SEQ2FUN

BioLiP
Download all results in tab-seperated text for 942758 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
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  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.
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    # PDB
    (Resolution Å)
    Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    893801 8vnt:A (1.62) BS05 ZN N/A GO:0004519 ... Q94702 39141555
    893802 8vnt:B (1.62) BS01 dna N/A GO:0004519 ... Q94702 39141555
    893803 8vnt:B (1.62) BS02 dna N/A GO:0004519 ... Q94702 39141555
    893804 8vnt:B (1.62) BS03 dna N/A GO:0004519 ... Q94702 39141555
    893805 8vnt:B (1.62) BS04 ZN N/A GO:0004519 ... Q94702 39141555
    893806 8vnt:B (1.62) BS05 ZN N/A GO:0004519 ... Q94702 39141555
    893807 8vnu:A (2.2) BS01 dna N/A GO:0004519 ... Q94702 39141555
    893808 8vnu:A (2.2) BS02 dna N/A GO:0004519 ... Q94702 39141555
    893809 8vnu:A (2.2) BS03 ZN N/A GO:0004519 ... Q94702 39141555
    893810 8vnu:A (2.2) BS04 ZN N/A GO:0004519 ... Q94702 39141555
    893811 8vnu:B (2.2) BS01 dna N/A GO:0004519 ... Q94702 39141555
    893812 8vnu:B (2.2) BS02 dna N/A GO:0004519 ... Q94702 39141555
    893813 8vnu:B (2.2) BS03 ZN N/A GO:0004519 ... Q94702 39141555
    893814 8vnu:B (2.2) BS04 ZN N/A GO:0004519 ... Q94702 39141555
    893815 8vnv:C (3.1) BS01 peptide N/A N/A Q15910 39774834
    893816 8vnv:C (3.1) BS02 dna N/A N/A Q15910 39774834
    893817 8vnv:C (3.1) BS03 SAH N/A N/A Q15910 39774834
    893818 8vnx:A (2.0) BS01 WHQ N/A N/A P53779 N/A
    893819 8vnz:C (3.5) BS01 SAH N/A N/A Q15910 39774834
    893820 8vo0:I (3.3) BS01 dna N/A N/A Q71DI3 39774834
    893821 8vo0:J (3.3) BS01 dna N/A N/A P62805 39774834
    893822 8vo0:J (3.3) BS02 dna N/A N/A P62805 39774834
    893823 8vo0:K (3.3) BS01 dna N/A N/A Q6AZJ8 39774834
    893824 8vo0:K (3.3) BS02 dna N/A N/A Q6AZJ8 39774834
    893825 8vo0:M (3.3) BS01 dna N/A N/A P02281 39774834
    893826 8vo0:M (3.3) BS02 dna N/A N/A P02281 39774834
    893827 8vo0:O (3.3) BS01 dna N/A N/A Q71DI3 39774834
    893828 8vo0:O (3.3) BS02 dna N/A N/A Q71DI3 39774834
    893829 8vo0:Q (3.3) BS01 dna N/A N/A P62805 39774834
    893830 8vo0:Q (3.3) BS02 dna N/A N/A P62805 39774834
    893831 8vo0:R (3.3) BS01 dna N/A N/A Q6AZJ8 39774834
    893832 8vo0:R (3.3) BS02 dna N/A N/A Q6AZJ8 39774834
    893833 8vo0:S (3.3) BS01 dna N/A N/A P02281 39774834
    893834 8vo0:S (3.3) BS02 dna N/A N/A P02281 39774834
    893835 8vo3:A (1.5) BS01 EV1 N/A N/A A0A9Y2YA81 39207895
    893836 8vo4:A (2.07) BS01 WHE N/A N/A P53779 N/A
    893837 8vo5:B (3.0) BS01 ADP N/A N/A P68139 39833469
    893838 8vo5:C (3.0) BS01 ADP N/A N/A P68139 39833469
    893839 8vo5:D (3.0) BS01 ADP N/A N/A P68139 39833469
    893840 8vo6:E (3.1) BS01 ADP N/A N/A P68139 39833469
    893841 8vo6:F (3.1) BS01 ADP N/A N/A P68139 39833469
    893842 8vo6:G (3.1) BS01 ADP N/A N/A P68139 39833469
    893843 8vo7:B (3.1) BS01 ADP N/A N/A P68139 39833469
    893844 8vo7:C (3.1) BS01 ADP N/A N/A P68139 39833469
    893845 8vo7:D (3.1) BS01 ADP N/A N/A P68139 39833469
    893846 8vo7:E (3.1) BS01 ADP N/A N/A P68139 39833469
    893847 8vo7:F (3.1) BS01 ADP N/A N/A P68139 39833469
    893848 8vo7:G (3.1) BS01 ADP N/A N/A P68139 39833469
    893849 8vo8:B (3.9) BS01 ADP N/A N/A P68139 39833469
    893850 8vo8:C (3.9) BS01 ADP N/A N/A P68139 39833469
    893851 8vo8:D (3.9) BS01 ADP N/A N/A P68139 39833469
    893852 8vo8:E (3.9) BS01 ADP N/A N/A P68139 39833469
    893853 8vo8:F (3.9) BS01 ADP N/A N/A P68139 39833469
    893854 8vo8:G (3.9) BS01 ADP N/A N/A P68139 39833469
    893855 8vo9:B (3.4) BS01 ADP N/A N/A P68139 39833469
    893856 8vo9:C (3.4) BS01 ADP N/A N/A P68139 39833469
    893857 8vo9:D (3.4) BS01 ADP N/A N/A P68139 39833469
    893858 8vo9:E (3.4) BS01 ADP N/A N/A P68139 39833469
    893859 8vo9:F (3.4) BS01 ADP N/A N/A P68139 39833469
    893860 8vo9:G (3.4) BS01 ADP N/A N/A P68139 39833469
    893861 8voa:B (4.0) BS01 ADP N/A N/A P68139 39833469
    893862 8voa:C (4.0) BS01 ADP N/A N/A P68139 39833469
    893863 8voa:D (4.0) BS01 ADP N/A N/A P68139 39833469
    893864 8voa:E (4.0) BS01 ADP N/A N/A P68139 39833469
    893865 8voa:F (4.0) BS01 ADP N/A N/A P68139 39833469
    893866 8voa:G (4.0) BS01 ADP N/A N/A P68139 39833469
    893867 8vob:I (3.1) BS01 dna N/A N/A Q71DI3 39774834
    893868 8vob:I (3.1) BS02 dna N/A N/A Q71DI3 39774834
    893869 8vob:J (3.1) BS01 dna N/A N/A P62805 39774834
    893870 8vob:J (3.1) BS02 dna N/A N/A P62805 39774834
    893871 8vob:K (3.1) BS01 dna N/A N/A P0C0S8 39774834
    893872 8vob:K (3.1) BS02 dna N/A N/A P0C0S8 39774834
    893873 8vob:M (3.1) BS01 dna N/A N/A P02281 39774834
    893874 8vob:M (3.1) BS02 dna N/A N/A P02281 39774834
    893875 8vob:O (3.1) BS01 dna N/A N/A Q71DI3 39774834
    893876 8vob:O (3.1) BS02 dna N/A N/A Q71DI3 39774834
    893877 8vob:Q (3.1) BS01 dna N/A N/A P62805 39774834
    893878 8vob:Q (3.1) BS02 dna N/A N/A P62805 39774834
    893879 8vob:R (3.1) BS01 dna N/A N/A P0C0S8 39774834
    893880 8vob:R (3.1) BS02 dna N/A N/A P0C0S8 39774834
    893881 8vob:S (3.1) BS01 dna N/A N/A P02281 39774834
    893882 8vob:S (3.1) BS02 dna N/A N/A P02281 39774834
    893883 8vod:A (2.12) BS01 peptide N/A N/A Q9QZ88 N/A
    893884 8vof:A (3.0) BS01 A1ADE N/A GO:0016301 ... Q9UBF8 39379634
    893885 8vof:B (3.0) BS01 GDP N/A GO:0000139 ... P62491 39379634
    893886 8voi:A (-1.00) BS01 MG ? N/A P11215 N/A
    893887 8voj:B (3.77) BS01 IHP N/A N/A Q9NVX7 N/A
    893888 8voj:B (3.77) BS02 A1ACV N/A N/A Q9NVX7 N/A
    893889 8voj:C (3.77) BS01 ZN N/A GO:0000118 ... Q13547 N/A
    893890 8voj:C (3.77) BS02 IHP N/A GO:0000118 ... Q13547 N/A
    893891 8voj:C (3.77) BS03 A1ACV N/A GO:0000118 ... Q13547 N/A
    893892 8voj:D (3.77) BS01 IHP N/A N/A Q9UKL0 N/A
    893893 8vov:A (3.6) BS01 ADP N/A GO:0000502 ... P55072 38833472
    893894 8vov:A (3.6) BS02 A1AC1 N/A GO:0000502 ... P55072 38833472
    893895 8vov:B (3.6) BS01 ADP N/A GO:0000502 ... P55072 38833472
    893896 8vov:B (3.6) BS02 A1AC1 N/A GO:0000502 ... P55072 38833472
    893897 8vov:C (3.6) BS01 ADP N/A GO:0000502 ... P55072 38833472
    893898 8vov:C (3.6) BS02 A1AC1 N/A GO:0000502 ... P55072 38833472
    893899 8vov:D (3.6) BS01 ADP N/A GO:0000502 ... P55072 38833472
    893900 8vov:D (3.6) BS02 A1AC1 N/A GO:0000502 ... P55072 38833472
    893901 8vov:E (3.6) BS01 ADP N/A GO:0000502 ... P55072 38833472
    893902 8vov:E (3.6) BS02 A1AC1 N/A GO:0000502 ... P55072 38833472
    893903 8vov:F (3.6) BS01 ADP N/A GO:0000502 ... P55072 38833472
    893904 8vov:F (3.6) BS02 A1AC1 N/A GO:0000502 ... P55072 38833472
    893905 8vow:A (3.44) BS01 ATP N/A N/A A3DCU1 39428489
    893906 8vow:A (3.44) BS02 ADP N/A N/A A3DCU1 39428489
    893907 8vow:B (3.44) BS01 ATP N/A N/A A3DCU1 39428489
    893908 8vow:B (3.44) BS02 ADP N/A N/A A3DCU1 39428489
    893909 8vox:A (3.07) BS01 ADP N/A N/A A3DCU1 39428489
    893910 8vox:A (3.07) BS02 MG N/A N/A A3DCU1 39428489
    893911 8vox:A (3.07) BS03 ADP N/A N/A A3DCU1 39428489
    893912 8vox:B (3.07) BS01 ADP N/A N/A A3DCU1 39428489
    893913 8vox:B (3.07) BS02 ADP N/A N/A A3DCU1 39428489
    893914 8vox:B (3.07) BS03 MG N/A N/A A3DCU1 39428489
    893915 8voz:A (3.03) BS01 ADP N/A N/A A3DCU1 39428489
    893916 8voz:A (3.03) BS02 MG N/A N/A A3DCU1 39428489
    893917 8voz:A (3.03) BS03 A1ACX N/A N/A A3DCU1 39428489
    893918 8voz:A (3.03) BS04 ADP N/A N/A A3DCU1 39428489
    893919 8voz:B (3.03) BS01 ADP N/A N/A A3DCU1 39428489
    893920 8voz:B (3.03) BS02 ADP N/A N/A A3DCU1 39428489
    893921 8voz:B (3.03) BS03 MG N/A N/A A3DCU1 39428489
    893922 8vp1:A (3.48) BS01 ATP N/A N/A A3DCU1 39428489
    893923 8vp1:A (3.48) BS02 ATP N/A N/A A3DCU1 39428489
    893924 8vp1:B (3.48) BS01 ATP N/A N/A A3DCU1 39428489
    893925 8vp1:B (3.48) BS02 ATP N/A N/A A3DCU1 39428489
    893926 8vp3:A (2.96) BS01 peptide N/A GO:0005515 ... A3DCU1 39428489
    893927 8vp3:A (2.96) BS02 ADP N/A GO:0005515 ... A3DCU1 39428489
    893928 8vp3:A (2.96) BS03 MG N/A GO:0005515 ... A3DCU1 39428489
    893929 8vp3:A (2.96) BS04 A1ACX N/A GO:0005515 ... A3DCU1 39428489
    893930 8vp3:B (2.96) BS01 peptide N/A GO:0005515 ... A3DCU1 39428489
    893931 8vp3:B (2.96) BS02 ADP N/A GO:0005515 ... A3DCU1 39428489
    893932 8vp5:A (3.18) BS01 peptide N/A GO:0005515 ... A3DCU1 39428489
    893933 8vp5:A (3.18) BS02 ADP N/A GO:0005515 ... A3DCU1 39428489
    893934 8vp5:A (3.18) BS03 A1ACX N/A GO:0005515 ... A3DCU1 39428489
    893935 8vp5:A (3.18) BS04 A1ACX N/A GO:0005515 ... A3DCU1 39428489
    893936 8vp5:B (3.18) BS01 peptide N/A GO:0005515 ... A3DCU1 39428489
    893937 8vp5:B (3.18) BS02 A1ACX N/A GO:0005515 ... A3DCU1 39428489
    893938 8vp5:B (3.18) BS03 ADP N/A GO:0005515 ... A3DCU1 39428489
    893939 8vp5:B (3.18) BS04 A1ACX N/A GO:0005515 ... A3DCU1 39428489
    893940 8vp8:A (3.37) BS01 ATP N/A GO:0005515 ... A3DCU1 39428489
    893941 8vp8:A (3.37) BS02 ATP N/A GO:0005515 ... A3DCU1 39428489
    893942 8vp8:B (3.37) BS01 ATP N/A GO:0005515 ... A3DCU1 39428489
    893943 8vp8:B (3.37) BS02 ATP N/A GO:0005515 ... A3DCU1 39428489
    893944 8vp9:A (3.18) BS01 peptide N/A GO:0005515 ... A3DCU1 39428489
    893945 8vp9:A (3.18) BS02 ADP N/A GO:0005515 ... A3DCU1 39428489
    893946 8vp9:A (3.18) BS03 A1ACX N/A GO:0005515 ... A3DCU1 39428489
    893947 8vp9:A (3.18) BS04 A1ACX N/A GO:0005515 ... A3DCU1 39428489
    893948 8vp9:B (3.18) BS01 peptide N/A GO:0005515 ... A3DCU1 39428489
    893949 8vp9:B (3.18) BS02 ADP N/A GO:0005515 ... A3DCU1 39428489
    893950 8vp9:B (3.18) BS03 A1ACX N/A GO:0005515 ... A3DCU1 39428489
    893951 8vp9:B (3.18) BS04 A1ACX N/A GO:0005515 ... A3DCU1 39428489
    893952 8vpa:A (3.11) BS01 ADP N/A GO:0005515 ... A3DCU1 39428489
    893953 8vpa:A (3.11) BS02 ADP N/A GO:0005515 ... A3DCU1 39428489
    893954 8vpa:B (3.11) BS01 ADP N/A GO:0005515 ... A3DCU1 39428489
    893955 8vpa:B (3.11) BS02 ADP N/A GO:0005515 ... A3DCU1 39428489
    893956 8vpb:A (3.23) BS01 ADP N/A GO:0005515 ... A3DCU1 39428489
    893957 8vpb:A (3.23) BS02 MG N/A GO:0005515 ... A3DCU1 39428489
    893958 8vpb:B (3.23) BS01 ADP N/A GO:0005515 ... A3DCU1 39428489
    893959 8vpb:B (3.23) BS02 MG N/A GO:0005515 ... A3DCU1 39428489
    893960 8vpg:A (3.05) BS01 dna N/A GO:0003676 ... A0A031WG99 38617249
    893961 8vpg:A (3.05) BS02 dna N/A GO:0003676 ... A0A031WG99 38617249
    893962 8vpg:A (3.05) BS03 dna N/A GO:0003676 ... A0A031WG99 38617249
    893963 8vpg:B (3.05) BS01 dna N/A GO:0003676 ... A0A031WG99 38617249
    893964 8vpg:B (3.05) BS02 dna N/A GO:0003676 ... A0A031WG99 38617249
    893965 8vpg:C (3.05) BS01 dna N/A GO:0003676 ... A0A031WG99 38617249
    893966 8vpg:C (3.05) BS02 dna N/A GO:0003676 ... A0A031WG99 38617249
    893967 8vph:A (3.18) BS01 dna N/A GO:0003676 ... A0A031WG99 38617249
    893968 8vph:A (3.18) BS02 dna N/A GO:0003676 ... A0A031WG99 38617249
    893969 8vph:A (3.18) BS03 dna N/A GO:0003676 ... A0A031WG99 38617249
    893970 8vph:A (3.18) BS04 Q8Y N/A GO:0003676 ... A0A031WG99 38617249
    893971 8vph:B (3.18) BS01 dna N/A GO:0003676 ... A0A031WG99 38617249
    893972 8vph:B (3.18) BS02 dna N/A GO:0003676 ... A0A031WG99 38617249
    893973 8vph:B (3.18) BS03 Q8Y N/A GO:0003676 ... A0A031WG99 38617249
    893974 8vph:C (3.18) BS01 dna N/A GO:0003676 ... A0A031WG99 38617249
    893975 8vph:C (3.18) BS02 dna N/A GO:0003676 ... A0A031WG99 38617249
    893976 8vph:C (3.18) BS03 Q8Y N/A GO:0003676 ... A0A031WG99 38617249
    893977 8vpi:A (2.89) BS01 dna N/A GO:0003676 ... A0A031WG99 38617249
    893978 8vpi:A (2.89) BS02 dna N/A GO:0003676 ... A0A031WG99 38617249
    893979 8vpi:A (2.89) BS03 dna N/A GO:0003676 ... A0A031WG99 38617249
    893980 8vpi:B (2.89) BS01 dna N/A GO:0003676 ... A0A031WG99 38617249
    893981 8vpi:B (2.89) BS02 dna N/A GO:0003676 ... A0A031WG99 38617249
    893982 8vpi:C (2.89) BS01 dna N/A GO:0003676 ... A0A031WG99 38617249
    893983 8vpi:C (2.89) BS02 dna N/A GO:0003676 ... A0A031WG99 38617249
    893984 8vpn:A (2.7) BS01 BL1 N/A GO:0005886 ... J3QSS1 39143061
    893985 8vpn:A (2.7) BS02 ATP N/A GO:0005886 ... J3QSS1 39143061
    893986 8vpn:B (2.7) BS01 ATP N/A GO:0005886 ... J3QSS1 39143061
    893987 8vpo:A (1.66) BS01 SF4 4.1.-.- GO:0003824 ... A0A1M6T2I7 38295270
    893988 8vpo:A (1.66) BS02 SF4 4.1.-.- GO:0003824 ... A0A1M6T2I7 38295270
    893989 8vpp:A (2.9) BS01 KLT N/A GO:0005886 ... J3QSS1 39143061
    893990 8vpq:C (3.3) BS01 ZN N/A GO:0000118 ... Q13547 N/A
    893991 8vpq:C (3.3) BS02 IHP N/A GO:0000118 ... Q13547 N/A
    893992 8vpq:D (3.3) BS01 IHP N/A GO:0000118 ... Q9UKL0 N/A
    893993 8vpr:A (2.7) BS01 peptide N/A GO:0005737 ... P52293 38811007
    893994 8vpu:A (2.1) BS01 peptide N/A GO:0005737 ... P52293 38811007
    893995 8vq1:A (1.3) BS01 QCV ? GO:0006355 ... Q4K977 38536910
    893996 8vq2:A (3.829) BS01 dna N/A GO:0000166 ... I7GY94 39140041
    893997 8vq2:A (3.829) BS02 dna N/A GO:0000166 ... I7GY94 39140041
    893998 8vq2:A (3.829) BS03 A1AC6 N/A GO:0000166 ... I7GY94 39140041
    893999 8vq2:B (3.829) BS01 dna N/A GO:0000166 ... I7GY94 39140041
    894000 8vq2:B (3.829) BS02 dna N/A GO:0000166 ... I7GY94 39140041

    Reference:
  • Chengxin Zhang, Xi Zhang, Lydia Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).