SEQ2FUN

BioLiP
Download all results in tab-seperated text for 942758 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.
  • Sort results by
    << < 4454 4455 4456 4457 4458 4459 4460 4461 4462 4463 4464 4465 4466 4467 4468 4469 4470 4471 4472 4473 4474 > >>
    Go to page

    # PDB
    (Resolution Å)
    Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    892601 8vga:A (2.57602) BS01 MG N/A GO:0001664 ... D8QR00 38569936
    892602 8vga:A (2.57602) BS02 GSP N/A GO:0001664 ... D8QR00 38569936
    892603 8vga:B (2.57602) BS01 MG N/A GO:0001664 ... D8QR00 38569936
    892604 8vga:B (2.57602) BS02 GSP N/A GO:0001664 ... D8QR00 38569936
    892605 8vgb:A (2.99) BS01 GDP N/A GO:0001664 ... A2Y3B5 38569936
    892606 8vgb:B (2.99) BS01 GDP N/A GO:0001664 ... A2Y3B5 38569936
    892607 8vgb:C (2.99) BS01 GDP N/A GO:0001664 ... A2Y3B5 38569936
    892608 8vgb:D (2.99) BS01 GDP N/A GO:0001664 ... A2Y3B5 38569936
    892609 8vgb:D (2.99) BS02 MG N/A GO:0001664 ... A2Y3B5 38569936
    892610 8vgc:A (1.42) BS01 peptide ? GO:0022857 ... P0ABV2 38311172
    892611 8vgc:B (1.42) BS01 peptide ? GO:0022857 ... P0ABV2 38311172
    892612 8vgd:A (1.42) BS01 peptide ? GO:0022857 ... P0ABV2 38311172
    892613 8vgd:B (1.42) BS01 peptide ? GO:0022857 ... P0ABV2 38311172
    892614 8vgp:A (2.7) BS01 CA N/A N/A O15123 38798381
    892615 8vgq:A (2.8) BS01 A1AAW N/A N/A P01116 38798381
    892616 8vgq:A (2.8) BS02 GDP N/A N/A P01116 38798381
    892617 8vgu:A (2.03) BS01 MH0 N/A N/A N/A N/A
    892618 8vgu:A (2.03) BS02 MPG N/A N/A N/A N/A
    892619 8vgu:A (2.03) BS03 OXY N/A N/A N/A N/A
    892620 8vgu:B (2.03) BS01 MH0 N/A N/A N/A N/A
    892621 8vgu:B (2.03) BS02 MPG N/A N/A N/A N/A
    892622 8vgu:B (2.03) BS03 MPG N/A N/A N/A N/A
    892623 8vgu:B (2.03) BS04 OXY N/A N/A N/A N/A
    892624 8vgv:D (3.6) BS01 MAN N/A N/A N/A 39489734
    892625 8vgv:D (3.6) BS02 MAN N/A N/A N/A 39489734
    892626 8vgv:H (3.6) BS01 MAN N/A N/A N/A 39489734
    892627 8vgv:L (3.6) BS01 MAN N/A N/A N/A 39489734
    892628 8vgy:A (2.3) BS01 FAD N/A N/A O95831
    Q8N4Q1
    N/A
    892629 8vgy:C (2.3) BS01 FAD N/A N/A O95831
    Q8N4Q1
    N/A
    892630 8vgz:A (2.09) BS01 MN 3.1.-.- GO:0003723 ... C3W5S0 38190441
    892631 8vgz:A (2.09) BS02 MN 3.1.-.- GO:0003723 ... C3W5S0 38190441
    892632 8vh0:A (2.3) BS01 CA N/A N/A O81959 N/A
    892633 8vh0:B (2.3) BS01 CA N/A N/A O81959 N/A
    892634 8vh4:A (4.1) BS01 GDP N/A GO:0000139 ... Q5S007 39343966
    892635 8vh4:A (4.1) BS02 ANP N/A GO:0000139 ... Q5S007 39343966
    892636 8vh4:B (4.1) BS01 GNP N/A N/A Q6IQ22 39343966
    892637 8vh5:A (4.0) BS01 GDP N/A GO:0000139 ... Q5S007 39343966
    892638 8vh5:A (4.0) BS02 ANP N/A GO:0000139 ... Q5S007 39343966
    892639 8vh5:B (4.0) BS01 GNP N/A N/A Q6IQ22 39343966
    892640 8vh5:C (4.0) BS01 GDP N/A GO:0000139 ... Q5S007 39343966
    892641 8vh5:C (4.0) BS02 ANP N/A GO:0000139 ... Q5S007 39343966
    892642 8vh5:D (4.0) BS01 GNP N/A N/A Q6IQ22 39343966
    892643 8vh7:A (1.982) BS01 UDP N/A N/A Q5SGE1 N/A
    892644 8vh7:A (1.982) BS02 MN N/A N/A Q5SGE1 N/A
    892645 8vh7:A (1.982) BS03 UDP N/A N/A Q5SGE1 N/A
    892646 8vh7:B (1.982) BS01 UDP N/A N/A Q5SGE1 N/A
    892647 8vh7:B (1.982) BS02 MN N/A N/A Q5SGE1 N/A
    892648 8vh7:B (1.982) BS03 UDP N/A N/A Q5SGE1 N/A
    892649 8vh8:A (2.85) BS01 UDP N/A N/A Q5SGE1 N/A
    892650 8vh8:A (2.85) BS02 MN N/A N/A Q5SGE1 N/A
    892651 8vh8:A (2.85) BS03 UDP N/A N/A Q5SGE1 N/A
    892652 8vh8:B (2.85) BS01 UDP N/A N/A Q5SGE1 N/A
    892653 8vh8:B (2.85) BS02 MN N/A N/A Q5SGE1 N/A
    892654 8vh8:B (2.85) BS03 UDP N/A N/A Q5SGE1 N/A
    892655 8vh8:C (2.85) BS01 UDP N/A N/A Q5SGE1 N/A
    892656 8vh8:C (2.85) BS02 MN N/A N/A Q5SGE1 N/A
    892657 8vh8:C (2.85) BS03 UDP N/A N/A Q5SGE1 N/A
    892658 8vh8:D (2.85) BS01 UDP N/A N/A Q5SGE1 N/A
    892659 8vh8:D (2.85) BS02 MN N/A N/A Q5SGE1 N/A
    892660 8vh8:D (2.85) BS03 UDP N/A N/A Q5SGE1 N/A
    892661 8vh9:A (2.13) BS01 NDP 1.1.1.42 GO:0000287 ... O75874 38710674
    892662 8vh9:B (2.13) BS01 NDP 1.1.1.42 GO:0000287 ... O75874 38710674
    892663 8vha:A (2.28) BS01 EE1 1.1.1.42 GO:0000287 ... O75874 38710674
    892664 8vha:A (2.28) BS02 CA 1.1.1.42 GO:0000287 ... O75874 38710674
    892665 8vha:B (2.28) BS01 NDP 1.1.1.42 GO:0000287 ... O75874 38710674
    892666 8vha:B (2.28) BS02 AKG 1.1.1.42 GO:0000287 ... O75874 38710674
    892667 8vha:C (2.28) BS01 EE1 1.1.1.42 GO:0000287 ... O75874 38710674
    892668 8vha:D (2.28) BS01 EE1 1.1.1.42 GO:0000287 ... O75874 38710674
    892669 8vha:D (2.28) BS02 NDP 1.1.1.42 GO:0000287 ... O75874 38710674
    892670 8vhb:A (1.89) BS01 AKG 1.1.1.42 GO:0000287 ... O75874 38710674
    892671 8vhb:A (1.89) BS02 NDP 1.1.1.42 GO:0000287 ... O75874 38710674
    892672 8vhb:B (1.89) BS01 EE1 1.1.1.42 GO:0000287 ... O75874 38710674
    892673 8vhb:C (1.89) BS01 AKG 1.1.1.42 GO:0000287 ... O75874 38710674
    892674 8vhb:C (1.89) BS02 NDP 1.1.1.42 GO:0000287 ... O75874 38710674
    892675 8vhb:D (1.89) BS01 EE1 1.1.1.42 GO:0000287 ... O75874 38710674
    892676 8vhc:A (2.44) BS01 NDP 1.1.1.42 GO:0000287 ... O75874 38710674
    892677 8vhc:B (2.44) BS01 NDP 1.1.1.42 GO:0000287 ... O75874 38710674
    892678 8vhd:A (2.38) BS01 NAP 1.1.1.42 GO:0000287 ... O75874 38710674
    892679 8vhd:A (2.38) BS02 CA 1.1.1.42 GO:0000287 ... O75874 38710674
    892680 8vhd:B (2.38) BS01 NAP 1.1.1.42 GO:0000287 ... O75874 38710674
    892681 8vhd:C (2.38) BS01 NAP 1.1.1.42 GO:0000287 ... O75874 38710674
    892682 8vhd:D (2.38) BS01 NAP 1.1.1.42 GO:0000287 ... O75874 38710674
    892683 8vhd:D (2.38) BS02 NAP 1.1.1.42 GO:0000287 ... O75874 38710674
    892684 8vhd:D (2.38) BS03 CA 1.1.1.42 GO:0000287 ... O75874 38710674
    892685 8vhe:A (2.16) BS01 A1AAX 1.1.1.42 GO:0000287 ... O75874 38710674
    892686 8vhe:A (2.16) BS02 CA 1.1.1.42 GO:0000287 ... O75874 38710674
    892687 8vhe:B (2.16) BS01 A1AAX 1.1.1.42 GO:0000287 ... O75874 38710674
    892688 8vhe:B (2.16) BS02 CA 1.1.1.42 GO:0000287 ... O75874 38710674
    892689 8vhe:C (2.16) BS01 A1AAX 1.1.1.42 GO:0000287 ... O75874 38710674
    892690 8vhe:C (2.16) BS02 CA 1.1.1.42 GO:0000287 ... O75874 38710674
    892691 8vhe:D (2.16) BS01 A1AAX 1.1.1.42 GO:0000287 ... O75874 38710674
    892692 8vhe:D (2.16) BS02 CA 1.1.1.42 GO:0000287 ... O75874 38710674
    892693 8vhf:R (3.51) BS01 8VP N/A GO:0004930 ... P0ABE7
    Q8TDV5
    N/A
    892694 8vhg:A (3.6) BS01 dna N/A N/A P97481 N/A
    892695 8vhh:A (2.15) BS01 PLP N/A GO:0000162 ... P50909 39074291
    892696 8vhh:B (2.15) BS01 PLP N/A GO:0000162 ... P50909 39074291
    892697 8vhl:A (1.93) BS01 FMN 1.3.5.2 GO:0004151 ... Q02127 38505861
    892698 8vhl:A (1.93) BS02 A1AA2 1.3.5.2 GO:0004151 ... Q02127 38505861
    892699 8vhm:A (2.26) BS01 FMN 1.3.5.2 GO:0004151 ... Q02127 38505861
    892700 8vhm:A (2.26) BS02 A1AA1 1.3.5.2 GO:0004151 ... Q02127 38505861
    892701 8vhn:A (2.62) BS01 ATP N/A GO:0004748 ... P00452 39164005
    892702 8vhn:A (2.62) BS02 ATP N/A GO:0004748 ... P00452 39164005
    892703 8vhn:A (2.62) BS03 ATP N/A GO:0004748 ... P00452 39164005
    892704 8vhn:A (2.62) BS04 ATP N/A GO:0004748 ... P00452 39164005
    892705 8vhn:B (2.62) BS01 ATP N/A GO:0004748 ... P00452 39164005
    892706 8vhn:B (2.62) BS02 ATP N/A GO:0004748 ... P00452 39164005
    892707 8vhn:B (2.62) BS03 ATP N/A GO:0004748 ... P00452 39164005
    892708 8vhn:B (2.62) BS04 ATP N/A GO:0004748 ... P00452 39164005
    892709 8vho:A (2.548) BS01 DTP N/A GO:0004748 ... P00452 39164005
    892710 8vho:A (2.548) BS02 DTP N/A GO:0004748 ... P00452 39164005
    892711 8vho:A (2.548) BS03 DTP N/A GO:0004748 ... P00452 39164005
    892712 8vho:B (2.548) BS01 DTP N/A GO:0004748 ... P00452 39164005
    892713 8vho:B (2.548) BS02 DTP N/A GO:0004748 ... P00452 39164005
    892714 8vho:B (2.548) BS03 DTP N/A GO:0004748 ... P00452 39164005
    892715 8vhp:A (2.608) BS01 ATP N/A GO:0004748 ... P00452 39164005
    892716 8vhp:A (2.608) BS02 ATP N/A GO:0004748 ... P00452 39164005
    892717 8vhp:A (2.608) BS03 ATP N/A GO:0004748 ... P00452 39164005
    892718 8vhp:A (2.608) BS04 CDP N/A GO:0004748 ... P00452 39164005
    892719 8vhp:A (2.608) BS05 ATP N/A GO:0004748 ... P00452 39164005
    892720 8vhp:B (2.608) BS01 ATP N/A GO:0004748 ... P00452 39164005
    892721 8vhp:B (2.608) BS02 ATP N/A GO:0004748 ... P00452 39164005
    892722 8vhp:B (2.608) BS03 ATP N/A GO:0004748 ... P00452 39164005
    892723 8vhp:B (2.608) BS04 ATP N/A GO:0004748 ... P00452 39164005
    892724 8vhp:B (2.608) BS05 CDP N/A GO:0004748 ... P00452 39164005
    892725 8vhp:C (2.608) BS01 ATP N/A GO:0004748 ... P00452 39164005
    892726 8vhp:C (2.608) BS02 ATP N/A GO:0004748 ... P00452 39164005
    892727 8vhp:C (2.608) BS03 ATP N/A GO:0004748 ... P00452 39164005
    892728 8vhp:C (2.608) BS04 CDP N/A GO:0004748 ... P00452 39164005
    892729 8vhp:C (2.608) BS05 ATP N/A GO:0004748 ... P00452 39164005
    892730 8vhp:D (2.608) BS01 ATP N/A GO:0004748 ... P00452 39164005
    892731 8vhp:D (2.608) BS02 ATP N/A GO:0004748 ... P00452 39164005
    892732 8vhp:D (2.608) BS03 ATP N/A GO:0004748 ... P00452 39164005
    892733 8vhp:D (2.608) BS04 ATP N/A GO:0004748 ... P00452 39164005
    892734 8vhp:D (2.608) BS05 CDP N/A GO:0004748 ... P00452 39164005
    892735 8vhp:E (2.608) BS01 ATP N/A GO:0004748 ... P00452 39164005
    892736 8vhp:E (2.608) BS02 ATP N/A GO:0004748 ... P00452 39164005
    892737 8vhp:E (2.608) BS03 ATP N/A GO:0004748 ... P00452 39164005
    892738 8vhp:E (2.608) BS04 CDP N/A GO:0004748 ... P00452 39164005
    892739 8vhp:E (2.608) BS05 ATP N/A GO:0004748 ... P00452 39164005
    892740 8vhp:F (2.608) BS01 ATP N/A GO:0004748 ... P00452 39164005
    892741 8vhp:F (2.608) BS02 ATP N/A GO:0004748 ... P00452 39164005
    892742 8vhp:F (2.608) BS03 ATP N/A GO:0004748 ... P00452 39164005
    892743 8vhp:F (2.608) BS04 ATP N/A GO:0004748 ... P00452 39164005
    892744 8vhp:F (2.608) BS05 CDP N/A GO:0004748 ... P00452 39164005
    892745 8vhp:G (2.608) BS01 ATP N/A GO:0004748 ... P00452 39164005
    892746 8vhp:G (2.608) BS02 ATP N/A GO:0004748 ... P00452 39164005
    892747 8vhp:G (2.608) BS03 ATP N/A GO:0004748 ... P00452 39164005
    892748 8vhp:G (2.608) BS04 CDP N/A GO:0004748 ... P00452 39164005
    892749 8vhp:G (2.608) BS05 ATP N/A GO:0004748 ... P00452 39164005
    892750 8vhp:H (2.608) BS01 ATP N/A GO:0004748 ... P00452 39164005
    892751 8vhp:H (2.608) BS02 ATP N/A GO:0004748 ... P00452 39164005
    892752 8vhp:H (2.608) BS03 ATP N/A GO:0004748 ... P00452 39164005
    892753 8vhp:H (2.608) BS04 ATP N/A GO:0004748 ... P00452 39164005
    892754 8vhp:H (2.608) BS05 CDP N/A GO:0004748 ... P00452 39164005
    892755 8vhq:A (3.4) BS01 DTP N/A GO:0004748 ... P00452 39164005
    892756 8vhq:A (3.4) BS02 ATP N/A GO:0004748 ... P00452 39164005
    892757 8vhq:A (3.4) BS03 DTP N/A GO:0004748 ... P00452 39164005
    892758 8vhq:A (3.4) BS04 DTP N/A GO:0004748 ... P00452 39164005
    892759 8vhq:B (3.4) BS01 DTP N/A GO:0004748 ... P00452 39164005
    892760 8vhq:B (3.4) BS02 DTP N/A GO:0004748 ... P00452 39164005
    892761 8vhq:B (3.4) BS03 ATP N/A GO:0004748 ... P00452 39164005
    892762 8vhq:B (3.4) BS04 DTP N/A GO:0004748 ... P00452 39164005
    892763 8vhq:C (3.4) BS01 DTP N/A GO:0004748 ... P00452 39164005
    892764 8vhq:C (3.4) BS02 ATP N/A GO:0004748 ... P00452 39164005
    892765 8vhq:C (3.4) BS03 DTP N/A GO:0004748 ... P00452 39164005
    892766 8vhq:C (3.4) BS04 DTP N/A GO:0004748 ... P00452 39164005
    892767 8vhq:D (3.4) BS01 DTP N/A GO:0004748 ... P00452 39164005
    892768 8vhq:D (3.4) BS02 DTP N/A GO:0004748 ... P00452 39164005
    892769 8vhq:D (3.4) BS03 ATP N/A GO:0004748 ... P00452 39164005
    892770 8vhq:D (3.4) BS04 DTP N/A GO:0004748 ... P00452 39164005
    892771 8vhr:A (3.55) BS01 DTP N/A GO:0004748 ... P00452 39164005
    892772 8vhr:A (3.55) BS02 GTP N/A GO:0004748 ... P00452 39164005
    892773 8vhr:A (3.55) BS03 DTP N/A GO:0004748 ... P00452 39164005
    892774 8vhr:A (3.55) BS04 DTP N/A GO:0004748 ... P00452 39164005
    892775 8vhr:B (3.55) BS01 DTP N/A GO:0004748 ... P00452 39164005
    892776 8vhr:B (3.55) BS02 DTP N/A GO:0004748 ... P00452 39164005
    892777 8vhr:B (3.55) BS03 GTP N/A GO:0004748 ... P00452 39164005
    892778 8vhr:B (3.55) BS04 DTP N/A GO:0004748 ... P00452 39164005
    892779 8vhr:C (3.55) BS01 DTP N/A GO:0004748 ... P00452 39164005
    892780 8vhr:C (3.55) BS02 GTP N/A GO:0004748 ... P00452 39164005
    892781 8vhr:C (3.55) BS03 DTP N/A GO:0004748 ... P00452 39164005
    892782 8vhr:D (3.55) BS01 DTP N/A GO:0004748 ... P00452 39164005
    892783 8vhr:D (3.55) BS02 DTP N/A GO:0004748 ... P00452 39164005
    892784 8vhr:D (3.55) BS03 GTP N/A GO:0004748 ... P00452 39164005
    892785 8vhr:D (3.55) BS04 DTP N/A GO:0004748 ... P00452 39164005
    892786 8vht:A (3.2) BS01 BGC N/A N/A I1LVD2 N/A
    892787 8vht:A (3.2) BS02 BGC N/A N/A I1LVD2 N/A
    892788 8vht:B (3.2) BS01 BGC N/A N/A I1LVD2 N/A
    892789 8vht:D (3.2) BS01 BGC N/A N/A I1LVD2 N/A
    892790 8vht:D (3.2) BS02 BGC N/A N/A I1LVD2 N/A
    892791 8vhu:A (2.1) BS01 DTP N/A GO:0004748 ... P00452
    P69924
    39164005
    892792 8vhu:A (2.1) BS02 DTP N/A GO:0004748 ... P00452
    P69924
    39164005
    892793 8vhu:A (2.1) BS03 DTP N/A GO:0004748 ... P00452
    P69924
    39164005
    892794 8vhu:B (2.1) BS01 DTP N/A GO:0004748 ... P00452
    P69924
    39164005
    892795 8vhu:B (2.1) BS02 DTP N/A GO:0004748 ... P00452
    P69924
    39164005
    892796 8vhw:A (2.3) BS01 MN N/A GO:0000302 ... P04179 39013847
    892797 8vhw:B (2.3) BS01 MN N/A GO:0000302 ... P04179 39013847
    892798 8vhy:A (2.3) BS01 MN N/A GO:0000302 ... P04179 39013847
    892799 8vhy:B (2.3) BS01 MN N/A GO:0000302 ... P04179 39013847
    892800 8vi0:A (3.0) BS01 BGC N/A N/A I1JDD7 N/A

    Reference:
  • Chengxin Zhang, Xi Zhang, Lydia Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).