 8v9l:g (3.0) BS01 rna ? GO:0000049 ... A0QS97 38355796
    891680 8v9l:h (3.0) BS01 rna ? GO:0003735 ... A0QSG3 38355796
    891681 8v9l:i (3.0) BS01 rna ? GO:0003723 ... A0QSP9 38355796
    891682 8v9l:j (3.0) BS01 rna ? GO:0000049 ... A0QSD0 38355796
    891683 8v9l:k (3.0) BS01 rna ? GO:0003735 ... A0QSL6 38355796
    891684 8v9l:l (3.0) BS01 rna ? GO:0000049 ... A0QS96 38355796
    891685 8v9l:m (3.0) BS01 rna ? GO:0000049 ... A0QSL5 38355796
    891686 8v9l:n (3.0) BS01 rna ? GO:0003735 ... A0QSG2 38355796
    891687 8v9l:o (3.0) BS01 rna ? GO:0003735 ... A0QVQ3 38355796
    891688 8v9l:o (3.0) BS02 rna ? GO:0003735 ... A0QVQ3 38355796
    891689 8v9l:p (3.0) BS01 rna ? GO:0003735 ... A0QV37 38355796
    891690 8v9l:q (3.0) BS01 rna ? GO:0003735 ... A0QSE0 38355796
    891691 8v9l:r (3.0) BS01 rna ? GO:0003735 ... A0R7F7 38355796
    891692 8v9l:s (3.0) BS01 rna ? GO:0000028 ... A0QSD5 38355796
    891693 8v9l:t (3.0) BS01 rna ? GO:0003723 ... A0R102 38355796
    891694 8v9l:u (3.0) BS01 rna N/A N/A A0QR10 38355796
    891695 8v9l:u (3.0) BS02 rna N/A N/A A0QR10 38355796
    891696 8v9l:x (3.0) BS01 rna ? GO:0003746 ... A0QS98 38355796
    891697 8v9l:x (3.0) BS02 GDP ? GO:0003746 ... A0QS98 38355796
    891698 8v9l:z (3.0) BS01 rna ? N/A A0QRI6 38355796
    891699 8v9l:z (3.0) BS02 rna ? N/A A0QRI6 38355796
    891700 8v9m:A (1.61) BS01 YR5 2.6.1.13 GO:0004587 ... P04181 38630468
    891701 8v9m:B (1.61) BS01 YR5 2.6.1.13 GO:0004587 ... P04181 38630468
    891702 8v9m:C (1.61) BS01 YR5 2.6.1.13 GO:0004587 ... P04181 38630468
    891703 8v9n:F (1.78) BS01 dna N/A N/A P17947 39297050
    891704 8v9n:F (1.78) BS02 dna N/A N/A P17947 39297050
    891705 8v9p:A (1.85) BS01 YQK 4.1.99.1 GO:0006520 ... P28796 39114092
    891706 8v9p:B (1.85) BS01 YQK 4.1.99.1 GO:0006520 ... P28796 39114092
    891707 8v9p:C (1.85) BS01 YQK 4.1.99.1 GO:0006520 ... P28796 39114092
    891708 8v9p:D (1.85) BS01 YQK 4.1.99.1 GO:0006520 ... P28796 39114092
    891709 8v9q:A (2.29) BS01 peptide 2.4.1.41 GO:0004653 ... O08912 38416819
    891710 8v9q:A (2.29) BS02 peptide 2.4.1.41 GO:0004653 ... O08912 38416819
    891711 8v9q:A (2.29) BS03 UDP 2.4.1.41 GO:0004653 ... O08912 38416819
    891712 8v9q:A (2.29) BS04 MN 2.4.1.41 GO:0004653 ... O08912 38416819
    891713 8v9q:B (2.29) BS01 peptide 2.4.1.41 GO:0004653 ... O08912 38416819
    891714 8v9q:B (2.29) BS02 UDP 2.4.1.41 GO:0004653 ... O08912 38416819
    891715 8v9q:B (2.29) BS03 MN 2.4.1.41 GO:0004653 ... O08912 38416819
    891716 8v9r:A (2.8) BS01 ATP N/A N/A P0A6H1 N/A
    891717 8v9r:B (2.8) BS01 ATP N/A N/A P0A6H1 N/A
    891718 8v9r:C (2.8) BS01 ATP N/A N/A P0A6H1 N/A
    891719 8v9r:C (2.8) BS02 MG N/A N/A P0A6H1 N/A
    891720 8v9r:D (2.8) BS01 ATP N/A N/A P0A6H1 N/A
    891721 8v9r:D (2.8) BS02 ADP N/A N/A P0A6H1 N/A
    891722 8v9r:E (2.8) BS01 ADP N/A N/A P0A6H1 N/A
    891723 8v9r:F (2.8) BS01 ADP N/A N/A P0A6H1 N/A
    891724 8v9r:S (2.8) BS01 MTX N/A GO:0004146 ... P0ABQ4 N/A
    891725 8v9w:A (1.68) BS01 7V7 N/A N/A N/A 38945452
    891726 8v9w:B (1.68) BS01 7V7 N/A N/A N/A 38945452
    891727 8v9w:C (1.68) BS01 7V7 N/A N/A N/A 38945452
    891728 8v9w:D (1.68) BS01 7V7 N/A N/A N/A 38945452
    891729 8v9x:A (1.55) BS01 7V7 N/A N/A N/A 38945452
    891730 8v9z:A (1.6) BS01 7V7 N/A N/A N/A 38945452
    891731 8va0:A (1.85) BS01 7V7 N/A N/A N/A 38945452
    891732 8va0:B (1.85) BS01 7V7 N/A N/A N/A 38945452
    891733 8va1:A (3.4) BS01 V2V 2.7.8.14 GO:0005886 ... Q2G1B8 38416829
    891734 8va1:B (3.4) BS01 V2V 2.7.8.14 GO:0005886 ... Q2G1B8 38416829
    891735 8va1:C (3.4) BS01 V2V 2.7.8.14 GO:0005886 ... Q2G1B8 38416829
    891736 8va1:D (3.4) BS01 V2V 2.7.8.14 GO:0005886 ... Q2G1B8 38416829
    891737 8va2:a (4.5) BS01 GTP 3.6.5.- GO:0000226 ... P68363 38609661
    891738 8va2:a (4.5) BS02 MG 3.6.5.- GO:0000226 ... P68363 38609661
    891739 8va2:b (4.5) BS01 GTP 3.6.5.- GO:0000226 ... P68363 38609661
    891740 8va2:g (4.5) BS01 GDP ? GO:0000070 ... P23258 38609661
    891741 8va2:h (4.5) BS01 GDP ? GO:0000070 ... P23258 38609661
    891742 8va3:A (1.8) BS01 MG N/A N/A N/A 39397008
    891743 8va3:B (1.8) BS01 MG N/A N/A N/A 39397008
    891744 8va4:A (1.96) BS01 CA N/A N/A N/A 39397008
    891745 8va5:A (1.3) BS01 K5O N/A N/A O00255 N/A
    891746 8va6:A (1.57) BS01 K5O N/A N/A O00255 N/A
    891747 8va9:A (2.35) BS01 FE2 N/A GO:0005576 ... O84616 39471288
    891748 8va9:A (2.35) BS02 MN N/A GO:0005576 ... O84616 39471288
    891749 8va9:B (2.35) BS01 FE2 N/A GO:0005576 ... O84616 39471288
    891750 8va9:B (2.35) BS02 MN N/A GO:0005576 ... O84616 39471288
    891751 8vaa:A (3.58) BS01 ADP N/A GO:0001725 ... P68138 N/A
    891752 8vaa:B (3.58) BS01 ADP N/A GO:0001725 ... P68138 N/A
    891753 8vaa:C (3.58) BS01 ADP N/A GO:0001725 ... P68138 N/A
    891754 8vaa:D (3.58) BS01 ADP N/A GO:0001725 ... P68138 N/A
    891755 8vaa:E (3.58) BS01 ADP N/A GO:0001725 ... P68138 N/A
    891756 8vaa:F (3.58) BS01 ADP N/A GO:0001725 ... P68138 N/A
    891757 8vaa:G (3.58) BS01 ADP N/A GO:0001725 ... P68138 N/A
    891758 8vaa:H (3.58) BS01 ADP N/A GO:0001725 ... P68138 N/A
    891759 8vaa:I (3.58) BS01 ADP N/A GO:0001725 ... P68138 N/A
    891760 8vaa:J (3.58) BS01 ADP N/A GO:0001725 ... P68138 N/A
    891761 8vab:A (2.65) BS01 FE2 N/A GO:0005576 ... O84616 39471288
    891762 8vab:A (2.65) BS02 FE2 N/A GO:0005576 ... O84616 39471288
    891763 8vac:A (3.4) BS01 9TP N/A GO:0003677 ... P02768 38852682
    891764 8vae:A (3.7) BS01 SAL N/A GO:0003677 ... P02768 38852682
    891765 8vae:A (3.7) BS02 SAL N/A GO:0003677 ... P02768 38852682
    891766 8vae:A (3.7) BS03 SAL N/A GO:0003677 ... P02768 38852682
    891767 8vag:A (2.61) BS01 MN N/A GO:0005576 ... O84616 39471288
    891768 8vag:A (2.61) BS02 MN N/A GO:0005576 ... O84616 39471288
    891769 8vag:B (2.61) BS01 MN N/A GO:0005576 ... O84616 39471288
    891770 8vag:B (2.61) BS02 MN N/A GO:0005576 ... O84616 39471288
    891771 8vah:A (3.15) BS01 rna N/A GO:0000175 ... P05055 39495922
    891772 8vah:A (3.15) BS02 rna N/A GO:0000175 ... P05055 39495922
    891773 8vah:A (3.15) BS03 MG N/A GO:0000175 ... P05055 39495922
    891774 8vah:B (3.15) BS01 rna N/A GO:0000175 ... P05055 39495922
    891775 8vah:B (3.15) BS02 rna N/A GO:0000175 ... P05055 39495922
    891776 8vah:C (3.15) BS01 rna N/A GO:0000175 ... P05055 39495922
    891777 8vah:C (3.15) BS02 rna N/A GO:0000175 ... P05055 39495922
    891778 8vah:C (3.15) BS03 MG N/A GO:0000175 ... P05055 39495922
    891779 8vaj:A (3.45) BS01 rna N/A GO:0000794 ... Q9H9G7 39368090
    891780 8vaj:A (3.45) BS02 rna N/A GO:0000794 ... Q9H9G7 39368090
    891781 8vak:A (3.3) BS01 rna N/A GO:0000175 ... P05055 39495922
    891782 8vak:A (3.3) BS02 rna N/A GO:0000175 ... P05055 39495922
    891783 8vak:B (3.3) BS01 rna N/A GO:0000175 ... P05055 39495922
    891784 8vak:B (3.3) BS02 rna N/A GO:0000175 ... P05055 39495922
    891785 8vak:C (3.3) BS01 rna N/A GO:0000175 ... P05055 39495922
    891786 8vak:C (3.3) BS02 rna N/A GO:0000175 ... P05055 39495922
    891787 8val:A (3.7) BS01 dna 2.7.7.7 GO:0003677 ... P28630 38490435
    891788 8val:B (3.7) BS01 dna 2.7.7.7 GO:0003677 ... P06710 38490435
    891789 8val:B (3.7) BS02 ADP 2.7.7.7 GO:0003677 ... P06710 38490435
    891790 8val:C (3.7) BS01 dna 2.7.7.7 GO:0003677 ... P06710 38490435
    891791 8val:C (3.7) BS02 ZN 2.7.7.7 GO:0003677 ... P06710 38490435
    891792 8val:C (3.7) BS03 ADP 2.7.7.7 GO:0003677 ... P06710 38490435
    891793 8val:C (3.7) BS04 BEF 2.7.7.7 GO:0003677 ... P06710 38490435
    891794 8val:C (3.7) BS05 MG 2.7.7.7 GO:0003677 ... P06710 38490435
    891795 8val:D (3.7) BS01 dna 2.7.7.7 GO:0003677 ... P06710 38490435
    891796 8val:D (3.7) BS02 BEF 2.7.7.7 GO:0003677 ... P06710 38490435
    891797 8val:D (3.7) BS03 ZN 2.7.7.7 GO:0003677 ... P06710 38490435
    891798 8val:D (3.7) BS04 ADP 2.7.7.7 GO:0003677 ... P06710 38490435
    891799 8val:E (3.7) BS01 dna 2.7.7.7 GO:0003677 ... P28631 38490435
    891800 8val:E (3.7) BS02 ZN 2.7.7.7 GO:0003677 ... P28631 38490435

    Reference:
  • Chengxin Zhang, Xi Zhang, Lydia Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).