SEQ2FUN

BioLiP
Download all results in tab-seperated text for 942758 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
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  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
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    # PDB
    (Resolution Å)
    Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    893201 8vki:4 (2.96) BS01 rna N/A N/A A0QVY1 39913204
    893202 8vki:C (2.96) BS01 rna N/A N/A A0QSD4 39913204
    893203 8vki:D (2.96) BS01 rna N/A N/A A0QSD1 39913204
    893204 8vki:E (2.96) BS01 rna N/A N/A A0QSD2 39913204
    893205 8vki:F (2.96) BS01 rna N/A N/A A0QSG1 39913204
    893206 8vki:F (2.96) BS02 rna N/A N/A A0QSG1 39913204
    893207 8vki:G (2.96) BS01 rna N/A N/A A0QSG4 39913204
    893208 8vki:H (2.96) BS01 rna N/A N/A A0R7F6 39913204
    893209 8vki:I (2.96) BS01 rna N/A N/A A0QS62 39913204
    893210 8vki:J (2.96) BS01 rna N/A N/A A0QS45 39913204
    893211 8vki:K (2.96) BS01 rna N/A N/A A0QSP8 39913204
    893212 8vki:L (2.96) BS01 rna N/A N/A A0QSF9 39913204
    893213 8vki:M (2.96) BS01 rna N/A N/A A0QSG8 39913204
    893214 8vki:N (2.96) BS01 rna N/A N/A A0QSD8 39913204
    893215 8vki:O (2.96) BS01 rna N/A N/A A0QSL9 39913204
    893216 8vki:P (2.96) BS01 rna N/A N/A I7FGD9 39913204
    893217 8vki:P (2.96) BS02 rna N/A N/A I7FGD9 39913204
    893218 8vki:Q (2.96) BS01 rna N/A N/A A0QV42 39913204
    893219 8vki:R (2.96) BS01 rna N/A N/A A0QYU6 39913204
    893220 8vki:S (2.96) BS01 rna N/A N/A A0R151 39913204
    893221 8vki:T (2.96) BS01 rna N/A N/A A0QSD6 39913204
    893222 8vki:U (2.96) BS01 rna N/A N/A A0QSD3 39913204
    893223 8vki:V (2.96) BS01 rna N/A N/A A0QSG0 39913204
    893224 8vki:W (2.96) BS01 rna N/A N/A A0R3D2 39913204
    893225 8vki:X (2.96) BS01 rna N/A N/A A0R150 39913204
    893226 8vki:Y (2.96) BS01 rna N/A N/A I7FJ52 39913204
    893227 8vki:Z (2.96) BS01 rna N/A N/A A0QSD9 39913204
    893228 8vki:b (2.96) BS01 rna N/A N/A A0R3I9 39913204
    893229 8vki:c (2.96) BS01 rna N/A N/A A0QS39 39913204
    893230 8vki:d (2.96) BS01 rna N/A N/A A0R7K0 39913204
    893231 8vki:e (2.96) BS01 rna N/A N/A A0QYU7 39913204
    893232 8vki:f (2.96) BS01 rna N/A N/A A0QSL4 39913204
    893233 8vkj:A (2.92) BS01 ACO N/A GO:0005764 ... Q68CP4 38918376
    893234 8vkj:B (2.92) BS01 ACO N/A GO:0005764 ... Q68CP4 38918376
    893235 8vkt:A (1.398) BS01 ZN 3.5.1.18 GO:0009014 ... A0A1S8KJG1 38740150
    893236 8vkt:A (1.398) BS02 ZN 3.5.1.18 GO:0009014 ... A0A1S8KJG1 38740150
    893237 8vku:A (3.5) BS01 A1AC1 N/A GO:0000502 ... P55072 38833472
    893238 8vku:B (3.5) BS01 A1AC1 N/A GO:0000502 ... P55072 38833472
    893239 8vku:C (3.5) BS01 A1AC1 N/A GO:0000502 ... P55072 38833472
    893240 8vku:D (3.5) BS01 A1AC1 N/A GO:0000502 ... P55072 38833472
    893241 8vku:E (3.5) BS01 A1AC1 N/A GO:0000502 ... P55072 38833472
    893242 8vku:F (3.5) BS01 A1AC1 N/A GO:0000502 ... P55072 38833472
    893243 8vkw:2 (3.44) BS01 rna N/A N/A A0QSG7 39913204
    893244 8vkw:2 (3.44) BS02 rna N/A N/A A0QSG7 39913204
    893245 8vkw:4 (3.44) BS01 rna N/A N/A A0QVY1 39913204
    893246 8vkw:C (3.44) BS01 rna N/A N/A A0QSD4 39913204
    893247 8vkw:D (3.44) BS01 rna N/A N/A A0QSD1 39913204
    893248 8vkw:E (3.44) BS01 rna N/A N/A A0QSD2 39913204
    893249 8vkw:F (3.44) BS01 rna N/A N/A A0QSG1 39913204
    893250 8vkw:F (3.44) BS02 rna N/A N/A A0QSG1 39913204
    893251 8vkw:G (3.44) BS01 rna N/A N/A A0QSG4 39913204
    893252 8vkw:H (3.44) BS01 rna N/A N/A A0R7F6 39913204
    893253 8vkw:J (3.44) BS01 rna N/A N/A A0QS45 39913204
    893254 8vkw:K (3.44) BS01 rna N/A N/A A0QSP8 39913204
    893255 8vkw:L (3.44) BS01 rna N/A N/A A0QSF9 39913204
    893256 8vkw:M (3.44) BS01 rna N/A N/A A0QSG8 39913204
    893257 8vkw:N (3.44) BS01 rna N/A N/A A0QSD8 39913204
    893258 8vkw:O (3.44) BS01 rna N/A N/A A0QSL9 39913204
    893259 8vkw:P (3.44) BS01 rna N/A N/A I7FGD9 39913204
    893260 8vkw:P (3.44) BS02 rna N/A N/A I7FGD9 39913204
    893261 8vkw:Q (3.44) BS01 rna N/A N/A A0QV42 39913204
    893262 8vkw:R (3.44) BS01 rna N/A N/A A0QYU6 39913204
    893263 8vkw:S (3.44) BS01 rna N/A N/A A0R151 39913204
    893264 8vkw:T (3.44) BS01 rna N/A N/A A0QSD6 39913204
    893265 8vkw:U (3.44) BS01 rna N/A N/A A0QSD3 39913204
    893266 8vkw:V (3.44) BS01 rna N/A N/A A0QSG0 39913204
    893267 8vkw:W (3.44) BS01 rna N/A N/A A0R3D2 39913204
    893268 8vkw:X (3.44) BS01 rna N/A N/A A0R150 39913204
    893269 8vkw:X (3.44) BS02 rna N/A N/A A0R150 39913204
    893270 8vkw:Y (3.44) BS01 rna N/A N/A I7FJ52 39913204
    893271 8vkw:Z (3.44) BS01 rna N/A N/A A0QSD9 39913204
    893272 8vkw:b (3.44) BS01 rna N/A N/A A0R3I9 39913204
    893273 8vkw:c (3.44) BS01 rna N/A N/A A0QS39 39913204
    893274 8vkw:d (3.44) BS01 rna N/A N/A A0R7K0 39913204
    893275 8vkw:e (3.44) BS01 rna N/A N/A A0QYU7 39913204
    893276 8vkw:f (3.44) BS01 rna N/A N/A A0QSL4 39913204
    893277 8vkw:g (3.44) BS01 rna N/A N/A A0R215 39913204
    893278 8vkz:A (2.133) BS01 peptide ? N/A P04150 38516584
    893279 8vkz:A (2.133) BS02 A1ACE ? N/A P04150 38516584
    893280 8vkz:B (2.133) BS01 peptide ? N/A P04150 38516584
    893281 8vkz:B (2.133) BS02 A1ACE ? N/A P04150 38516584
    893282 8vl0:A (1.837) BS01 LVC ? N/A N/A 39911918
    893283 8vl0:A (1.837) BS02 HEM ? N/A N/A 39911918
    893284 8vl7:A (1.88) BS01 A1ACJ 3.1.11.2 GO:0003676 ... Q9NSU2 N/A
    893285 8vl7:A (1.88) BS02 MG 3.1.11.2 GO:0003676 ... Q9NSU2 N/A
    893286 8vl7:A (1.88) BS03 MG 3.1.11.2 GO:0003676 ... Q9NSU2 N/A
    893287 8vl7:B (1.88) BS01 A1ACJ 3.1.11.2 GO:0003676 ... Q9NSU2 N/A
    893288 8vl7:B (1.88) BS02 MG 3.1.11.2 GO:0003676 ... Q9NSU2 N/A
    893289 8vl7:B (1.88) BS03 MG 3.1.11.2 GO:0003676 ... Q9NSU2 N/A
    893290 8vl7:C (1.88) BS01 A1ACJ 3.1.11.2 GO:0003676 ... Q9NSU2 N/A
    893291 8vl7:C (1.88) BS02 MG 3.1.11.2 GO:0003676 ... Q9NSU2 N/A
    893292 8vl7:C (1.88) BS03 MG 3.1.11.2 GO:0003676 ... Q9NSU2 N/A
    893293 8vl7:D (1.88) BS01 A1ACJ 3.1.11.2 GO:0003676 ... Q9NSU2 N/A
    893294 8vl7:D (1.88) BS02 MG 3.1.11.2 GO:0003676 ... Q9NSU2 N/A
    893295 8vl7:D (1.88) BS03 MG 3.1.11.2 GO:0003676 ... Q9NSU2 N/A
    893296 8vl7:E (1.88) BS01 A1ACJ 3.1.11.2 GO:0003676 ... Q9NSU2 N/A
    893297 8vl7:E (1.88) BS02 MG 3.1.11.2 GO:0003676 ... Q9NSU2 N/A
    893298 8vl7:E (1.88) BS03 MG 3.1.11.2 GO:0003676 ... Q9NSU2 N/A
    893299 8vl7:F (1.88) BS01 A1ACJ 3.1.11.2 GO:0003676 ... Q9NSU2 N/A
    893300 8vl7:F (1.88) BS02 MG 3.1.11.2 GO:0003676 ... Q9NSU2 N/A
    893301 8vl7:F (1.88) BS03 MG 3.1.11.2 GO:0003676 ... Q9NSU2 N/A
    893302 8vl7:G (1.88) BS01 A1ACJ 3.1.11.2 GO:0003676 ... Q9NSU2 N/A
    893303 8vl7:G (1.88) BS02 MG 3.1.11.2 GO:0003676 ... Q9NSU2 N/A
    893304 8vl7:G (1.88) BS03 MG 3.1.11.2 GO:0003676 ... Q9NSU2 N/A
    893305 8vl7:H (1.88) BS01 A1ACJ 3.1.11.2 GO:0003676 ... Q9NSU2 N/A
    893306 8vl7:H (1.88) BS02 MG 3.1.11.2 GO:0003676 ... Q9NSU2 N/A
    893307 8vl7:H (1.88) BS03 MG 3.1.11.2 GO:0003676 ... Q9NSU2 N/A
    893308 8vl8:A (2.5) BS01 SER ? GO:0006935 ... Q8ZJY4 N/A
    893309 8vl8:B (2.5) BS01 SER ? GO:0006935 ... Q8ZJY4 N/A
    893310 8vl8:C (2.5) BS01 SER ? GO:0006935 ... Q8ZJY4 N/A
    893311 8vl8:D (2.5) BS01 SER ? GO:0006935 ... Q8ZJY4 N/A
    893312 8vl8:E (2.5) BS01 SER ? GO:0006935 ... Q8ZJY4 N/A
    893313 8vl9:A (2.5) BS01 A1ACI ? N/A P40337 N/A
    893314 8vl9:D (2.5) BS01 A1ACI 1.13.11.20 GO:0000097 ... Q16878 N/A
    893315 8vl9:D (2.5) BS02 FE2 1.13.11.20 GO:0000097 ... Q16878 N/A
    893316 8vlb:A (2.9) BS01 3JF ? N/A P40337 N/A
    893317 8vlb:D (2.9) BS01 3JF 1.13.11.20 GO:0000097 ... Q16878 N/A
    893318 8vlb:D (2.9) BS02 FE2 1.13.11.20 GO:0000097 ... Q16878 N/A
    893319 8vlg:A (3.15) BS01 ACO N/A GO:0005764 ... Q68CP4 38918376
    893320 8vlg:A (3.15) BS02 A1ACY N/A GO:0005764 ... Q68CP4 38918376
    893321 8vlg:B (3.15) BS01 ACO N/A GO:0005764 ... Q68CP4 38918376
    893322 8vlg:B (3.15) BS02 A1ACY N/A GO:0005764 ... Q68CP4 38918376
    893323 8vli:A (3.2) BS01 COA N/A GO:0005764 ... Q68CP4 38918376
    893324 8vli:A (3.2) BS02 A1AC0 N/A GO:0005764 ... Q68CP4 38918376
    893325 8vli:B (3.2) BS01 COA N/A GO:0005764 ... Q68CP4 38918376
    893326 8vli:B (3.2) BS02 A1AC0 N/A GO:0005764 ... Q68CP4 38918376
    893327 8vlj:A (1.39) BS01 ZN N/A GO:0003824 ... Q12178 39146405
    893328 8vlj:B (1.39) BS01 ZN N/A GO:0003824 ... Q12178 39146405
    893329 8vlk:A (1.76) BS01 ZN N/A GO:0003824 ... Q12178 39146405
    893330 8vlk:B (1.76) BS01 ZN N/A GO:0003824 ... Q12178 39146405
    893331 8vlk:C (1.76) BS01 ZN N/A GO:0003824 ... Q12178 39146405
    893332 8vlk:D (1.76) BS01 ZN N/A GO:0003824 ... Q12178 39146405
    893333 8vll:A (1.67) BS01 ZN N/A GO:0003824 ... Q12178 39146405
    893334 8vll:B (1.67) BS01 ZN N/A GO:0003824 ... Q12178 39146405
    893335 8vlm:A (2.67) BS01 ZN N/A GO:0003824 ... Q12178 39146405
    893336 8vlm:B (2.67) BS01 ZN N/A GO:0003824 ... Q12178 39146405
    893337 8vlm:C (2.67) BS01 ZN N/A GO:0003824 ... Q12178 39146405
    893338 8vlm:D (2.67) BS01 ZN N/A GO:0003824 ... Q12178 39146405
    893339 8vlq:A (2.07) BS01 ZKE 1.1.1.88 GO:0004420 ... P13702 38327055
    893340 8vlq:A (2.07) BS02 COA 1.1.1.88 GO:0004420 ... P13702 38327055
    893341 8vlq:A (2.07) BS03 A1AFY 1.1.1.88 GO:0004420 ... P13702 38327055
    893342 8vlq:A (2.07) BS04 NAD 1.1.1.88 GO:0004420 ... P13702 38327055
    893343 8vlq:A (2.07) BS05 NAI 1.1.1.88 GO:0004420 ... P13702 38327055
    893344 8vlq:B (2.07) BS01 COA 1.1.1.88 GO:0004420 ... P13702 38327055
    893345 8vlq:B (2.07) BS02 NAD 1.1.1.88 GO:0004420 ... P13702 38327055
    893346 8vlq:B (2.07) BS03 NAI 1.1.1.88 GO:0004420 ... P13702 38327055
    893347 8vlq:B (2.07) BS04 MEV 1.1.1.88 GO:0004420 ... P13702 38327055
    893348 8vlr:A (2.6) BS01 dna N/A N/A P68431 N/A
    893349 8vlr:A (2.6) BS02 dna N/A N/A P68431 N/A
    893350 8vlr:B (2.6) BS01 dna N/A N/A P62805 N/A
    893351 8vlr:B (2.6) BS02 dna N/A N/A P62805 N/A
    893352 8vlr:C (2.6) BS01 dna N/A N/A P04908 N/A
    893353 8vlr:C (2.6) BS02 dna N/A N/A P04908 N/A
    893354 8vlr:D (2.6) BS01 dna N/A N/A Q96A08 N/A
    893355 8vlr:D (2.6) BS02 dna N/A N/A Q96A08 N/A
    893356 8vlr:E (2.6) BS01 dna N/A N/A P68431 N/A
    893357 8vlr:E (2.6) BS02 dna N/A N/A P68431 N/A
    893358 8vlr:F (2.6) BS01 dna N/A N/A P62805 N/A
    893359 8vlr:F (2.6) BS02 dna N/A N/A P62805 N/A
    893360 8vlr:G (2.6) BS01 dna N/A N/A P04908 N/A
    893361 8vlr:G (2.6) BS02 dna N/A N/A P04908 N/A
    893362 8vlr:H (2.6) BS01 dna N/A N/A Q96A08 N/A
    893363 8vlr:H (2.6) BS02 dna N/A N/A Q96A08 N/A
    893364 8vls:A (2.9) BS01 A1AC1 N/A GO:0000502 ... P55072 38833472
    893365 8vls:B (2.9) BS01 A1AC1 N/A GO:0000502 ... P55072 38833472
    893366 8vls:C (2.9) BS01 A1AC1 N/A GO:0000502 ... P55072 38833472
    893367 8vls:D (2.9) BS01 A1AC1 N/A GO:0000502 ... P55072 38833472
    893368 8vls:E (2.9) BS01 A1AC1 N/A GO:0000502 ... P55072 38833472
    893369 8vls:F (2.9) BS01 A1AC1 N/A GO:0000502 ... P55072 38833472
    893370 8vls:G (2.9) BS01 A1AC1 N/A GO:0000502 ... P55072 38833472
    893371 8vls:H (2.9) BS01 A1AC1 N/A GO:0000502 ... P55072 38833472
    893372 8vls:I (2.9) BS01 A1AC1 N/A GO:0000502 ... P55072 38833472
    893373 8vls:J (2.9) BS01 A1AC1 N/A GO:0000502 ... P55072 38833472
    893374 8vls:K (2.9) BS01 A1AC1 N/A GO:0000502 ... P55072 38833472
    893375 8vls:L (2.9) BS01 A1AC1 N/A GO:0000502 ... P55072 38833472
    893376 8vlt:L (1.84) BS01 MAN N/A N/A N/A 39292703
    893377 8vlu:A (3.12) BS01 COA N/A GO:0005764 ... Q68CP4 38918376
    893378 8vlu:B (3.12) BS01 COA N/A GO:0005764 ... Q68CP4 38918376
    893379 8vlx:A (2.6) BS01 A1ACS ? GO:0000132 ... P42858 N/A
    893380 8vlx:B (2.6) BS01 A1ACS ? GO:0005515 ... P23610 N/A
    893381 8vm2:A (1.74) BS01 GTP 3.6.5.2 GO:0000139 ... P01111 38640594
    893382 8vm2:A (1.74) BS02 MG 3.6.5.2 GO:0000139 ... P01111 38640594
    893383 8vm2:A (1.74) BS03 GTP 3.6.5.2 GO:0000139 ... P01111 38640594
    893384 8vm2:A (1.74) BS04 GTP 3.6.5.2 GO:0000139 ... P01111 38640594
    893385 8vm2:B (1.74) BS01 GTP 3.6.5.2 GO:0000139 ... P01111 38640594
    893386 8vm2:B (1.74) BS02 GTP 3.6.5.2 GO:0000139 ... P01111 38640594
    893387 8vm2:B (1.74) BS03 MG 3.6.5.2 GO:0000139 ... P01111 38640594
    893388 8vm2:B (1.74) BS04 GTP 3.6.5.2 GO:0000139 ... P01111 38640594
    893389 8vm2:C (1.74) BS01 GTP 3.6.5.2 GO:0000139 ... P01111 38640594
    893390 8vm2:C (1.74) BS02 MG 3.6.5.2 GO:0000139 ... P01111 38640594
    893391 8vm8:H (1.54) BS01 rna N/A N/A N/A 39036953
    893392 8vm8:L (1.54) BS01 rna N/A N/A N/A 39036953
    893393 8vm9:A (2.2) BS01 rna N/A N/A N/A 39036953
    893394 8vm9:B (2.2) BS01 rna N/A N/A N/A 39036953
    893395 8vm9:B (2.2) BS02 rna N/A N/A N/A 39036953
    893396 8vm9:H (2.2) BS01 rna N/A N/A N/A 39036953
    893397 8vm9:L (2.2) BS01 rna N/A N/A N/A 39036953
    893398 8vm9:L (2.2) BS02 rna N/A N/A N/A 39036953
    893399 8vma:A (2.54) BS01 rna N/A N/A N/A 39036953
    893400 8vma:B (2.54) BS01 rna N/A N/A N/A 39036953

    Reference:
  • Chengxin Zhang, Xi Zhang, Lydia Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).