SEQ2FUN

BioLiP
Download all results in tab-seperated text for 1072681 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
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  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.
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    # PDB
    (Resolution Å)
    Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    893001 8ujg:B (2.27) BS01 MN 2.4.1.41 N/A A0A125YMZ8 38710711
    893002 8ujg:B (2.27) BS02 MN 2.4.1.41 N/A A0A125YMZ8 38710711
    893003 8ujg:B (2.27) BS03 UDP 2.4.1.41 N/A A0A125YMZ8 38710711
    893004 8ujh:A (2.65) BS01 peptide 2.4.1.41 N/A A0A125YMZ8 38710711
    893005 8ujh:A (2.65) BS02 UDP 2.4.1.41 N/A A0A125YMZ8 38710711
    893006 8ujh:A (2.65) BS03 MN 2.4.1.41 N/A A0A125YMZ8 38710711
    893007 8ujh:A (2.65) BS04 MN 2.4.1.41 N/A A0A125YMZ8 38710711
    893008 8uji:A (1.95) BS01 peptide N/A N/A N/A 39574610
    893009 8uji:B (1.95) BS01 peptide N/A N/A N/A 39574610
    893010 8uji:H (1.95) BS01 peptide N/A N/A N/A 39574610
    893011 8uji:L (1.95) BS01 peptide N/A N/A N/A 39574610
    893012 8ujm:A (2.161) BS01 MG ?
    3.1.3.16
    GO:0016791 ... O95476
    Q8N9A8
    38776370
    893013 8ujm:B (2.161) BS01 MG ?
    3.1.3.16
    GO:0016791 ... O95476
    Q8N9A8
    38776370
    893014 8ujt:A (2.31) BS01 dna 2.7.7.7 GO:0003684 ... Q9Y253 38413007
    893015 8ujt:A (2.31) BS02 dna 2.7.7.7 GO:0003684 ... Q9Y253 38413007
    893016 8ujt:A (2.31) BS03 DZ4 2.7.7.7 GO:0003684 ... Q9Y253 38413007
    893017 8ujt:A (2.31) BS04 MG 2.7.7.7 GO:0003684 ... Q9Y253 38413007
    893018 8ujt:A (2.31) BS05 MG 2.7.7.7 GO:0003684 ... Q9Y253 38413007
    893019 8ujv:A (2.23) BS01 dna 2.7.7.7 GO:0003684 ... Q9Y253 38413007
    893020 8ujv:A (2.23) BS02 dna 2.7.7.7 GO:0003684 ... Q9Y253 38413007
    893021 8ujv:A (2.23) BS03 0KX 2.7.7.7 GO:0003684 ... Q9Y253 38413007
    893022 8ujv:A (2.23) BS04 MG 2.7.7.7 GO:0003684 ... Q9Y253 38413007
    893023 8ujv:A (2.23) BS05 MG 2.7.7.7 GO:0003684 ... Q9Y253 38413007
    893024 8ujx:A (2.17) BS01 dna 2.7.7.7 GO:0003684 ... Q9Y253 38413007
    893025 8ujx:A (2.17) BS02 dna 2.7.7.7 GO:0003684 ... Q9Y253 38413007
    893026 8ujx:A (2.17) BS03 XG4 2.7.7.7 GO:0003684 ... Q9Y253 38413007
    893027 8ujx:A (2.17) BS04 MG 2.7.7.7 GO:0003684 ... Q9Y253 38413007
    893028 8ujx:A (2.17) BS05 MG 2.7.7.7 GO:0003684 ... Q9Y253 38413007
    893029 8ujy:A (2.01) BS01 VV3 ? GO:0000122 ... P61964 38085679
    893030 8ujy:B (2.01) BS01 VV3 ? GO:0000122 ... P61964 38085679
    893031 8uk2:a (8.0) BS01 CA ? GO:0019028 ... P12476 38574119
    893032 8uk2:a (8.0) BS02 CA ? GO:0019028 ... P12476 38574119
    893033 8uk2:a (8.0) BS03 CA ? GO:0019028 ... P12476 38574119
    893034 8uk2:b (8.0) BS01 CA ? GO:0019028 ... P12476 38574119
    893035 8uk2:b (8.0) BS02 CA ? GO:0019028 ... P12476 38574119
    893036 8uk2:b (8.0) BS03 CA ? GO:0019028 ... P12476 38574119
    893037 8uk2:c (8.0) BS01 CA ? GO:0019028 ... P12476 38574119
    893038 8uk2:c (8.0) BS02 CA ? GO:0019028 ... P12476 38574119
    893039 8uk2:c (8.0) BS03 CA ? GO:0019028 ... P12476 38574119
    893040 8uk2:d (8.0) BS01 CA ? GO:0019028 ... P12476 38574119
    893041 8uk2:d (8.0) BS02 CA ? GO:0019028 ... P12476 38574119
    893042 8uk2:d (8.0) BS03 CA ? GO:0019028 ... P12476 38574119
    893043 8uk2:e (8.0) BS01 CA ? GO:0019028 ... P12476 38574119
    893044 8uk2:e (8.0) BS02 CA ? GO:0019028 ... P12476 38574119
    893045 8uk2:e (8.0) BS03 CA ? GO:0019028 ... P12476 38574119
    893046 8uk2:f (8.0) BS01 CA ? GO:0019028 ... P12476 38574119
    893047 8uk2:f (8.0) BS02 CA ? GO:0019028 ... P12476 38574119
    893048 8uk2:f (8.0) BS03 CA ? GO:0019028 ... P12476 38574119
    893049 8uk2:g (8.0) BS01 CA ? GO:0019028 ... P12476 38574119
    893050 8uk2:g (8.0) BS02 CA ? GO:0019028 ... P12476 38574119
    893051 8uk2:g (8.0) BS03 CA ? GO:0019028 ... P12476 38574119
    893052 8uk2:h (8.0) BS01 CA ? GO:0019028 ... P12476 38574119
    893053 8uk2:h (8.0) BS02 CA ? GO:0019028 ... P12476 38574119
    893054 8uk2:h (8.0) BS03 CA ? GO:0019028 ... P12476 38574119
    893055 8uk2:i (8.0) BS01 CA ? GO:0019028 ... P12476 38574119
    893056 8uk2:i (8.0) BS02 CA ? GO:0019028 ... P12476 38574119
    893057 8uk2:i (8.0) BS03 CA ? GO:0019028 ... P12476 38574119
    893058 8uk2:j (8.0) BS01 CA ? GO:0019028 ... P12476 38574119
    893059 8uk2:j (8.0) BS02 CA ? GO:0019028 ... P12476 38574119
    893060 8uk2:j (8.0) BS03 CA ? GO:0019028 ... P12476 38574119
    893061 8uk2:k (8.0) BS01 CA ? GO:0019028 ... P12476 38574119
    893062 8uk2:k (8.0) BS02 CA ? GO:0019028 ... P12476 38574119
    893063 8uk2:k (8.0) BS03 CA ? GO:0019028 ... P12476 38574119
    893064 8uk2:l (8.0) BS01 CA ? GO:0019028 ... P12476 38574119
    893065 8uk2:l (8.0) BS02 CA ? GO:0019028 ... P12476 38574119
    893066 8uk2:l (8.0) BS03 CA ? GO:0019028 ... P12476 38574119
    893067 8uk2:m (8.0) BS01 CA ? GO:0019028 ... P12476 38574119
    893068 8uk2:m (8.0) BS02 CA ? GO:0019028 ... P12476 38574119
    893069 8uk2:m (8.0) BS03 CA ? GO:0019028 ... P12476 38574119
    893070 8uk2:n (8.0) BS01 CA ? GO:0019028 ... P12476 38574119
    893071 8uk2:n (8.0) BS02 CA ? GO:0019028 ... P12476 38574119
    893072 8uk2:n (8.0) BS03 CA ? GO:0019028 ... P12476 38574119
    893073 8uk2:o (8.0) BS01 CA ? GO:0019028 ... P12476 38574119
    893074 8uk2:o (8.0) BS02 CA ? GO:0019028 ... P12476 38574119
    893075 8uk2:o (8.0) BS03 CA ? GO:0019028 ... P12476 38574119
    893076 8uk2:p (8.0) BS01 CA ? GO:0019028 ... P12476 38574119
    893077 8uk2:p (8.0) BS02 CA ? GO:0019028 ... P12476 38574119
    893078 8uk2:p (8.0) BS03 CA ? GO:0019028 ... P12476 38574119
    893079 8uk2:q (8.0) BS01 CA ? GO:0019028 ... P12476 38574119
    893080 8uk2:q (8.0) BS02 CA ? GO:0019028 ... P12476 38574119
    893081 8uk2:q (8.0) BS03 CA ? GO:0019028 ... P12476 38574119
    893082 8uk2:r (8.0) BS01 CA ? GO:0019028 ... P12476 38574119
    893083 8uk2:r (8.0) BS02 CA ? GO:0019028 ... P12476 38574119
    893084 8uk2:r (8.0) BS03 CA ? GO:0019028 ... P12476 38574119
    893085 8uk3:a (8.0) BS01 CA ? GO:0019028 ... P12476 38574119
    893086 8uk3:a (8.0) BS02 CA ? GO:0019028 ... P12476 38574119
    893087 8uk3:a (8.0) BS03 CA ? GO:0019028 ... P12476 38574119
    893088 8uk3:b (8.0) BS01 CA ? GO:0019028 ... P12476 38574119
    893089 8uk3:b (8.0) BS02 CA ? GO:0019028 ... P12476 38574119
    893090 8uk3:b (8.0) BS03 CA ? GO:0019028 ... P12476 38574119
    893091 8uk3:c (8.0) BS01 CA ? GO:0019028 ... P12476 38574119
    893092 8uk3:c (8.0) BS02 CA ? GO:0019028 ... P12476 38574119
    893093 8uk3:c (8.0) BS03 CA ? GO:0019028 ... P12476 38574119
    893094 8uk3:d (8.0) BS01 CA ? GO:0019028 ... P12476 38574119
    893095 8uk3:d (8.0) BS02 CA ? GO:0019028 ... P12476 38574119
    893096 8uk3:d (8.0) BS03 CA ? GO:0019028 ... P12476 38574119
    893097 8uk3:e (8.0) BS01 CA ? GO:0019028 ... P12476 38574119
    893098 8uk3:e (8.0) BS02 CA ? GO:0019028 ... P12476 38574119
    893099 8uk3:e (8.0) BS03 CA ? GO:0019028 ... P12476 38574119
    893100 8uk3:f (8.0) BS01 CA ? GO:0019028 ... P12476 38574119
    893101 8uk3:f (8.0) BS02 CA ? GO:0019028 ... P12476 38574119
    893102 8uk3:f (8.0) BS03 CA ? GO:0019028 ... P12476 38574119
    893103 8uk3:g (8.0) BS01 CA ? GO:0019028 ... P12476 38574119
    893104 8uk3:g (8.0) BS02 CA ? GO:0019028 ... P12476 38574119
    893105 8uk3:g (8.0) BS03 CA ? GO:0019028 ... P12476 38574119
    893106 8uk3:h (8.0) BS01 CA ? GO:0019028 ... P12476 38574119
    893107 8uk3:h (8.0) BS02 CA ? GO:0019028 ... P12476 38574119
    893108 8uk3:h (8.0) BS03 CA ? GO:0019028 ... P12476 38574119
    893109 8uk3:i (8.0) BS01 CA ? GO:0019028 ... P12476 38574119
    893110 8uk3:i (8.0) BS02 CA ? GO:0019028 ... P12476 38574119
    893111 8uk3:i (8.0) BS03 CA ? GO:0019028 ... P12476 38574119
    893112 8uk3:j (8.0) BS01 CA ? GO:0019028 ... P12476 38574119
    893113 8uk3:j (8.0) BS02 CA ? GO:0019028 ... P12476 38574119
    893114 8uk3:j (8.0) BS03 CA ? GO:0019028 ... P12476 38574119
    893115 8uk3:k (8.0) BS01 CA ? GO:0019028 ... P12476 38574119
    893116 8uk3:k (8.0) BS02 CA ? GO:0019028 ... P12476 38574119
    893117 8uk3:k (8.0) BS03 CA ? GO:0019028 ... P12476 38574119
    893118 8uk3:l (8.0) BS01 CA ? GO:0019028 ... P12476 38574119
    893119 8uk3:l (8.0) BS02 CA ? GO:0019028 ... P12476 38574119
    893120 8uk3:l (8.0) BS03 CA ? GO:0019028 ... P12476 38574119
    893121 8uk3:m (8.0) BS01 CA ? GO:0019028 ... P12476 38574119
    893122 8uk3:m (8.0) BS02 CA ? GO:0019028 ... P12476 38574119
    893123 8uk3:m (8.0) BS03 CA ? GO:0019028 ... P12476 38574119
    893124 8uk3:n (8.0) BS01 CA ? GO:0019028 ... P12476 38574119
    893125 8uk3:n (8.0) BS02 CA ? GO:0019028 ... P12476 38574119
    893126 8uk3:n (8.0) BS03 CA ? GO:0019028 ... P12476 38574119
    893127 8uk3:o (8.0) BS01 CA ? GO:0019028 ... P12476 38574119
    893128 8uk3:o (8.0) BS02 CA ? GO:0019028 ... P12476 38574119
    893129 8uk3:o (8.0) BS03 CA ? GO:0019028 ... P12476 38574119
    893130 8uk3:p (8.0) BS01 CA ? GO:0019028 ... P12476 38574119
    893131 8uk3:p (8.0) BS02 CA ? GO:0019028 ... P12476 38574119
    893132 8uk3:p (8.0) BS03 CA ? GO:0019028 ... P12476 38574119
    893133 8uk3:q (8.0) BS01 CA ? GO:0019028 ... P12476 38574119
    893134 8uk3:q (8.0) BS02 CA ? GO:0019028 ... P12476 38574119
    893135 8uk3:q (8.0) BS03 CA ? GO:0019028 ... P12476 38574119
    893136 8uk3:r (8.0) BS01 CA ? GO:0019028 ... P12476 38574119
    893137 8uk3:r (8.0) BS02 CA ? GO:0019028 ... P12476 38574119
    893138 8uk3:r (8.0) BS03 CA ? GO:0019028 ... P12476 38574119
    893139 8uk4:A (3.02) BS01 dna 2.7.7.7 GO:0003684 ... Q9Y253 38413007
    893140 8uk4:A (3.02) BS02 dna 2.7.7.7 GO:0003684 ... Q9Y253 38413007
    893141 8uk4:A (3.02) BS03 1FZ 2.7.7.7 GO:0003684 ... Q9Y253 38413007
    893142 8uk4:A (3.02) BS04 MG 2.7.7.7 GO:0003684 ... Q9Y253 38413007
    893143 8uk5:A (1.4) BS01 peptide ? N/A Q9ULI0 38733345
    893144 8uk6:A (2.73) BS01 ZN 6.1.1.18 GO:0000166 ... A0A1D8PQM9 38402621
    893145 8uk6:A (2.73) BS02 WVK 6.1.1.18 GO:0000166 ... A0A1D8PQM9 38402621
    893146 8uk9:A (3.1) BS01 dna ? GO:0003677 ... P04527 38177685
    893147 8uk9:B (3.1) BS01 dna 3.6.4.- GO:0000166 ... P04526 38177685
    893148 8uk9:B (3.1) BS02 AF3 3.6.4.- GO:0000166 ... P04526 38177685
    893149 8uk9:B (3.1) BS03 ADP 3.6.4.- GO:0000166 ... P04526 38177685
    893150 8uk9:B (3.1) BS04 MG 3.6.4.- GO:0000166 ... P04526 38177685
    893151 8uk9:C (3.1) BS01 dna 3.6.4.- GO:0000166 ... P04526 38177685
    893152 8uk9:C (3.1) BS02 MG 3.6.4.- GO:0000166 ... P04526 38177685
    893153 8uk9:C (3.1) BS03 AF3 3.6.4.- GO:0000166 ... P04526 38177685
    893154 8uk9:C (3.1) BS04 ADP 3.6.4.- GO:0000166 ... P04526 38177685
    893155 8uk9:D (3.1) BS01 dna 3.6.4.- GO:0000166 ... P04526 38177685
    893156 8uk9:D (3.1) BS02 MG 3.6.4.- GO:0000166 ... P04526 38177685
    893157 8uk9:D (3.1) BS03 AF3 3.6.4.- GO:0000166 ... P04526 38177685
    893158 8uk9:D (3.1) BS04 ADP 3.6.4.- GO:0000166 ... P04526 38177685
    893159 8uk9:E (3.1) BS01 dna 3.6.4.- GO:0000166 ... P04526 38177685
    893160 8uk9:E (3.1) BS02 ADP 3.6.4.- GO:0000166 ... P04526 38177685
    893161 8uk9:K (3.1) BS01 dna 3.6.4.- GO:0000166 ... P04526 38177685
    893162 8uk9:K (3.1) BS02 MG 3.6.4.- GO:0000166 ... P04526 38177685
    893163 8uk9:K (3.1) BS03 AF3 3.6.4.- GO:0000166 ... P04526 38177685
    893164 8uk9:K (3.1) BS04 ADP 3.6.4.- GO:0000166 ... P04526 38177685
    893165 8uk9:L (3.1) BS01 dna 3.6.4.- GO:0000166 ... P04526 38177685
    893166 8uk9:L (3.1) BS02 MG 3.6.4.- GO:0000166 ... P04526 38177685
    893167 8uk9:L (3.1) BS03 AF3 3.6.4.- GO:0000166 ... P04526 38177685
    893168 8uk9:L (3.1) BS04 ADP 3.6.4.- GO:0000166 ... P04526 38177685
    893169 8uk9:M (3.1) BS01 dna 3.6.4.- GO:0000166 ... P04526 38177685
    893170 8uk9:M (3.1) BS02 MG 3.6.4.- GO:0000166 ... P04526 38177685
    893171 8uk9:M (3.1) BS03 AF3 3.6.4.- GO:0000166 ... P04526 38177685
    893172 8uk9:M (3.1) BS04 ADP 3.6.4.- GO:0000166 ... P04526 38177685
    893173 8uk9:N (3.1) BS01 dna 3.6.4.- GO:0000166 ... P04526 38177685
    893174 8uk9:N (3.1) BS02 ADP 3.6.4.- GO:0000166 ... P04526 38177685
    893175 8uk9:Q (3.1) BS01 dna ? GO:0003677 ... P04527 38177685
    893176 8uk9:Q (3.1) BS02 dna ? GO:0003677 ... P04527 38177685
    893177 8ukb:CB (3.05) BS01 rna N/A GO:0002039 ... P13639 N/A
    893178 8ukb:CB (3.05) BS02 rna N/A GO:0002039 ... P13639 N/A
    893179 8ukb:CD (3.05) BS01 rna N/A GO:0003723 ... Q8NC51 N/A
    893180 8ukb:LA (3.05) BS01 rna N/A GO:0002181 ... P62917 N/A
    893181 8ukb:LA (3.05) BS02 MG N/A GO:0002181 ... P62917 N/A
    893182 8ukb:LB (3.05) BS01 rna N/A GO:0002181 ... P39023 N/A
    893183 8ukb:LC (3.05) BS01 rna N/A GO:0003735 ... P36578 N/A
    893184 8ukb:LC (3.05) BS02 rna N/A GO:0003735 ... P36578 N/A
    893185 8ukb:LD (3.05) BS01 rna N/A GO:0000027 ... P46777 N/A
    893186 8ukb:LD (3.05) BS02 rna N/A GO:0000027 ... P46777 N/A
    893187 8ukb:LE (3.05) BS01 rna N/A GO:0003735 ... Q02878 N/A
    893188 8ukb:LF (3.05) BS01 rna N/A GO:0000463 ... P18124 N/A
    893189 8ukb:LF (3.05) BS02 rna N/A GO:0000463 ... P18124 N/A
    893190 8ukb:LG (3.05) BS01 rna N/A GO:0000470 ... P62424 N/A
    893191 8ukb:LG (3.05) BS02 rna N/A GO:0000470 ... P62424 N/A
    893192 8ukb:LH (3.05) BS01 rna N/A GO:0002181 ... P32969 N/A
    893193 8ukb:LI (3.05) BS01 rna N/A GO:0000027 ... Q96L21 N/A
    893194 8ukb:LI (3.05) BS02 rna N/A GO:0000027 ... Q96L21 N/A
    893195 8ukb:LJ (3.05) BS01 rna N/A GO:0000027 ... P62913 N/A
    893196 8ukb:LJ (3.05) BS02 rna N/A GO:0000027 ... P62913 N/A
    893197 8ukb:LL (3.05) BS01 rna N/A GO:0002181 ... P26373 N/A
    893198 8ukb:LL (3.05) BS02 rna N/A GO:0002181 ... P26373 N/A
    893199 8ukb:LM (3.05) BS01 rna N/A GO:0003723 ... P50914 N/A
    893200 8ukb:LN (3.05) BS01 rna N/A GO:0002181 ... P61313 N/A

    Reference:
  • Chengxin Zhang, Xi Zhang, Lydia Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).