SEQ2FUN

BioLiP
Download all results in tab-seperated text for 942758 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
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  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.
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    # PDB
    (Resolution Å)
    Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    892801 8vi0:B (3.0) BS01 BGC N/A N/A I1JDD7 N/A
    892802 8vi0:B (3.0) BS02 BGC N/A N/A I1JDD7 N/A
    892803 8vi0:D (3.0) BS01 BGC N/A N/A I1JDD7 N/A
    892804 8vi0:D (3.0) BS02 BGC N/A N/A I1JDD7 N/A
    892805 8vi8:A (3.21) BS01 X5Z N/A GO:0015276 ... C3THM2 39088332
    892806 8vi8:A (3.21) BS02 X5Z N/A GO:0015276 ... C3THM2 39088332
    892807 8vi8:B (3.21) BS01 X5Z N/A GO:0015276 ... C3THM2 39088332
    892808 8vi8:C (3.21) BS01 X5Z N/A GO:0015276 ... C3THM2 39088332
    892809 8vi8:D (3.21) BS01 X5Z N/A GO:0015276 ... C3THM2 39088332
    892810 8vi8:E (3.21) BS01 X5Z N/A GO:0015276 ... C3THM2 39088332
    892811 8vi8:F (3.21) BS01 X5Z N/A GO:0015276 ... C3THM2 39088332
    892812 8vic:A (3.48) BS01 A1AA3 N/A GO:0005267 ... Q9BSA9 N/A
    892813 8vie:A (3.52) BS01 A1AB0 N/A GO:0005267 ... Q9BSA9 N/A
    892814 8vig:A (1.6) BS01 FE N/A GO:0046872 ... A0A978T1Y9 39216472
    892815 8vig:A (1.6) BS02 AVJ N/A GO:0046872 ... A0A978T1Y9 39216472
    892816 8vih:A (1.55) BS01 FE N/A GO:0046872 ... B1WTS6 39216472
    892817 8vih:A (1.55) BS02 AVJ N/A GO:0046872 ... B1WTS6 39216472
    892818 8vih:B (1.55) BS01 FE N/A GO:0046872 ... B1WTS6 39216472
    892819 8vih:B (1.55) BS02 AVJ N/A GO:0046872 ... B1WTS6 39216472
    892820 8vii:A (1.621) BS01 MN N/A GO:0046872 ... B1WTS6 39216472
    892821 8vii:A (1.621) BS02 AVJ N/A GO:0046872 ... B1WTS6 39216472
    892822 8vii:A (1.621) BS03 CYS N/A GO:0046872 ... B1WTS6 39216472
    892823 8vii:B (1.621) BS01 MN N/A GO:0046872 ... B1WTS6 39216472
    892824 8vii:B (1.621) BS02 AVJ N/A GO:0046872 ... B1WTS6 39216472
    892825 8vii:B (1.621) BS03 CYS N/A GO:0046872 ... B1WTS6 39216472
    892826 8vij:A (1.35) BS01 HEM ? GO:0015671 ... A9DF82 N/A
    892827 8vij:B (1.35) BS01 HEM ? GO:0015671 ... A9DF82 N/A
    892828 8vij:C (1.35) BS01 HEM ? GO:0015671 ... A9DF82 N/A
    892829 8vij:D (1.35) BS01 HEM ? GO:0015671 ... A9DF82 N/A
    892830 8vik:A (1.961) BS01 FE N/A GO:0046872 ... B1WTS6 39216472
    892831 8vik:B (1.961) BS01 FE N/A GO:0046872 ... B1WTS6 39216472
    892832 8vil:A (1.95) BS01 FE N/A GO:0046872 ... B1WTS6 39216472
    892833 8vil:A (1.95) BS02 AVI N/A GO:0046872 ... B1WTS6 39216472
    892834 8vil:B (1.95) BS01 FE N/A GO:0046872 ... B1WTS6 39216472
    892835 8vio:1 (3.26) BS01 rna N/A N/A A0QR10 39913204
    892836 8vio:1 (3.26) BS02 rna N/A N/A A0QR10 39913204
    892837 8vio:2 (3.26) BS01 rna N/A N/A A0QSG7 39913204
    892838 8vio:2 (3.26) BS02 rna N/A N/A A0QSG7 39913204
    892839 8vio:4 (3.26) BS01 rna N/A N/A A0QVY1 39913204
    892840 8vio:C (3.26) BS01 rna N/A N/A A0QSD4 39913204
    892841 8vio:D (3.26) BS01 rna N/A N/A A0QSD1 39913204
    892842 8vio:E (3.26) BS01 rna N/A N/A A0QSD2 39913204
    892843 8vio:F (3.26) BS01 rna N/A N/A A0QSG1 39913204
    892844 8vio:F (3.26) BS02 rna N/A N/A A0QSG1 39913204
    892845 8vio:G (3.26) BS01 rna N/A N/A A0QSG4 39913204
    892846 8vio:H (3.26) BS01 rna N/A N/A A0R7F6 39913204
    892847 8vio:I (3.26) BS01 rna N/A N/A A0QS62 39913204
    892848 8vio:J (3.26) BS01 rna N/A N/A A0QS45 39913204
    892849 8vio:K (3.26) BS01 rna N/A N/A A0QSP8 39913204
    892850 8vio:L (3.26) BS01 rna N/A N/A A0QSF9 39913204
    892851 8vio:L (3.26) BS02 rna N/A N/A A0QSF9 39913204
    892852 8vio:M (3.26) BS01 rna N/A N/A A0QSG8 39913204
    892853 8vio:N (3.26) BS01 rna N/A N/A A0QSD8 39913204
    892854 8vio:O (3.26) BS01 rna N/A N/A A0QSL9 39913204
    892855 8vio:P (3.26) BS01 rna N/A N/A I7FGD9 39913204
    892856 8vio:P (3.26) BS02 rna N/A N/A I7FGD9 39913204
    892857 8vio:Q (3.26) BS01 rna N/A N/A A0QV42 39913204
    892858 8vio:Q (3.26) BS02 rna N/A N/A A0QV42 39913204
    892859 8vio:R (3.26) BS01 rna N/A N/A A0QYU6 39913204
    892860 8vio:S (3.26) BS01 rna N/A N/A A0R151 39913204
    892861 8vio:T (3.26) BS01 rna N/A N/A A0QSD6 39913204
    892862 8vio:U (3.26) BS01 rna N/A N/A A0QSD3 39913204
    892863 8vio:V (3.26) BS01 rna N/A N/A A0QSG0 39913204
    892864 8vio:W (3.26) BS01 rna N/A N/A A0R3D2 39913204
    892865 8vio:W (3.26) BS02 rna N/A N/A A0R3D2 39913204
    892866 8vio:X (3.26) BS01 rna N/A N/A A0R150 39913204
    892867 8vio:Y (3.26) BS01 rna N/A N/A I7FJ52 39913204
    892868 8vio:Z (3.26) BS01 rna N/A N/A A0QSD9 39913204
    892869 8vio:b (3.26) BS01 rna N/A N/A A0R3I9 39913204
    892870 8vio:c (3.26) BS01 rna N/A N/A A0QS39 39913204
    892871 8vio:d (3.26) BS01 rna N/A N/A A0R7K0 39913204
    892872 8vio:e (3.26) BS01 rna N/A N/A A0QYU7 39913204
    892873 8vio:f (3.26) BS01 rna N/A N/A A0QSL4 39913204
    892874 8vio:g (3.26) BS01 rna N/A N/A A0R215 39913204
    892875 8vio:h (3.26) BS01 rna N/A N/A A0QVB8 39913204
    892876 8vio:i (3.26) BS01 rna N/A N/A A0QSD7 39913204
    892877 8vio:j (3.26) BS01 rna N/A N/A A0QSL7 39913204
    892878 8vio:k (3.26) BS01 rna N/A N/A A0QSG6 39913204
    892879 8vio:l (3.26) BS01 rna N/A N/A A0A2U9Q0X2 39913204
    892880 8vio:m (3.26) BS01 rna N/A N/A A0QS97 39913204
    892881 8vio:n (3.26) BS01 rna N/A N/A A0QSG3 39913204
    892882 8vio:o (3.26) BS01 rna N/A N/A A0QSP9 39913204
    892883 8vio:o (3.26) BS02 rna N/A N/A A0QSP9 39913204
    892884 8vio:p (3.26) BS01 rna N/A N/A A0QSD0 39913204
    892885 8vio:q (3.26) BS01 rna N/A N/A A0QSL6 39913204
    892886 8vio:r (3.26) BS01 rna N/A N/A A0R7F7 39913204
    892887 8vio:s (3.26) BS01 rna N/A N/A A0QS96 39913204
    892888 8vio:t (3.26) BS01 rna N/A N/A A0QSL5 39913204
    892889 8vio:u (3.26) BS01 rna N/A N/A A0QSG2 39913204
    892890 8vio:v (3.26) BS01 rna N/A N/A A0QVQ3 39913204
    892891 8vio:v (3.26) BS02 rna N/A N/A A0QVQ3 39913204
    892892 8vio:w (3.26) BS01 rna N/A N/A A0QV37 39913204
    892893 8vio:x (3.26) BS01 rna N/A N/A A0QSE0 39913204
    892894 8vio:y (3.26) BS01 rna N/A N/A A0QSD5 39913204
    892895 8vio:z (3.26) BS01 rna N/A N/A A0R102 39913204
    892896 8vip:A (1.77) BS01 ANP N/A N/A Q2FZ58 39454961
    892897 8vip:A (1.77) BS02 MN N/A N/A Q2FZ58 39454961
    892898 8vip:A (1.77) BS03 MN N/A N/A Q2FZ58 39454961
    892899 8viq:A (1.1) BS01 ANP N/A N/A Q2FZ58 39454961
    892900 8viq:A (1.1) BS02 MG N/A N/A Q2FZ58 39454961
    892901 8viq:A (1.1) BS03 MG N/A N/A Q2FZ58 39454961
    892902 8vis:B (1.59) BS01 peptide 3.4.21.- GO:0004252 ... O60235 N/A
    892903 8vis:D (1.59) BS01 peptide 3.4.21.- GO:0004252 ... O60235 N/A
    892904 8vis:D (1.59) BS02 peptide 3.4.21.- GO:0004252 ... O60235 N/A
    892905 8vis:F (1.59) BS01 peptide 3.4.21.- GO:0004252 ... O60235 N/A
    892906 8vis:H (1.59) BS01 peptide 3.4.21.- GO:0004252 ... O60235 N/A
    892907 8vis:H (1.59) BS02 peptide 3.4.21.- GO:0004252 ... O60235 N/A
    892908 8vit:A (1.25) BS01 ADP N/A N/A Q2FZ58 39454961
    892909 8vit:A (1.25) BS02 MG N/A N/A Q2FZ58 39454961
    892910 8vit:A (1.25) BS03 MG N/A N/A Q2FZ58 39454961
    892911 8viv:A (2.2) BS01 rna N/A N/A Q09312 N/A
    892912 8viw:A (3.3) BS01 BDP N/A N/A Q5SGE1 N/A
    892913 8viw:A (3.3) BS02 GNS N/A N/A Q5SGE1 N/A
    892914 8viw:A (3.3) BS03 BDP N/A N/A Q5SGE1 N/A
    892915 8viw:A (3.3) BS04 GNS N/A N/A Q5SGE1 N/A
    892916 8viw:A (3.3) BS05 UDP N/A N/A Q5SGE1 N/A
    892917 8viw:A (3.3) BS06 MN N/A N/A Q5SGE1 N/A
    892918 8viw:A (3.3) BS07 UDP N/A N/A Q5SGE1 N/A
    892919 8viw:B (3.3) BS01 GNS N/A N/A Q5SGE1 N/A
    892920 8viw:B (3.3) BS02 BDP N/A N/A Q5SGE1 N/A
    892921 8viw:B (3.3) BS03 GNS N/A N/A Q5SGE1 N/A
    892922 8viw:B (3.3) BS04 BDP N/A N/A Q5SGE1 N/A
    892923 8viw:B (3.3) BS05 UDP N/A N/A Q5SGE1 N/A
    892924 8viw:B (3.3) BS06 MN N/A N/A Q5SGE1 N/A
    892925 8viw:B (3.3) BS07 UDP N/A N/A Q5SGE1 N/A
    892926 8viw:C (3.3) BS01 BDP N/A N/A Q5SGE1 N/A
    892927 8viw:C (3.3) BS02 GNS N/A N/A Q5SGE1 N/A
    892928 8viw:C (3.3) BS03 BDP N/A N/A Q5SGE1 N/A
    892929 8viw:C (3.3) BS04 GNS N/A N/A Q5SGE1 N/A
    892930 8viw:C (3.3) BS05 UDP N/A N/A Q5SGE1 N/A
    892931 8viw:C (3.3) BS06 MN N/A N/A Q5SGE1 N/A
    892932 8viw:C (3.3) BS07 UDP N/A N/A Q5SGE1 N/A
    892933 8viw:D (3.3) BS01 GNS N/A N/A Q5SGE1 N/A
    892934 8viw:D (3.3) BS02 BDP N/A N/A Q5SGE1 N/A
    892935 8viw:D (3.3) BS03 GNS N/A N/A Q5SGE1 N/A
    892936 8viw:D (3.3) BS04 BDP N/A N/A Q5SGE1 N/A
    892937 8viw:D (3.3) BS05 UDP N/A N/A Q5SGE1 N/A
    892938 8viw:D (3.3) BS06 MN N/A N/A Q5SGE1 N/A
    892939 8viw:D (3.3) BS07 UDP N/A N/A Q5SGE1 N/A
    892940 8vix:A (2.31) BS01 CA N/A N/A O81959 N/A
    892941 8vix:B (2.31) BS01 CA N/A N/A O81959 N/A
    892942 8viy:A (2.34) BS01 FE2 N/A GO:0001676 ... O15296 38601784
    892943 8viy:A (2.34) BS02 C8E N/A GO:0001676 ... O15296 38601784
    892944 8viy:A (2.34) BS03 C8E N/A GO:0001676 ... O15296 38601784
    892945 8viy:A (2.34) BS04 CA N/A GO:0001676 ... O15296 38601784
    892946 8viy:A (2.34) BS05 CA N/A GO:0001676 ... O15296 38601784
    892947 8viz:A (2.63) BS01 ADP N/A GO:0000287 ... P68135 39448849
    892948 8viz:B (2.63) BS01 ADP N/A GO:0000287 ... P68135 39448849
    892949 8viz:C (2.63) BS01 ADP N/A GO:0000287 ... P68135 39448849
    892950 8viz:D (2.63) BS01 ADP N/A GO:0000287 ... P68135 39448849
    892951 8viz:E (2.63) BS01 ADP N/A GO:0000287 ... P68135 39448849
    892952 8viz:F (2.63) BS01 ATP N/A GO:0000287 ... P68135 39448849
    892953 8viz:G (2.63) BS01 CA N/A GO:0002102 ... P06396 39448849
    892954 8viz:G (2.63) BS02 CA N/A GO:0002102 ... P06396 39448849
    892955 8viz:G (2.63) BS03 CA N/A GO:0002102 ... P06396 39448849
    892956 8viz:G (2.63) BS04 CA N/A GO:0002102 ... P06396 39448849
    892957 8viz:G (2.63) BS05 CA N/A GO:0002102 ... P06396 39448849
    892958 8viz:G (2.63) BS06 CA N/A GO:0002102 ... P06396 39448849
    892959 8viz:G (2.63) BS07 CA N/A GO:0002102 ... P06396 39448849
    892960 8viz:G (2.63) BS08 CA N/A GO:0002102 ... P06396 39448849
    892961 8vj0:A (2.3) BS01 MN N/A GO:0000302 ... P04179 39013847
    892962 8vj0:B (2.3) BS01 MN N/A GO:0000302 ... P04179 39013847
    892963 8vj3:A (1.9) BS01 FAD 1.2.1.8 GO:0000166 ... A0A0H3FPU4 N/A
    892964 8vj3:B (1.9) BS01 FAD 1.2.1.8 GO:0000166 ... A0A0H3FPU4 N/A
    892965 8vj3:C (1.9) BS01 FAD 1.2.1.8 GO:0000166 ... A0A0H3FPU4 N/A
    892966 8vj3:D (1.9) BS01 FAD 1.2.1.8 GO:0000166 ... A0A0H3FPU4 N/A
    892967 8vj4:A (1.68) BS01 MN N/A GO:0000302 ... P04179 39013847
    892968 8vj4:B (1.68) BS01 MN N/A GO:0000302 ... P04179 39013847
    892969 8vj5:A (1.76) BS01 MN N/A GO:0000302 ... P04179 39013847
    892970 8vj5:B (1.76) BS01 MN N/A GO:0000302 ... P04179 39013847
    892971 8vj6:A (3.5) BS01 A1AB5 ? GO:0000149 ... P19491 38834914
    892972 8vj6:B (3.5) BS01 A1AB5 ? GO:0000149 ... P19491 38834914
    892973 8vj6:C (3.5) BS01 A1AB5 ? GO:0000149 ... P19491 38834914
    892974 8vj6:D (3.5) BS01 A1AB5 ? GO:0000149 ... P19491 38834914
    892975 8vj7:A (4.85) BS01 GLU ? GO:0000149 ... P19491 38834914
    892976 8vj7:A (4.85) BS02 A1AB5 ? GO:0000149 ... P19491 38834914
    892977 8vj7:B (4.85) BS01 GLU ? GO:0000149 ... P19491 38834914
    892978 8vj7:B (4.85) BS02 A1AB5 ? GO:0000149 ... P19491 38834914
    892979 8vj7:C (4.85) BS01 GLU ? GO:0000149 ... P19491 38834914
    892980 8vj7:C (4.85) BS02 A1AB5 ? GO:0000149 ... P19491 38834914
    892981 8vj7:D (4.85) BS01 GLU ? GO:0000149 ... P19491 38834914
    892982 8vj7:D (4.85) BS02 A1AB5 ? GO:0000149 ... P19491 38834914
    892983 8vj8:A (1.7) BS01 MN N/A GO:0000302 ... P04179 39013847
    892984 8vj8:B (1.7) BS01 MN N/A GO:0000302 ... P04179 39013847
    892985 8vj9:A (3.3) BS01 peptide N/A N/A P32120 N/A
    892986 8vjd:A (1.57) BS01 peptide N/A GO:0000413 ... Q13526 N/A
    892987 8vjd:A (1.57) BS02 peptide N/A GO:0000413 ... Q13526 N/A
    892988 8vjd:B (1.57) BS01 peptide N/A GO:0000413 ... Q13526 N/A
    892989 8vje:A (1.7) BS01 peptide N/A GO:0000413 ... Q13526 N/A
    892990 8vjf:A (1.7) BS01 peptide N/A GO:0000413 ... Q13526 N/A
    892991 8vjg:A (1.58) BS01 A1ACH N/A GO:0000413 ... Q13526 N/A
    892992 8vjh:D (4.2) BS01 FE N/A N/A M9NUT0 38614087
    892993 8vjj:A (2.53) BS01 ZN ? GO:0002020 ... E9PZQ0 38917010
    892994 8vjj:B (2.53) BS01 ZN ? GO:0002020 ... E9PZQ0 38917010
    892995 8vjj:C (2.53) BS01 ZN ? GO:0002020 ... E9PZQ0 38917010
    892996 8vjj:D (2.53) BS01 ZN ? GO:0002020 ... E9PZQ0 38917010
    892997 8vjk:A (2.92) BS01 ZN ? GO:0002020 ... E9PZQ0 38917010
    892998 8vjk:A (2.92) BS02 CFF ? GO:0002020 ... E9PZQ0 38917010
    892999 8vjk:A (2.92) BS03 ATP ? GO:0002020 ... E9PZQ0 38917010
    893000 8vjk:A (2.92) BS04 CA ? GO:0002020 ... E9PZQ0 38917010

    Reference:
  • Chengxin Zhang, Xi Zhang, Lydia Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).