SEQ2FUN

BioLiP
Download all results in tab-seperated text for 942758 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
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  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
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    # PDB
    (Resolution Å)
    Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    893401 8vma:B (2.54) BS02 rna N/A N/A N/A 39036953
    893402 8vma:H (2.54) BS01 rna N/A N/A N/A 39036953
    893403 8vma:L (2.54) BS01 rna N/A N/A N/A 39036953
    893404 8vma:L (2.54) BS02 rna N/A N/A N/A 39036953
    893405 8vmb:H (2.97) BS01 rna N/A N/A N/A 39036953
    893406 8vmb:L (2.97) BS01 rna N/A N/A N/A 39036953
    893407 8vme:A (2.3) BS01 peptide N/A GO:0004672 ... Q9WV60 39226374
    893408 8vme:A (2.3) BS02 peptide N/A GO:0004672 ... Q9WV60 39226374
    893409 8vme:A (2.3) BS03 ADP N/A GO:0004672 ... Q9WV60 39226374
    893410 8vme:A (2.3) BS04 MG N/A GO:0004672 ... Q9WV60 39226374
    893411 8vmf:A (2.5) BS01 peptide N/A GO:0004672 ... Q9WV60 39226374
    893412 8vmf:A (2.5) BS02 peptide N/A GO:0004672 ... Q9WV60 39226374
    893413 8vmf:A (2.5) BS03 MG N/A GO:0004672 ... Q9WV60 39226374
    893414 8vmf:A (2.5) BS04 AF3 N/A GO:0004672 ... Q9WV60 39226374
    893415 8vmf:A (2.5) BS05 ADP N/A GO:0004672 ... Q9WV60 39226374
    893416 8vmg:A (2.45) BS01 ADP N/A GO:0004672 ... Q9WV60 39226374
    893417 8vmg:A (2.45) BS02 MG N/A GO:0004672 ... Q9WV60 39226374
    893418 8vmh:A (2.46) BS01 A1ACT N/A N/A P47811 N/A
    893419 8vmi:A (3.1) BS01 peptide N/A N/A O75530 39774834
    893420 8vmi:C (3.1) BS01 peptide N/A N/A Q15910 39774834
    893421 8vmi:C (3.1) BS02 ZN N/A N/A Q15910 39774834
    893422 8vmi:C (3.1) BS03 ZN N/A N/A Q15910 39774834
    893423 8vmi:C (3.1) BS04 ZN N/A N/A Q15910 39774834
    893424 8vmi:C (3.1) BS05 ZN N/A N/A Q15910 39774834
    893425 8vmi:C (3.1) BS06 ZN N/A N/A Q15910 39774834
    893426 8vmi:C (3.1) BS07 ZN N/A N/A Q15910 39774834
    893427 8vmi:P (3.1) BS01 peptide N/A N/A Q6ZN18 39774834
    893428 8vmi:T (3.1) BS01 peptide N/A N/A Q15022 39774834
    893429 8vmj:I (3.1) BS01 dna N/A N/A Q71DI3 39774834
    893430 8vmj:I (3.1) BS02 dna N/A N/A Q71DI3 39774834
    893431 8vmj:J (3.1) BS01 dna N/A N/A P62805 39774834
    893432 8vmj:J (3.1) BS02 dna N/A N/A P62805 39774834
    893433 8vmj:K (3.1) BS01 dna N/A N/A Q6AZJ8 39774834
    893434 8vmj:K (3.1) BS02 dna N/A N/A Q6AZJ8 39774834
    893435 8vmj:M (3.1) BS01 dna N/A N/A A0A8J1LZU9 39774834
    893436 8vmj:M (3.1) BS02 dna N/A N/A A0A8J1LZU9 39774834
    893437 8vmj:O (3.1) BS01 dna N/A N/A Q71DI3 39774834
    893438 8vmj:O (3.1) BS02 dna N/A N/A Q71DI3 39774834
    893439 8vmj:Q (3.1) BS01 dna N/A N/A P62805 39774834
    893440 8vmj:Q (3.1) BS02 dna N/A N/A P62805 39774834
    893441 8vmj:R (3.1) BS01 dna N/A N/A Q6AZJ8 39774834
    893442 8vmj:S (3.1) BS01 dna N/A N/A A0A8J1LZU9 39774834
    893443 8vmj:S (3.1) BS02 dna N/A N/A A0A8J1LZU9 39774834
    893444 8vml:C (3.5) BS01 peptide N/A N/A Q15910 39774834
    893445 8vmm:A (2.4) BS01 A1ACP N/A N/A P47811 N/A
    893446 8vmn:I (3.5) BS01 dna N/A N/A Q71DI3 39774834
    893447 8vmn:I (3.5) BS02 dna N/A N/A Q71DI3 39774834
    893448 8vmn:J (3.5) BS01 dna N/A N/A P62805 39774834
    893449 8vmn:J (3.5) BS02 dna N/A N/A P62805 39774834
    893450 8vmn:K (3.5) BS01 dna N/A N/A Q6AZJ8 39774834
    893451 8vmn:K (3.5) BS02 dna N/A N/A Q6AZJ8 39774834
    893452 8vmn:M (3.5) BS01 dna N/A N/A A0A8J1LZU9 39774834
    893453 8vmn:M (3.5) BS02 dna N/A N/A A0A8J1LZU9 39774834
    893454 8vmn:O (3.5) BS01 dna N/A N/A Q71DI3 39774834
    893455 8vmn:O (3.5) BS02 dna N/A N/A Q71DI3 39774834
    893456 8vmn:Q (3.5) BS01 dna N/A N/A P62805 39774834
    893457 8vmn:Q (3.5) BS02 dna N/A N/A P62805 39774834
    893458 8vmn:R (3.5) BS01 dna N/A N/A Q6AZJ8 39774834
    893459 8vmn:R (3.5) BS02 dna N/A N/A Q6AZJ8 39774834
    893460 8vmn:S (3.5) BS01 dna N/A N/A A0A8J1LZU9 39774834
    893461 8vmn:S (3.5) BS02 dna N/A N/A A0A8J1LZU9 39774834
    893462 8vmo:A (1.68) BS01 dna N/A GO:0004519 ... Q94702 39141555
    893463 8vmo:A (1.68) BS02 dna N/A GO:0004519 ... Q94702 39141555
    893464 8vmo:A (1.68) BS03 ZN N/A GO:0004519 ... Q94702 39141555
    893465 8vmo:A (1.68) BS04 ZN N/A GO:0004519 ... Q94702 39141555
    893466 8vmo:B (1.68) BS01 dna N/A GO:0004519 ... Q94702 39141555
    893467 8vmo:B (1.68) BS02 dna N/A GO:0004519 ... Q94702 39141555
    893468 8vmo:B (1.68) BS03 ZN N/A GO:0004519 ... Q94702 39141555
    893469 8vmo:B (1.68) BS04 ZN N/A GO:0004519 ... Q94702 39141555
    893470 8vmp:A (1.45) BS01 dna N/A GO:0004519 ... Q94702 39141555
    893471 8vmp:A (1.45) BS02 dna N/A GO:0004519 ... Q94702 39141555
    893472 8vmp:A (1.45) BS03 ZN N/A GO:0004519 ... Q94702 39141555
    893473 8vmp:A (1.45) BS04 ZN N/A GO:0004519 ... Q94702 39141555
    893474 8vmp:B (1.45) BS01 dna N/A GO:0004519 ... Q94702 39141555
    893475 8vmp:B (1.45) BS02 dna N/A GO:0004519 ... Q94702 39141555
    893476 8vmp:B (1.45) BS03 ZN N/A GO:0004519 ... Q94702 39141555
    893477 8vmp:B (1.45) BS04 ZN N/A GO:0004519 ... Q94702 39141555
    893478 8vmq:A (1.48) BS01 dna N/A GO:0004519 ... Q94702 39141555
    893479 8vmq:A (1.48) BS02 dna N/A GO:0004519 ... Q94702 39141555
    893480 8vmq:A (1.48) BS03 ZN N/A GO:0004519 ... Q94702 39141555
    893481 8vmq:A (1.48) BS04 ZN N/A GO:0004519 ... Q94702 39141555
    893482 8vmq:B (1.48) BS01 dna N/A GO:0004519 ... Q94702 39141555
    893483 8vmq:B (1.48) BS02 dna N/A GO:0004519 ... Q94702 39141555
    893484 8vmq:B (1.48) BS03 ZN N/A GO:0004519 ... Q94702 39141555
    893485 8vmq:B (1.48) BS04 ZN N/A GO:0004519 ... Q94702 39141555
    893486 8vmr:A (1.5) BS01 dna N/A GO:0004519 ... Q94702 39141555
    893487 8vmr:A (1.5) BS02 dna N/A GO:0004519 ... Q94702 39141555
    893488 8vmr:A (1.5) BS03 ZN N/A GO:0004519 ... Q94702 39141555
    893489 8vmr:A (1.5) BS04 ZN N/A GO:0004519 ... Q94702 39141555
    893490 8vmr:B (1.5) BS01 dna N/A GO:0004519 ... Q94702 39141555
    893491 8vmr:B (1.5) BS02 dna N/A GO:0004519 ... Q94702 39141555
    893492 8vmr:B (1.5) BS03 ZN N/A GO:0004519 ... Q94702 39141555
    893493 8vmr:B (1.5) BS04 ZN N/A GO:0004519 ... Q94702 39141555
    893494 8vms:A (1.42) BS01 dna N/A GO:0004519 ... Q94702 39141555
    893495 8vms:A (1.42) BS02 dna N/A GO:0004519 ... Q94702 39141555
    893496 8vms:A (1.42) BS03 ZN N/A GO:0004519 ... Q94702 39141555
    893497 8vms:A (1.42) BS04 ZN N/A GO:0004519 ... Q94702 39141555
    893498 8vms:B (1.42) BS01 dna N/A GO:0004519 ... Q94702 39141555
    893499 8vms:B (1.42) BS02 dna N/A GO:0004519 ... Q94702 39141555
    893500 8vms:B (1.42) BS03 ZN N/A GO:0004519 ... Q94702 39141555
    893501 8vms:B (1.42) BS04 ZN N/A GO:0004519 ... Q94702 39141555
    893502 8vmt:A (1.48) BS01 dna N/A GO:0004519 ... Q94702 39141555
    893503 8vmt:A (1.48) BS02 dna N/A GO:0004519 ... Q94702 39141555
    893504 8vmt:A (1.48) BS03 ZN N/A GO:0004519 ... Q94702 39141555
    893505 8vmt:A (1.48) BS04 ZN N/A GO:0004519 ... Q94702 39141555
    893506 8vmt:B (1.48) BS01 dna N/A GO:0004519 ... Q94702 39141555
    893507 8vmt:B (1.48) BS02 dna N/A GO:0004519 ... Q94702 39141555
    893508 8vmt:B (1.48) BS03 ZN N/A GO:0004519 ... Q94702 39141555
    893509 8vmt:B (1.48) BS04 ZN N/A GO:0004519 ... Q94702 39141555
    893510 8vmu:A (1.52) BS01 dna N/A GO:0004519 ... Q94702 39141555
    893511 8vmu:A (1.52) BS02 dna N/A GO:0004519 ... Q94702 39141555
    893512 8vmu:A (1.52) BS03 ZN N/A GO:0004519 ... Q94702 39141555
    893513 8vmu:A (1.52) BS04 ZN N/A GO:0004519 ... Q94702 39141555
    893514 8vmu:B (1.52) BS01 dna N/A GO:0004519 ... Q94702 39141555
    893515 8vmu:B (1.52) BS02 dna N/A GO:0004519 ... Q94702 39141555
    893516 8vmu:B (1.52) BS03 ZN N/A GO:0004519 ... Q94702 39141555
    893517 8vmu:B (1.52) BS04 ZN N/A GO:0004519 ... Q94702 39141555
    893518 8vmv:A (1.59) BS01 dna N/A GO:0004519 ... Q94702 39141555
    893519 8vmv:A (1.59) BS02 dna N/A GO:0004519 ... Q94702 39141555
    893520 8vmv:A (1.59) BS03 dna N/A GO:0004519 ... Q94702 39141555
    893521 8vmv:A (1.59) BS04 ZN N/A GO:0004519 ... Q94702 39141555
    893522 8vmv:A (1.59) BS05 ZN N/A GO:0004519 ... Q94702 39141555
    893523 8vmv:B (1.59) BS01 dna N/A GO:0004519 ... Q94702 39141555
    893524 8vmv:B (1.59) BS02 dna N/A GO:0004519 ... Q94702 39141555
    893525 8vmv:B (1.59) BS03 dna N/A GO:0004519 ... Q94702 39141555
    893526 8vmv:B (1.59) BS04 ZN N/A GO:0004519 ... Q94702 39141555
    893527 8vmv:B (1.59) BS05 ZN N/A GO:0004519 ... Q94702 39141555
    893528 8vmw:A (1.6) BS01 dna N/A GO:0004519 ... Q94702 39141555
    893529 8vmw:A (1.6) BS02 dna N/A GO:0004519 ... Q94702 39141555
    893530 8vmw:A (1.6) BS03 ZN N/A GO:0004519 ... Q94702 39141555
    893531 8vmw:A (1.6) BS04 ZN N/A GO:0004519 ... Q94702 39141555
    893532 8vmw:B (1.6) BS01 dna N/A GO:0004519 ... Q94702 39141555
    893533 8vmw:B (1.6) BS02 dna N/A GO:0004519 ... Q94702 39141555
    893534 8vmw:B (1.6) BS03 ZN N/A GO:0004519 ... Q94702 39141555
    893535 8vmw:B (1.6) BS04 ZN N/A GO:0004519 ... Q94702 39141555
    893536 8vmx:A (1.45) BS01 dna N/A GO:0004519 ... Q94702 39141555
    893537 8vmx:A (1.45) BS02 dna N/A GO:0004519 ... Q94702 39141555
    893538 8vmx:A (1.45) BS03 ZN N/A GO:0004519 ... Q94702 39141555
    893539 8vmx:A (1.45) BS04 ZN N/A GO:0004519 ... Q94702 39141555
    893540 8vmx:B (1.45) BS01 dna N/A GO:0004519 ... Q94702 39141555
    893541 8vmx:B (1.45) BS02 dna N/A GO:0004519 ... Q94702 39141555
    893542 8vmx:B (1.45) BS03 ZN N/A GO:0004519 ... Q94702 39141555
    893543 8vmx:B (1.45) BS04 ZN N/A GO:0004519 ... Q94702 39141555
    893544 8vmy:A (1.53) BS01 dna N/A GO:0004519 ... Q94702 39141555
    893545 8vmy:A (1.53) BS02 dna N/A GO:0004519 ... Q94702 39141555
    893546 8vmy:A (1.53) BS03 ZN N/A GO:0004519 ... Q94702 39141555
    893547 8vmy:A (1.53) BS04 ZN N/A GO:0004519 ... Q94702 39141555
    893548 8vmy:B (1.53) BS01 dna N/A GO:0004519 ... Q94702 39141555
    893549 8vmy:B (1.53) BS02 dna N/A GO:0004519 ... Q94702 39141555
    893550 8vmy:B (1.53) BS03 ZN N/A GO:0004519 ... Q94702 39141555
    893551 8vmy:B (1.53) BS04 ZN N/A GO:0004519 ... Q94702 39141555
    893552 8vmz:A (1.57) BS01 dna N/A GO:0004519 ... Q94702 39141555
    893553 8vmz:A (1.57) BS02 dna N/A GO:0004519 ... Q94702 39141555
    893554 8vmz:A (1.57) BS03 ZN N/A GO:0004519 ... Q94702 39141555
    893555 8vmz:A (1.57) BS04 ZN N/A GO:0004519 ... Q94702 39141555
    893556 8vmz:B (1.57) BS01 dna N/A GO:0004519 ... Q94702 39141555
    893557 8vmz:B (1.57) BS02 dna N/A GO:0004519 ... Q94702 39141555
    893558 8vmz:B (1.57) BS03 ZN N/A GO:0004519 ... Q94702 39141555
    893559 8vmz:B (1.57) BS04 ZN N/A GO:0004519 ... Q94702 39141555
    893560 8vn0:A (1.6) BS01 dna N/A GO:0004519 ... Q94702 39141555
    893561 8vn0:A (1.6) BS02 dna N/A GO:0004519 ... Q94702 39141555
    893562 8vn0:A (1.6) BS03 ZN N/A GO:0004519 ... Q94702 39141555
    893563 8vn0:A (1.6) BS04 ZN N/A GO:0004519 ... Q94702 39141555
    893564 8vn0:B (1.6) BS01 dna N/A GO:0004519 ... Q94702 39141555
    893565 8vn0:B (1.6) BS02 dna N/A GO:0004519 ... Q94702 39141555
    893566 8vn0:B (1.6) BS03 ZN N/A GO:0004519 ... Q94702 39141555
    893567 8vn0:B (1.6) BS04 ZN N/A GO:0004519 ... Q94702 39141555
    893568 8vn1:A (1.79) BS01 dna N/A GO:0004519 ... Q94702 39141555
    893569 8vn1:A (1.79) BS02 dna N/A GO:0004519 ... Q94702 39141555
    893570 8vn1:A (1.79) BS03 ZN N/A GO:0004519 ... Q94702 39141555
    893571 8vn1:A (1.79) BS04 ZN N/A GO:0004519 ... Q94702 39141555
    893572 8vn1:B (1.79) BS01 dna N/A GO:0004519 ... Q94702 39141555
    893573 8vn1:B (1.79) BS02 dna N/A GO:0004519 ... Q94702 39141555
    893574 8vn1:B (1.79) BS03 ZN N/A GO:0004519 ... Q94702 39141555
    893575 8vn1:B (1.79) BS04 ZN N/A GO:0004519 ... Q94702 39141555
    893576 8vn2:A (1.63) BS01 dna N/A GO:0004519 ... Q94702 39141555
    893577 8vn2:A (1.63) BS02 dna N/A GO:0004519 ... Q94702 39141555
    893578 8vn2:A (1.63) BS03 ZN N/A GO:0004519 ... Q94702 39141555
    893579 8vn2:A (1.63) BS04 ZN N/A GO:0004519 ... Q94702 39141555
    893580 8vn2:B (1.63) BS01 dna N/A GO:0004519 ... Q94702 39141555
    893581 8vn2:B (1.63) BS02 dna N/A GO:0004519 ... Q94702 39141555
    893582 8vn2:B (1.63) BS03 ZN N/A GO:0004519 ... Q94702 39141555
    893583 8vn2:B (1.63) BS04 ZN N/A GO:0004519 ... Q94702 39141555
    893584 8vn3:A (1.63) BS01 dna N/A GO:0004519 ... Q94702 39141555
    893585 8vn3:A (1.63) BS02 dna N/A GO:0004519 ... Q94702 39141555
    893586 8vn3:A (1.63) BS03 dna N/A GO:0004519 ... Q94702 39141555
    893587 8vn3:A (1.63) BS04 ZN N/A GO:0004519 ... Q94702 39141555
    893588 8vn3:A (1.63) BS05 ZN N/A GO:0004519 ... Q94702 39141555
    893589 8vn3:B (1.63) BS01 dna N/A GO:0004519 ... Q94702 39141555
    893590 8vn3:B (1.63) BS02 dna N/A GO:0004519 ... Q94702 39141555
    893591 8vn3:B (1.63) BS03 dna N/A GO:0004519 ... Q94702 39141555
    893592 8vn3:B (1.63) BS04 ZN N/A GO:0004519 ... Q94702 39141555
    893593 8vn3:B (1.63) BS05 ZN N/A GO:0004519 ... Q94702 39141555
    893594 8vn4:A (1.75) BS01 dna N/A GO:0004519 ... Q94702 39141555
    893595 8vn4:A (1.75) BS02 dna N/A GO:0004519 ... Q94702 39141555
    893596 8vn4:A (1.75) BS03 dna N/A GO:0004519 ... Q94702 39141555
    893597 8vn4:A (1.75) BS04 ZN N/A GO:0004519 ... Q94702 39141555
    893598 8vn4:A (1.75) BS05 ZN N/A GO:0004519 ... Q94702 39141555
    893599 8vn4:B (1.75) BS01 dna N/A GO:0004519 ... Q94702 39141555
    893600 8vn4:B (1.75) BS02 dna N/A GO:0004519 ... Q94702 39141555

    Reference:
  • Chengxin Zhang, Xi Zhang, Lydia Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).