SEQ2FUN

BioLiP
Download all results in tab-seperated text for 1072681 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
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  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
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    # PDB
    (Resolution Å)
    Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    892601 8uh4:N (3.72) BS01 dna ? GO:0003677 ... P06448 N/A
    892602 8uh4:N (3.72) BS02 dna ? GO:0003677 ... P06448 N/A
    892603 8uh4:O (3.72) BS01 dna ? GO:0003677 ... P06448 N/A
    892604 8uh4:O (3.72) BS02 dna ? GO:0003677 ... P06448 N/A
    892605 8uh4:P (3.72) BS01 dna ? GO:0003677 ... P06448 N/A
    892606 8uh4:P (3.72) BS02 dna ? GO:0003677 ... P06448 N/A
    892607 8uh4:Q (3.72) BS01 dna ? GO:0003677 ... P06448 N/A
    892608 8uh4:Q (3.72) BS02 dna ? GO:0003677 ... P06448 N/A
    892609 8uh4:R (3.72) BS01 dna ? GO:0003677 ... P06448 N/A
    892610 8uh4:R (3.72) BS02 dna ? GO:0003677 ... P06448 N/A
    892611 8uh4:S (3.72) BS01 dna ? GO:0003677 ... P06448 N/A
    892612 8uh4:S (3.72) BS02 dna ? GO:0003677 ... P06448 N/A
    892613 8uh4:T (3.72) BS01 dna ? GO:0003677 ... P06448 N/A
    892614 8uh4:T (3.72) BS02 dna ? GO:0003677 ... P06448 N/A
    892615 8uh4:U (3.72) BS01 dna ? GO:0003677 ... P06448 N/A
    892616 8uh4:U (3.72) BS02 dna ? GO:0003677 ... P06448 N/A
    892617 8uh4:V (3.72) BS01 dna ? GO:0003677 ... P06448 N/A
    892618 8uh4:V (3.72) BS02 dna ? GO:0003677 ... P06448 N/A
    892619 8uh4:W (3.72) BS01 dna ? GO:0003677 ... P06448 N/A
    892620 8uh4:W (3.72) BS02 dna ? GO:0003677 ... P06448 N/A
    892621 8uh4:X (3.72) BS01 dna ? GO:0003677 ... P06448 N/A
    892622 8uh4:X (3.72) BS02 dna ? GO:0003677 ... P06448 N/A
    892623 8uh4:Y (3.72) BS01 dna ? GO:0003677 ... P06448 N/A
    892624 8uh4:Y (3.72) BS02 dna ? GO:0003677 ... P06448 N/A
    892625 8uh4:Z (3.72) BS01 dna ? GO:0003677 ... P06448 N/A
    892626 8uh4:Z (3.72) BS02 dna ? GO:0003677 ... P06448 N/A
    892627 8uh4:a (3.72) BS01 dna ? GO:0003677 ... P06448 N/A
    892628 8uh4:a (3.72) BS02 dna ? GO:0003677 ... P06448 N/A
    892629 8uh4:b (3.72) BS01 dna ? GO:0003677 ... P06448 N/A
    892630 8uh4:b (3.72) BS02 dna ? GO:0003677 ... P06448 N/A
    892631 8uh4:c (3.72) BS01 dna ? GO:0003677 ... P06448 N/A
    892632 8uh4:c (3.72) BS02 dna ? GO:0003677 ... P06448 N/A
    892633 8uh4:d (3.72) BS01 dna ? GO:0003677 ... P06448 N/A
    892634 8uh4:d (3.72) BS02 dna ? GO:0003677 ... P06448 N/A
    892635 8uh4:e (3.72) BS01 dna ? GO:0003677 ... P06448 N/A
    892636 8uh4:e (3.72) BS02 dna ? GO:0003677 ... P06448 N/A
    892637 8uh4:f (3.72) BS01 dna ? GO:0003677 ... P06448 N/A
    892638 8uh4:f (3.72) BS02 dna ? GO:0003677 ... P06448 N/A
    892639 8uh4:g (3.72) BS01 dna ? GO:0003677 ... P06448 N/A
    892640 8uh4:g (3.72) BS02 dna ? GO:0003677 ... P06448 N/A
    892641 8uh4:h (3.72) BS01 dna ? GO:0003677 ... P06448 N/A
    892642 8uh4:h (3.72) BS02 dna ? GO:0003677 ... P06448 N/A
    892643 8uh4:i (3.72) BS01 dna ? GO:0003677 ... P06448 N/A
    892644 8uh4:i (3.72) BS02 dna ? GO:0003677 ... P06448 N/A
    892645 8uh4:j (3.72) BS01 dna ? GO:0003677 ... P06448 N/A
    892646 8uh4:j (3.72) BS02 dna ? GO:0003677 ... P06448 N/A
    892647 8uh4:k (3.72) BS01 dna ? GO:0003677 ... P06448 N/A
    892648 8uh4:k (3.72) BS02 dna ? GO:0003677 ... P06448 N/A
    892649 8uh4:l (3.72) BS01 dna ? GO:0003677 ... P06448 N/A
    892650 8uh4:l (3.72) BS02 dna ? GO:0003677 ... P06448 N/A
    892651 8uh4:m (3.72) BS01 dna ? GO:0003677 ... P06448 N/A
    892652 8uh4:m (3.72) BS02 dna ? GO:0003677 ... P06448 N/A
    892653 8uh4:n (3.72) BS01 dna ? GO:0003677 ... P06448 N/A
    892654 8uh4:n (3.72) BS02 dna ? GO:0003677 ... P06448 N/A
    892655 8uh4:o (3.72) BS01 dna ? GO:0003677 ... P06448 N/A
    892656 8uh4:o (3.72) BS02 dna ? GO:0003677 ... P06448 N/A
    892657 8uh4:p (3.72) BS01 dna ? GO:0003677 ... P06448 N/A
    892658 8uh4:p (3.72) BS02 dna ? GO:0003677 ... P06448 N/A
    892659 8uh4:q (3.72) BS01 dna ? GO:0003677 ... P06448 N/A
    892660 8uh4:q (3.72) BS02 dna ? GO:0003677 ... P06448 N/A
    892661 8uh4:r (3.72) BS01 dna ? GO:0003677 ... P06448 N/A
    892662 8uh4:r (3.72) BS02 dna ? GO:0003677 ... P06448 N/A
    892663 8uh4:s (3.72) BS01 dna ? GO:0003677 ... P06448 N/A
    892664 8uh4:s (3.72) BS02 dna ? GO:0003677 ... P06448 N/A
    892665 8uh4:t (3.72) BS01 dna ? GO:0003677 ... P06448 N/A
    892666 8uh4:t (3.72) BS02 dna ? GO:0003677 ... P06448 N/A
    892667 8uh4:u (3.72) BS01 dna ? GO:0003677 ... P06448 N/A
    892668 8uh4:u (3.72) BS02 dna ? GO:0003677 ... P06448 N/A
    892669 8uh4:v (3.72) BS01 dna ? GO:0003677 ... P06448 N/A
    892670 8uh4:v (3.72) BS02 dna ? GO:0003677 ... P06448 N/A
    892671 8uh4:w (3.72) BS01 dna ? GO:0003677 ... P06448 N/A
    892672 8uh4:w (3.72) BS02 dna ? GO:0003677 ... P06448 N/A
    892673 8uh4:x (3.72) BS01 dna ? GO:0003677 ... P06448 N/A
    892674 8uh4:x (3.72) BS02 dna ? GO:0003677 ... P06448 N/A
    892675 8uh4:y (3.72) BS01 dna ? GO:0003677 ... P06448 N/A
    892676 8uh4:y (3.72) BS02 dna ? GO:0003677 ... P06448 N/A
    892677 8uh4:z (3.72) BS01 dna ? GO:0003677 ... P06448 N/A
    892678 8uh4:z (3.72) BS02 dna ? GO:0003677 ... P06448 N/A
    892679 8uh5:A (1.74) BS01 WOK 2.1.1.56
    2.1.1.57
    2.7.7.48
    2.7.7.50
    3.1.13.-
    3.4.19.12
    3.4.22.-
    3.4.22.69
    3.6.4.12
    3.6.4.13
    4.6.1.-
    GO:0008233 ... P0DTD1 39831159
    892680 8uh6:B (3.3) BS01 WO8 N/A GO:0005515 ... Q96SW2 39152201
    892681 8uh6:B (3.3) BS02 ZN N/A GO:0005515 ... Q96SW2 39152201
    892682 8uh6:C (3.3) BS01 WO8 N/A GO:0004725 ... P17706 39152201
    892683 8uh7:A (2.628) BS01 dna ? GO:0003677 ... P04527 38177685
    892684 8uh7:B (2.628) BS01 dna 3.6.4.- GO:0000166 ... P04526 38177685
    892685 8uh7:B (2.628) BS02 08T 3.6.4.- GO:0000166 ... P04526 38177685
    892686 8uh7:B (2.628) BS03 MG 3.6.4.- GO:0000166 ... P04526 38177685
    892687 8uh7:C (2.628) BS01 dna 3.6.4.- GO:0000166 ... P04526 38177685
    892688 8uh7:C (2.628) BS02 08T 3.6.4.- GO:0000166 ... P04526 38177685
    892689 8uh7:C (2.628) BS03 MG 3.6.4.- GO:0000166 ... P04526 38177685
    892690 8uh7:D (2.628) BS01 dna 3.6.4.- GO:0000166 ... P04526 38177685
    892691 8uh7:D (2.628) BS02 08T 3.6.4.- GO:0000166 ... P04526 38177685
    892692 8uh7:D (2.628) BS03 MG 3.6.4.- GO:0000166 ... P04526 38177685
    892693 8uh7:E (2.628) BS01 dna 3.6.4.- GO:0000166 ... P04526 38177685
    892694 8uh7:E (2.628) BS02 ADP 3.6.4.- GO:0000166 ... P04526 38177685
    892695 8uh9:A (2.067) BS01 WOK 2.1.1.56
    2.1.1.57
    2.7.7.48
    2.7.7.50
    3.1.13.-
    3.4.19.12
    3.4.22.-
    3.4.22.69
    3.6.4.12
    3.6.4.13
    4.6.1.-
    GO:0008233 ... P0DTD1 39831159
    892696 8uha:A (3.5) BS01 rna 2.7.7.6 GO:0001172 ... A0A8D1DPV6 38401543
    892697 8uha:A (3.5) BS02 dna 2.7.7.6 GO:0001172 ... A0A8D1DPV6 38401543
    892698 8uha:A (3.5) BS03 dna 2.7.7.6 GO:0001172 ... A0A8D1DPV6 38401543
    892699 8uha:A (3.5) BS04 MG 2.7.7.6 GO:0001172 ... A0A8D1DPV6 38401543
    892700 8uha:A (3.5) BS05 ZN 2.7.7.6 GO:0001172 ... A0A8D1DPV6 38401543
    892701 8uha:B (3.5) BS01 rna 2.7.7.6 GO:0000781 ... I3LGP4 38401543
    892702 8uha:B (3.5) BS02 dna 2.7.7.6 GO:0000781 ... I3LGP4 38401543
    892703 8uha:B (3.5) BS03 dna 2.7.7.6 GO:0000781 ... I3LGP4 38401543
    892704 8uha:B (3.5) BS04 ZN 2.7.7.6 GO:0000781 ... I3LGP4 38401543
    892705 8uha:C (3.5) BS01 ZN ? GO:0003677 ... I3LCH3 38401543
    892706 8uha:I (3.5) BS01 ZN ? GO:0001193 ... P60899 38401543
    892707 8uha:I (3.5) BS02 ZN ? GO:0001193 ... P60899 38401543
    892708 8uha:J (3.5) BS01 ZN ? GO:0003677 ... A0A8W4F9W9 38401543
    892709 8uha:L (3.5) BS01 ZN ? GO:0001650 ... A0A4X1TRS6 38401543
    892710 8uha:V (3.5) BS01 peptide ? GO:0005515 ... Q8WX92 38401543
    892711 8uhb:A (3.35) BS01 WV8 ? GO:0001594 ... P07550
    P0ABE7
    Q96RJ0
    38168118
    892712 8uhd:A (2.8) BS01 dna 2.7.7.6 GO:0001172 ... A0A8D1DPV6 38401543
    892713 8uhd:A (2.8) BS02 rna 2.7.7.6 GO:0001172 ... A0A8D1DPV6 38401543
    892714 8uhd:A (2.8) BS03 dna 2.7.7.6 GO:0001172 ... A0A8D1DPV6 38401543
    892715 8uhd:A (2.8) BS04 ZN 2.7.7.6 GO:0001172 ... A0A8D1DPV6 38401543
    892716 8uhd:A (2.8) BS05 ZN 2.7.7.6 GO:0001172 ... A0A8D1DPV6 38401543
    892717 8uhd:A (2.8) BS06 MG 2.7.7.6 GO:0001172 ... A0A8D1DPV6 38401543
    892718 8uhd:B (2.8) BS01 dna 2.7.7.6 GO:0000781 ... I3LGP4 38401543
    892719 8uhd:B (2.8) BS02 rna 2.7.7.6 GO:0000781 ... I3LGP4 38401543
    892720 8uhd:B (2.8) BS03 dna 2.7.7.6 GO:0000781 ... I3LGP4 38401543
    892721 8uhd:B (2.8) BS04 ZN 2.7.7.6 GO:0000781 ... I3LGP4 38401543
    892722 8uhd:C (2.8) BS01 ZN ? GO:0003677 ... I3LCH3 38401543
    892723 8uhd:E (2.8) BS01 dna ? GO:0003677 ... I3LSI7 38401543
    892724 8uhd:I (2.8) BS01 ZN ? GO:0001193 ... P60899 38401543
    892725 8uhd:I (2.8) BS02 ZN ? GO:0001193 ... P60899 38401543
    892726 8uhd:J (2.8) BS01 ZN ? GO:0003677 ... A0A8W4F9W9 38401543
    892727 8uhd:L (2.8) BS01 ZN ? GO:0001650 ... A0A4X1TRS6 38401543
    892728 8uhd:V (2.8) BS01 peptide ? GO:0005515 ... Q8WX92 38401543
    892729 8uhe:B (2.78) BS01 M1V ? GO:0015979 ... A0ACD6B9L1 38141759
    892730 8uhe:C (2.78) BS01 M1V ? GO:0015979 ... A0ACD6B9M9 38141759
    892731 8uhe:C (2.78) BS02 M1V ? GO:0015979 ... A0ACD6B9M9 38141759
    892732 8uhe:J (2.78) BS01 M1V ? GO:0015979 ... A0ACD6B9K7 38141759
    892733 8uhe:K (2.78) BS01 M1V ? GO:0015979 ... A0ACD6B9L9 38141759
    892734 8uhg:A (2.7) BS01 dna 2.7.7.6 GO:0001172 ... A0A8D1DPV6 38401543
    892735 8uhg:A (2.7) BS02 rna 2.7.7.6 GO:0001172 ... A0A8D1DPV6 38401543
    892736 8uhg:A (2.7) BS03 dna 2.7.7.6 GO:0001172 ... A0A8D1DPV6 38401543
    892737 8uhg:A (2.7) BS04 ZN 2.7.7.6 GO:0001172 ... A0A8D1DPV6 38401543
    892738 8uhg:A (2.7) BS05 ZN 2.7.7.6 GO:0001172 ... A0A8D1DPV6 38401543
    892739 8uhg:A (2.7) BS06 MG 2.7.7.6 GO:0001172 ... A0A8D1DPV6 38401543
    892740 8uhg:B (2.7) BS01 rna 2.7.7.6 GO:0000781 ... I3LGP4 38401543
    892741 8uhg:B (2.7) BS02 dna 2.7.7.6 GO:0000781 ... I3LGP4 38401543
    892742 8uhg:B (2.7) BS03 ZN 2.7.7.6 GO:0000781 ... I3LGP4 38401543
    892743 8uhg:C (2.7) BS01 ZN ? GO:0003677 ... I3LCH3 38401543
    892744 8uhg:I (2.7) BS01 ZN ? GO:0001193 ... P60899 38401543
    892745 8uhg:I (2.7) BS02 ZN ? GO:0001193 ... P60899 38401543
    892746 8uhg:J (2.7) BS01 ZN ? GO:0003677 ... A0A8W4F9W9 38401543
    892747 8uhg:L (2.7) BS01 ZN ? GO:0001650 ... A0A4X1TRS6 38401543
    892748 8uhi:A (2.35) BS01 RUB 4.1.1.39 GO:0000287 ... A0ACD6B9M5 38141759
    892749 8uhi:A (2.35) BS02 MG 4.1.1.39 GO:0000287 ... A0ACD6B9M5 38141759
    892750 8uhi:B (2.35) BS01 RUB 4.1.1.39 GO:0000287 ... A0ACD6B9M5 38141759
    892751 8uhi:B (2.35) BS02 MG 4.1.1.39 GO:0000287 ... A0ACD6B9M5 38141759
    892752 8uhi:C (2.35) BS01 RUB 4.1.1.39 GO:0000287 ... A0ACD6B9M5 38141759
    892753 8uhi:C (2.35) BS02 MG 4.1.1.39 GO:0000287 ... A0ACD6B9M5 38141759
    892754 8uhi:D (2.35) BS01 RUB 4.1.1.39 GO:0000287 ... A0ACD6B9M5 38141759
    892755 8uhi:D (2.35) BS02 MG 4.1.1.39 GO:0000287 ... A0ACD6B9M5 38141759
    892756 8uhi:E (2.35) BS01 RUB 4.1.1.39 GO:0000287 ... A0ACD6B9M5 38141759
    892757 8uhi:E (2.35) BS02 MG 4.1.1.39 GO:0000287 ... A0ACD6B9M5 38141759
    892758 8uhi:F (2.35) BS01 RUB 4.1.1.39 GO:0000287 ... A0ACD6B9M5 38141759
    892759 8uhi:F (2.35) BS02 MG 4.1.1.39 GO:0000287 ... A0ACD6B9M5 38141759
    892760 8uhi:G (2.35) BS01 RUB 4.1.1.39 GO:0000287 ... A0ACD6B9M5 38141759
    892761 8uhi:G (2.35) BS02 MG 4.1.1.39 GO:0000287 ... A0ACD6B9M5 38141759
    892762 8uhi:H (2.35) BS01 RUB 4.1.1.39 GO:0000287 ... A0ACD6B9M5 38141759
    892763 8uhi:H (2.35) BS02 MG 4.1.1.39 GO:0000287 ... A0ACD6B9M5 38141759
    892764 8uhk:E (3.08) BS01 dna N/A GO:0003700 ... P17947 N/A
    892765 8uhk:E (3.08) BS02 dna N/A GO:0003700 ... P17947 N/A
    892766 8uhk:F (3.08) BS01 dna N/A GO:0003700 ... P17947 N/A
    892767 8uhk:F (3.08) BS02 dna N/A GO:0003700 ... P17947 N/A
    892768 8uhk:F (3.08) BS03 dna N/A GO:0003700 ... P17947 N/A
    892769 8uhl:A (1.92) BS01 peptide ? N/A Q9ULI0 38733345
    892770 8uhl:A (1.92) BS02 peptide ? N/A Q9ULI0 38733345
    892771 8uhn:A (2.09) BS01 peptide N/A N/A N/A 39574610
    892772 8uhn:B (2.09) BS01 peptide N/A N/A N/A 39574610
    892773 8uhn:H (2.09) BS01 peptide N/A N/A N/A 39574610
    892774 8uhn:L (2.09) BS01 peptide N/A N/A N/A 39574610
    892775 8uho:A (2.02) BS01 WTE 2.1.1.56
    2.1.1.57
    2.7.7.48
    2.7.7.50
    3.1.13.-
    3.4.19.12
    3.4.22.-
    3.4.22.69
    3.6.4.12
    3.6.4.13
    4.6.1.-
    GO:0008233 ... P0DTD1 38309201
    892776 8uho:B (2.02) BS01 WTE 2.1.1.56
    2.1.1.57
    2.7.7.48
    2.7.7.50
    3.1.13.-
    3.4.19.12
    3.4.22.-
    3.4.22.69
    3.6.4.12
    3.6.4.13
    4.6.1.-
    GO:0008233 ... P0DTD1 38309201
    892777 8uhp:A (1.98) BS01 peptide N/A N/A N/A 39574610
    892778 8uhp:B (1.98) BS01 peptide N/A N/A N/A 39574610
    892779 8uhp:H (1.98) BS01 peptide N/A N/A N/A 39574610
    892780 8uhp:L (1.98) BS01 peptide N/A N/A N/A 39574610
    892781 8uhw:B (3.28) BS01 FE N/A GO:0004022 ... A3DCI2 40577193
    892782 8uhw:C (3.28) BS01 FE N/A GO:0004022 ... A3DCI2 40577193
    892783 8uhw:D (3.28) BS01 FE N/A GO:0004022 ... A3DCI2 40577193
    892784 8uhw:E (3.28) BS01 FE N/A GO:0004022 ... A3DCI2 40577193
    892785 8uhw:F (3.28) BS01 FE N/A GO:0004022 ... A3DCI2 40577193
    892786 8uhz:A (2.55) BS01 MN 2.4.1.41 N/A A0A125YMZ8 38710711
    892787 8uhz:A (2.55) BS02 MN 2.4.1.41 N/A A0A125YMZ8 38710711
    892788 8ui0:A (2.7) BS01 dna 2.7.7.6 GO:0001172 ... A0A8D1DPV6 38401543
    892789 8ui0:A (2.7) BS02 rna 2.7.7.6 GO:0001172 ... A0A8D1DPV6 38401543
    892790 8ui0:A (2.7) BS03 dna 2.7.7.6 GO:0001172 ... A0A8D1DPV6 38401543
    892791 8ui0:A (2.7) BS04 ZN 2.7.7.6 GO:0001172 ... A0A8D1DPV6 38401543
    892792 8ui0:A (2.7) BS05 ZN 2.7.7.6 GO:0001172 ... A0A8D1DPV6 38401543
    892793 8ui0:A (2.7) BS06 MG 2.7.7.6 GO:0001172 ... A0A8D1DPV6 38401543
    892794 8ui0:B (2.7) BS01 rna 2.7.7.6 GO:0000781 ... I3LGP4 38401543
    892795 8ui0:B (2.7) BS02 dna 2.7.7.6 GO:0000781 ... I3LGP4 38401543
    892796 8ui0:B (2.7) BS03 ZN 2.7.7.6 GO:0000781 ... I3LGP4 38401543
    892797 8ui0:C (2.7) BS01 ZN ? GO:0003677 ... I3LCH3 38401543
    892798 8ui0:I (2.7) BS01 ZN ? GO:0001193 ... P60899 38401543
    892799 8ui0:I (2.7) BS02 ZN ? GO:0001193 ... P60899 38401543
    892800 8ui0:J (2.7) BS01 ZN ? GO:0003677 ... A0A8W4F9W9 38401543

    Reference:
  • Chengxin Zhang, Xi Zhang, Lydia Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).