SEQ2FUN

BioLiP
Download all results in tab-seperated text for 1072681 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
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  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.

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    # PDB
    (Resolution Å)     		Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    893801 8upo:AB (5.5) BS01 dna ? GO:0001000 ... P0AFW0 39117885
    893802 8upo:AE (5.5) BS01 dna 2.7.7.6 GO:0000287 ... P0A8T7 39117885
    893803 8upo:AE (5.5) BS02 dna 2.7.7.6 GO:0000287 ... P0A8T7 39117885
    893804 8upo:AE (5.5) BS03 rna 2.7.7.6 GO:0000287 ... P0A8T7 39117885
    893805 8upo:AE (5.5) BS04 MG 2.7.7.6 GO:0000287 ... P0A8T7 39117885
    893806 8upo:AE (5.5) BS05 ZN 2.7.7.6 GO:0000287 ... P0A8T7 39117885
    893807 8upo:AE (5.5) BS06 ZN 2.7.7.6 GO:0000287 ... P0A8T7 39117885
    893808 8upo:C (5.5) BS01 rna ? GO:0002181 ... P0A7T7 39117885
    893809 8upo:E (5.5) BS01 rna ? GO:0000028 ... P0A7U7 39117885
    893810 8upo:F (5.5) BS01 rna ? GO:0000028 ... P68679 39117885
    893811 8upo:G (5.5) BS01 rna ? GO:0000028 ... P0A7V0 39117885
    893812 8upo:I (5.5) BS01 rna ? GO:0000028 ... P0A7V3 39117885
    893813 8upo:J (5.5) BS01 rna ? GO:0000028 ... P0A7V8 39117885
    893814 8upo:K (5.5) BS01 rna ? GO:0000028 ... P0A7W1 39117885
    893815 8upo:K (5.5) BS02 rna ? GO:0000028 ... P0A7W1 39117885
    893816 8upo:L (5.5) BS01 rna ? GO:0002181 ... P02358 39117885
    893817 8upo:M (5.5) BS01 rna ? GO:0000028 ... P02359 39117885
    893818 8upo:M (5.5) BS02 rna ? GO:0000028 ... P02359 39117885
    893819 8upo:N (5.5) BS01 rna N/A GO:0000028 ... P0A7W7 39117885
    893820 8upo:O (5.5) BS01 rna N/A GO:0002181 ... P0A7X3 39117885
    893821 8upo:P (5.5) BS01 rna N/A GO:0000049 ... P0A7R5 39117885
    893822 8upo:Q (5.5) BS01 rna ? GO:0002181 ... P0A7R9 39117885
    893823 8upo:R (5.5) BS01 rna ? GO:0000049 ... P0A7S3 39117885
    893824 8upo:S (5.5) BS01 rna N/A GO:0000028 ... P0AG59 39117885
    893825 8upo:T (5.5) BS01 rna N/A GO:0000028 ... P0ADZ4 39117885
    893826 8upo:T (5.5) BS02 rna N/A GO:0000028 ... P0ADZ4 39117885
    893827 8upo:U (5.5) BS01 rna ? GO:0000028 ... P0A7T3 39117885
    893828 8upo:V (5.5) BS01 rna N/A GO:0000028 ... P0AG63 39117885
    893829 8upo:W (5.5) BS01 rna N/A GO:0002181 ... P0A7U3 39117885
    893830 8upo:X (5.5) BS01 rna ? GO:0000049 ... P0A7S9 39117885
    893831 8upo:X (5.5) BS02 rna ? GO:0000049 ... P0A7S9 39117885
    893832 8upo:Y (5.5) BS01 rna ? GO:0000027 ... P0A7J7 39117885
    893833 8upo:b (5.5) BS01 rna ? GO:0000027 ... P0A7L8 39117885
    893834 8upo:b (5.5) BS02 rna ? GO:0000027 ... P0A7L8 39117885
    893835 8upo:c (5.5) BS01 rna ? GO:0003735 ... A0A1X3JA73 39117885
    893836 8upo:e (5.5) BS01 rna N/A GO:0003735 ... N/A 39117885
    893837 8upo:f (5.5) BS01 rna N/A GO:0003735 ... N/A 39117885
    893838 8upo:f (5.5) BS02 rna N/A GO:0003735 ... N/A 39117885
    893839 8upo:g (5.5) BS01 rna ? GO:0002181 ... P0A7M9 39117885
    893840 8upo:h (5.5) BS01 rna ? GO:0000027 ... P60422 39117885
    893841 8upo:i (5.5) BS01 rna N/A GO:0003735 ... N/A 39117885
    893842 8upo:j (5.5) BS01 rna ? GO:0000027 ... P60438 39117885
    893843 8upo:k (5.5) BS01 rna N/A GO:0003735 ... N/A 39117885
    893844 8upo:l (5.5) BS01 rna ? GO:0003735 ... A1AGK6 39117885
    893845 8upo:m (5.5) BS01 rna ? GO:0003735 ... B7MGC4 39117885
    893846 8upo:n (5.5) BS01 rna N/A GO:0003735 ... N/A 39117885
    893847 8upo:n (5.5) BS02 rna N/A GO:0003735 ... N/A 39117885
    893848 8upo:n (5.5) BS03 rna N/A GO:0003735 ... N/A 39117885
    893849 8upo:o (5.5) BS01 rna ? GO:0002181 ... P0A7Q1 39117885
    893850 8upo:p (5.5) BS01 rna ? GO:0002181 ... C3SR17 39117885
    893851 8upo:q (5.5) BS01 rna ? GO:0003735 ... A0A0E2L017 39117885
    893852 8upo:r (5.5) BS01 rna N/A GO:0003735 ... N/A 39117885
    893853 8upo:s (5.5) BS01 rna N/A GO:0003735 ... N/A 39117885
    893854 8upo:t (5.5) BS01 rna ? GO:0003735 ... S1NW45 39117885
    893855 8upo:t (5.5) BS02 rna ? GO:0003735 ... S1NW45 39117885
    893856 8upo:u (5.5) BS01 rna ? GO:0003735 ... A0A037Y8L6 39117885
    893857 8upo:v (5.5) BS01 rna ? GO:0000027 ... P0ADY7 39117885
    893858 8upo:v (5.5) BS02 rna ? GO:0000027 ... P0ADY7 39117885
    893859 8upo:w (5.5) BS01 rna N/A GO:0003735 ... N/A 39117885
    893860 8upo:x (5.5) BS01 rna N/A GO:0003735 ... N/A 39117885
    893861 8upo:x (5.5) BS02 rna N/A GO:0003735 ... N/A 39117885
    893862 8upo:y (5.5) BS01 rna N/A GO:0003735 ... N/A 39117885
    893863 8upo:z (5.5) BS01 rna ? GO:0000027 ... B7MAS6 39117885
    893864 8upp:A (1.78) BS01 NDP 1.1.1.86 GO:0000287 ... Q9PHN5 N/A
    893865 8upp:A (1.78) BS02 X9W 1.1.1.86 GO:0000287 ... Q9PHN5 N/A
    893866 8upp:A (1.78) BS03 X9W 1.1.1.86 GO:0000287 ... Q9PHN5 N/A
    893867 8upp:A (1.78) BS04 MG 1.1.1.86 GO:0000287 ... Q9PHN5 N/A
    893868 8upp:A (1.78) BS05 NDP 1.1.1.86 GO:0000287 ... Q9PHN5 N/A
    893869 8upp:B (1.78) BS01 MG 1.1.1.86 GO:0000287 ... Q9PHN5 N/A
    893870 8upp:B (1.78) BS02 NDP 1.1.1.86 GO:0000287 ... Q9PHN5 N/A
    893871 8upp:B (1.78) BS03 X9W 1.1.1.86 GO:0000287 ... Q9PHN5 N/A
    893872 8upp:B (1.78) BS04 X9W 1.1.1.86 GO:0000287 ... Q9PHN5 N/A
    893873 8upp:B (1.78) BS05 NDP 1.1.1.86 GO:0000287 ... Q9PHN5 N/A
    893874 8upp:C (1.78) BS01 NDP 1.1.1.86 GO:0000287 ... Q9PHN5 N/A
    893875 8upp:C (1.78) BS02 X9W 1.1.1.86 GO:0000287 ... Q9PHN5 N/A
    893876 8upp:C (1.78) BS03 X9W 1.1.1.86 GO:0000287 ... Q9PHN5 N/A
    893877 8upp:C (1.78) BS04 MG 1.1.1.86 GO:0000287 ... Q9PHN5 N/A
    893878 8upp:C (1.78) BS05 NDP 1.1.1.86 GO:0000287 ... Q9PHN5 N/A
    893879 8upp:D (1.78) BS01 MG 1.1.1.86 GO:0000287 ... Q9PHN5 N/A
    893880 8upp:D (1.78) BS02 NDP 1.1.1.86 GO:0000287 ... Q9PHN5 N/A
    893881 8upp:D (1.78) BS03 X9W 1.1.1.86 GO:0000287 ... Q9PHN5 N/A
    893882 8upp:D (1.78) BS04 X9W 1.1.1.86 GO:0000287 ... Q9PHN5 N/A
    893883 8upp:D (1.78) BS05 NDP 1.1.1.86 GO:0000287 ... Q9PHN5 N/A
    893884 8upp:E (1.78) BS01 NDP 1.1.1.86 GO:0000287 ... Q9PHN5 N/A
    893885 8upp:E (1.78) BS02 X9W 1.1.1.86 GO:0000287 ... Q9PHN5 N/A
    893886 8upp:E (1.78) BS03 X9W 1.1.1.86 GO:0000287 ... Q9PHN5 N/A
    893887 8upp:E (1.78) BS04 MG 1.1.1.86 GO:0000287 ... Q9PHN5 N/A
    893888 8upp:E (1.78) BS05 NDP 1.1.1.86 GO:0000287 ... Q9PHN5 N/A
    893889 8upp:F (1.78) BS01 NDP 1.1.1.86 GO:0000287 ... Q9PHN5 N/A
    893890 8upp:F (1.78) BS02 X9W 1.1.1.86 GO:0000287 ... Q9PHN5 N/A
    893891 8upp:F (1.78) BS03 X9W 1.1.1.86 GO:0000287 ... Q9PHN5 N/A
    893892 8upp:F (1.78) BS04 MG 1.1.1.86 GO:0000287 ... Q9PHN5 N/A
    893893 8upp:F (1.78) BS05 NDP 1.1.1.86 GO:0000287 ... Q9PHN5 N/A
    893894 8upp:G (1.78) BS01 MG 1.1.1.86 GO:0000287 ... Q9PHN5 N/A
    893895 8upp:G (1.78) BS02 NDP 1.1.1.86 GO:0000287 ... Q9PHN5 N/A
    893896 8upp:G (1.78) BS03 X9W 1.1.1.86 GO:0000287 ... Q9PHN5 N/A
    893897 8upp:G (1.78) BS04 X9W 1.1.1.86 GO:0000287 ... Q9PHN5 N/A
    893898 8upp:H (1.78) BS01 MG 1.1.1.86 GO:0000287 ... Q9PHN5 N/A
    893899 8upp:H (1.78) BS02 X9W 1.1.1.86 GO:0000287 ... Q9PHN5 N/A
    893900 8upp:H (1.78) BS03 NDP 1.1.1.86 GO:0000287 ... Q9PHN5 N/A
    893901 8upp:H (1.78) BS04 X9W 1.1.1.86 GO:0000287 ... Q9PHN5 N/A
    893902 8upp:H (1.78) BS05 NDP 1.1.1.86 GO:0000287 ... Q9PHN5 N/A
    893903 8upp:I (1.78) BS01 MG 1.1.1.86 GO:0000287 ... Q9PHN5 N/A
    893904 8upp:I (1.78) BS02 X9W 1.1.1.86 GO:0000287 ... Q9PHN5 N/A
    893905 8upp:I (1.78) BS03 NDP 1.1.1.86 GO:0000287 ... Q9PHN5 N/A
    893906 8upp:I (1.78) BS04 X9W 1.1.1.86 GO:0000287 ... Q9PHN5 N/A
    893907 8upp:I (1.78) BS05 NDP 1.1.1.86 GO:0000287 ... Q9PHN5 N/A
    893908 8upp:J (1.78) BS01 X9W 1.1.1.86 GO:0000287 ... Q9PHN5 N/A
    893909 8upp:J (1.78) BS02 NDP 1.1.1.86 GO:0000287 ... Q9PHN5 N/A
    893910 8upp:J (1.78) BS03 MG 1.1.1.86 GO:0000287 ... Q9PHN5 N/A
    893911 8upp:J (1.78) BS04 X9W 1.1.1.86 GO:0000287 ... Q9PHN5 N/A
    893912 8upp:J (1.78) BS05 NDP 1.1.1.86 GO:0000287 ... Q9PHN5 N/A
    893913 8upp:K (1.78) BS01 X9W 1.1.1.86 GO:0000287 ... Q9PHN5 N/A
    893914 8upp:K (1.78) BS02 NDP 1.1.1.86 GO:0000287 ... Q9PHN5 N/A
    893915 8upp:K (1.78) BS03 X9W 1.1.1.86 GO:0000287 ... Q9PHN5 N/A
    893916 8upp:K (1.78) BS04 MG 1.1.1.86 GO:0000287 ... Q9PHN5 N/A
    893917 8upp:K (1.78) BS05 NDP 1.1.1.86 GO:0000287 ... Q9PHN5 N/A
    893918 8upp:L (1.78) BS01 MG 1.1.1.86 GO:0000287 ... Q9PHN5 N/A
    893919 8upp:L (1.78) BS02 NDP 1.1.1.86 GO:0000287 ... Q9PHN5 N/A
    893920 8upp:L (1.78) BS03 X9W 1.1.1.86 GO:0000287 ... Q9PHN5 N/A
    893921 8upp:L (1.78) BS04 X9W 1.1.1.86 GO:0000287 ... Q9PHN5 N/A
    893922 8upq:A (2.45) BS01 MG 1.1.1.86 GO:0000287 ... Q9PHN5 N/A
    893923 8upq:A (2.45) BS02 XAI 1.1.1.86 GO:0000287 ... Q9PHN5 N/A
    893924 8upq:A (2.45) BS03 XAI 1.1.1.86 GO:0000287 ... Q9PHN5 N/A
    893925 8upq:B (2.45) BS01 XAI 1.1.1.86 GO:0000287 ... Q9PHN5 N/A
    893926 8upq:B (2.45) BS02 MG 1.1.1.86 GO:0000287 ... Q9PHN5 N/A
    893927 8upq:B (2.45) BS03 XAI 1.1.1.86 GO:0000287 ... Q9PHN5 N/A
    893928 8upq:C (2.45) BS01 MG 1.1.1.86 GO:0000287 ... Q9PHN5 N/A
    893929 8upq:C (2.45) BS02 XAI 1.1.1.86 GO:0000287 ... Q9PHN5 N/A
    893930 8upq:C (2.45) BS03 XAI 1.1.1.86 GO:0000287 ... Q9PHN5 N/A
    893931 8upq:D (2.45) BS01 XAI 1.1.1.86 GO:0000287 ... Q9PHN5 N/A
    893932 8upq:D (2.45) BS02 MG 1.1.1.86 GO:0000287 ... Q9PHN5 N/A
    893933 8upq:D (2.45) BS03 XAI 1.1.1.86 GO:0000287 ... Q9PHN5 N/A
    893934 8upq:E (2.45) BS01 MG 1.1.1.86 GO:0000287 ... Q9PHN5 N/A
    893935 8upq:E (2.45) BS02 XAI 1.1.1.86 GO:0000287 ... Q9PHN5 N/A
    893936 8upq:F (2.45) BS01 MG 1.1.1.86 GO:0000287 ... Q9PHN5 N/A
    893937 8upq:F (2.45) BS02 XAI 1.1.1.86 GO:0000287 ... Q9PHN5 N/A
    893938 8upr:0 (5.3) BS01 rna N/A GO:0002181 ... P0AG48 39117885
    893939 8upr:1 (5.3) BS01 rna ? GO:0002181 ... P61175 39117885
    893940 8upr:2 (5.3) BS01 rna N/A GO:0000027 ... P0ADZ0 39117885
    893941 8upr:3 (5.3) BS01 rna N/A GO:0000027 ... P60624 39117885
    893942 8upr:4 (5.3) BS01 rna N/A GO:0000027 ... P68919 39117885
    893943 8upr:9 (5.3) BS01 rna ? GO:0002181 ... P0A7J3 39117885
    893944 8upr:AA (5.3) BS01 dna 2.7.7.6 GO:0000345 ... P0A8V2 39117885
    893945 8upr:AA (5.3) BS02 dna 2.7.7.6 GO:0000345 ... P0A8V2 39117885
    893946 8upr:AA (5.3) BS03 rna 2.7.7.6 GO:0000345 ... P0A8V2 39117885
    893947 8upr:AB (5.3) BS01 dna ? GO:0001000 ... P0AFW0 39117885
    893948 8upr:AE (5.3) BS01 dna 2.7.7.6 GO:0000287 ... P0A8T7 39117885
    893949 8upr:AE (5.3) BS02 dna 2.7.7.6 GO:0000287 ... P0A8T7 39117885
    893950 8upr:AE (5.3) BS03 rna 2.7.7.6 GO:0000287 ... P0A8T7 39117885
    893951 8upr:AE (5.3) BS04 MG 2.7.7.6 GO:0000287 ... P0A8T7 39117885
    893952 8upr:AE (5.3) BS05 ZN 2.7.7.6 GO:0000287 ... P0A8T7 39117885
    893953 8upr:AE (5.3) BS06 ZN 2.7.7.6 GO:0000287 ... P0A8T7 39117885
    893954 8upr:AF (5.3) BS01 rna 2.7.7.6 GO:0000345 ... P0A800 39117885
    893955 8upr:C (5.3) BS01 rna ? GO:0002181 ... P0A7T7 39117885
    893956 8upr:E (5.3) BS01 rna ? GO:0000028 ... P0A7U7 39117885
    893957 8upr:F (5.3) BS01 rna ? GO:0000028 ... P68679 39117885
    893958 8upr:G (5.3) BS01 rna ? GO:0000028 ... P0A7V0 39117885
    893959 8upr:I (5.3) BS01 rna ? GO:0000028 ... P0A7V3 39117885
    893960 8upr:I (5.3) BS02 rna ? GO:0000028 ... P0A7V3 39117885
    893961 8upr:J (5.3) BS01 rna ? GO:0000028 ... P0A7V8 39117885
    893962 8upr:K (5.3) BS01 rna ? GO:0000028 ... P0A7W1 39117885
    893963 8upr:K (5.3) BS02 rna ? GO:0000028 ... P0A7W1 39117885
    893964 8upr:L (5.3) BS01 rna ? GO:0002181 ... P02358 39117885
    893965 8upr:M (5.3) BS01 rna ? GO:0000028 ... P02359 39117885
    893966 8upr:M (5.3) BS02 rna ? GO:0000028 ... P02359 39117885
    893967 8upr:N (5.3) BS01 rna N/A GO:0000028 ... P0A7W7 39117885
    893968 8upr:O (5.3) BS01 rna N/A GO:0002181 ... P0A7X3 39117885
    893969 8upr:P (5.3) BS01 rna N/A GO:0000049 ... P0A7R5 39117885
    893970 8upr:Q (5.3) BS01 rna ? GO:0002181 ... P0A7R9 39117885
    893971 8upr:R (5.3) BS01 rna ? GO:0000049 ... P0A7S3 39117885
    893972 8upr:S (5.3) BS01 rna N/A GO:0000028 ... P0AG59 39117885
    893973 8upr:T (5.3) BS01 rna N/A GO:0000028 ... P0ADZ4 39117885
    893974 8upr:T (5.3) BS02 rna N/A GO:0000028 ... P0ADZ4 39117885
    893975 8upr:U (5.3) BS01 rna ? GO:0000028 ... P0A7T3 39117885
    893976 8upr:V (5.3) BS01 rna N/A GO:0000028 ... P0AG63 39117885
    893977 8upr:W (5.3) BS01 rna N/A GO:0002181 ... P0A7U3 39117885
    893978 8upr:X (5.3) BS01 rna ? GO:0000049 ... P0A7S9 39117885
    893979 8upr:X (5.3) BS02 rna ? GO:0000049 ... P0A7S9 39117885
    893980 8upr:Y (5.3) BS01 rna ? GO:0000027 ... P0A7J7 39117885
    893981 8upr:b (5.3) BS01 rna ? GO:0000027 ... P0A7L8 39117885
    893982 8upr:b (5.3) BS02 rna ? GO:0000027 ... P0A7L8 39117885
    893983 8upr:c (5.3) BS01 rna ? GO:0003735 ... A0A1X3JA73 39117885
    893984 8upr:e (5.3) BS01 rna N/A GO:0003735 ... N/A 39117885
    893985 8upr:f (5.3) BS01 rna N/A GO:0003735 ... N/A 39117885
    893986 8upr:f (5.3) BS02 rna N/A GO:0003735 ... N/A 39117885
    893987 8upr:g (5.3) BS01 rna ? GO:0002181 ... P0A7M9 39117885
    893988 8upr:h (5.3) BS01 rna ? GO:0000027 ... P60422 39117885
    893989 8upr:i (5.3) BS01 rna N/A GO:0003735 ... N/A 39117885
    893990 8upr:j (5.3) BS01 rna ? GO:0000027 ... P60438 39117885
    893991 8upr:k (5.3) BS01 rna N/A GO:0003735 ... N/A 39117885
    893992 8upr:l (5.3) BS01 rna ? GO:0003735 ... A1AGK6 39117885
    893993 8upr:m (5.3) BS01 rna ? GO:0003735 ... B7MGC4 39117885
    893994 8upr:n (5.3) BS01 rna N/A GO:0003735 ... N/A 39117885
    893995 8upr:n (5.3) BS02 rna N/A GO:0003735 ... N/A 39117885
    893996 8upr:n (5.3) BS03 rna N/A GO:0003735 ... N/A 39117885
    893997 8upr:o (5.3) BS01 rna ? GO:0002181 ... P0A7Q1 39117885
    893998 8upr:p (5.3) BS01 rna ? GO:0002181 ... C3SR17 39117885
    893999 8upr:q (5.3) BS01 rna ? GO:0003735 ... A0A0E2L017 39117885
    894000 8upr:r (5.3) BS01 rna N/A GO:0003735 ... N/A 39117885
    Reference:
  • Chengxin Zhang, Xi Zhang, Lydia Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).