SEQ2FUN

BioLiP
Download all results in tab-seperated text for 942758 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.
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    # PDB
    (Resolution Å)
    Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    894601 8vtu:1G (2.4) BS04 MG N/A GO:0000049 ... Q5SHQ0 39039256
    894602 8vtu:1H (2.4) BS01 rna N/A GO:0002181 ... P0DOY8 39039256
    894603 8vtu:1I (2.4) BS01 rna N/A GO:0003735 ... Q5SLQ1 39039256
    894604 8vtu:1I (2.4) BS02 MG N/A GO:0003735 ... Q5SLQ1 39039256
    894605 8vtu:1N (2.4) BS01 rna N/A GO:0003729 ... P60488 39039256
    894606 8vtu:1N (2.4) BS02 MG N/A GO:0003729 ... P60488 39039256
    894607 8vtu:1N (2.4) BS03 MG N/A GO:0003729 ... P60488 39039256
    894608 8vtu:1N (2.4) BS04 MG N/A GO:0003729 ... P60488 39039256
    894609 8vtu:1O (2.4) BS01 rna N/A GO:0003735 ... Q5SHP8 39039256
    894610 8vtu:1O (2.4) BS02 rna N/A GO:0003735 ... Q5SHP8 39039256
    894611 8vtu:1O (2.4) BS03 MG N/A GO:0003735 ... Q5SHP8 39039256
    894612 8vtu:1O (2.4) BS04 MG N/A GO:0003735 ... Q5SHP8 39039256
    894613 8vtu:1P (2.4) BS01 rna N/A GO:0003735 ... Q5SHQ7 39039256
    894614 8vtu:1P (2.4) BS02 MG N/A GO:0003735 ... Q5SHQ7 39039256
    894615 8vtu:1P (2.4) BS03 MG N/A GO:0003735 ... Q5SHQ7 39039256
    894616 8vtu:1P (2.4) BS04 MG N/A GO:0003735 ... Q5SHQ7 39039256
    894617 8vtu:1P (2.4) BS05 MG N/A GO:0003735 ... Q5SHQ7 39039256
    894618 8vtu:1Q (2.4) BS01 rna N/A GO:0000049 ... P60489 39039256
    894619 8vtu:1Q (2.4) BS02 rna N/A GO:0000049 ... P60489 39039256
    894620 8vtu:1Q (2.4) BS03 rna N/A GO:0000049 ... P60489 39039256
    894621 8vtu:1Q (2.4) BS04 rna N/A GO:0000049 ... P60489 39039256
    894622 8vtu:1Q (2.4) BS05 MG N/A GO:0000049 ... P60489 39039256
    894623 8vtu:1Q (2.4) BS06 MG N/A GO:0000049 ... P60489 39039256
    894624 8vtu:1Q (2.4) BS07 MG N/A GO:0000049 ... P60489 39039256
    894625 8vtu:1Q (2.4) BS08 MG N/A GO:0000049 ... P60489 39039256
    894626 8vtu:1Q (2.4) BS09 MG N/A GO:0000049 ... P60489 39039256
    894627 8vtu:1R (2.4) BS01 rna N/A GO:0003735 ... Q9Z9H5 39039256
    894628 8vtu:1R (2.4) BS02 MG N/A GO:0003735 ... Q9Z9H5 39039256
    894629 8vtu:1R (2.4) BS03 MG N/A GO:0003735 ... Q9Z9H5 39039256
    894630 8vtu:1S (2.4) BS01 rna N/A GO:0003735 ... Q5SHQ4 39039256
    894631 8vtu:1S (2.4) BS02 rna N/A GO:0003735 ... Q5SHQ4 39039256
    894632 8vtu:1S (2.4) BS03 MG N/A GO:0003735 ... Q5SHQ4 39039256
    894633 8vtu:1S (2.4) BS04 MG N/A GO:0003735 ... Q5SHQ4 39039256
    894634 8vtu:1T (2.4) BS01 rna N/A GO:0003735 ... P60490 39039256
    894635 8vtu:1T (2.4) BS02 rna N/A GO:0003735 ... P60490 39039256
    894636 8vtu:1U (2.4) BS01 rna N/A GO:0000027 ... P60491 39039256
    894637 8vtu:1U (2.4) BS02 MG N/A GO:0000027 ... P60491 39039256
    894638 8vtu:1U (2.4) BS03 MG N/A GO:0000027 ... P60491 39039256
    894639 8vtu:1U (2.4) BS04 MG N/A GO:0000027 ... P60491 39039256
    894640 8vtu:1U (2.4) BS05 MG N/A GO:0000027 ... P60491 39039256
    894641 8vtu:1U (2.4) BS06 MG N/A GO:0000027 ... P60491 39039256
    894642 8vtu:1U (2.4) BS07 MG N/A GO:0000027 ... P60491 39039256
    894643 8vtu:1U (2.4) BS08 MG N/A GO:0000027 ... P60491 39039256
    894644 8vtu:1V (2.4) BS01 rna N/A GO:0003723 ... P60492 39039256
    894645 8vtu:1V (2.4) BS02 MG N/A GO:0003723 ... P60492 39039256
    894646 8vtu:1V (2.4) BS03 MG N/A GO:0003723 ... P60492 39039256
    894647 8vtu:1V (2.4) BS04 MG N/A GO:0003723 ... P60492 39039256
    894648 8vtu:1V (2.4) BS05 MG N/A GO:0003723 ... P60492 39039256
    894649 8vtu:1V (2.4) BS06 MG N/A GO:0003723 ... P60492 39039256
    894650 8vtu:1V (2.4) BS07 MG N/A GO:0003723 ... P60492 39039256
    894651 8vtu:1W (2.4) BS01 rna N/A GO:0003735 ... Q5SHP3 39039256
    894652 8vtu:1W (2.4) BS02 MG N/A GO:0003735 ... Q5SHP3 39039256
    894653 8vtu:1W (2.4) BS03 MG N/A GO:0003735 ... Q5SHP3 39039256
    894654 8vtu:1W (2.4) BS04 MG N/A GO:0003735 ... Q5SHP3 39039256
    894655 8vtu:1W (2.4) BS05 MG N/A GO:0003735 ... Q5SHP3 39039256
    894656 8vtu:1X (2.4) BS01 rna N/A GO:0003735 ... Q5SHP0 39039256
    894657 8vtu:1X (2.4) BS02 MG N/A GO:0003735 ... Q5SHP0 39039256
    894658 8vtu:1X (2.4) BS03 MG N/A GO:0003735 ... Q5SHP0 39039256
    894659 8vtu:1X (2.4) BS04 MG N/A GO:0003735 ... Q5SHP0 39039256
    894660 8vtu:1X (2.4) BS05 MG N/A GO:0003735 ... Q5SHP0 39039256
    894661 8vtu:1X (2.4) BS06 MG N/A GO:0003735 ... Q5SHP0 39039256
    894662 8vtu:1Y (2.4) BS01 rna N/A GO:0003723 ... Q5SHP9 39039256
    894663 8vtu:1Y (2.4) BS02 MG N/A GO:0003723 ... Q5SHP9 39039256
    894664 8vtu:1Y (2.4) BS03 MG N/A GO:0003723 ... Q5SHP9 39039256
    894665 8vtu:1Y (2.4) BS04 ZN N/A GO:0003723 ... Q5SHP9 39039256
    894666 8vtu:1Z (2.4) BS01 rna N/A GO:0003723 ... Q5SHZ1 39039256
    894667 8vtu:1Z (2.4) BS02 rna N/A GO:0003723 ... Q5SHZ1 39039256
    894668 8vtu:1b (2.4) BS01 rna N/A GO:0003735 ... P80371 39039256
    894669 8vtu:1c (2.4) BS01 rna N/A GO:0003676 ... P80372 39039256
    894670 8vtu:1d (2.4) BS01 rna N/A GO:0003723 ... P80373 39039256
    894671 8vtu:1d (2.4) BS02 SF4 N/A GO:0003723 ... P80373 39039256
    894672 8vtu:1e (2.4) BS01 rna N/A GO:0003723 ... Q5SHQ5 39039256
    894673 8vtu:1e (2.4) BS02 MG N/A GO:0003723 ... Q5SHQ5 39039256
    894674 8vtu:1e (2.4) BS03 MG N/A GO:0003723 ... Q5SHQ5 39039256
    894675 8vtu:1f (2.4) BS01 rna N/A GO:0003735 ... Q5SLP8 39039256
    894676 8vtu:1f (2.4) BS02 MG N/A GO:0003735 ... Q5SLP8 39039256
    894677 8vtu:1g (2.4) BS01 rna N/A GO:0000049 ... P17291 39039256
    894678 8vtu:1g (2.4) BS02 rna N/A GO:0000049 ... P17291 39039256
    894679 8vtu:1h (2.4) BS01 rna N/A GO:0003735 ... P0DOY9 39039256
    894680 8vtu:1i (2.4) BS01 rna N/A GO:0000049 ... P80374 39039256
    894681 8vtu:1i (2.4) BS02 rna N/A GO:0000049 ... P80374 39039256
    894682 8vtu:1j (2.4) BS01 rna N/A GO:0000049 ... Q5SHN7 39039256
    894683 8vtu:1k (2.4) BS01 rna N/A GO:0003735 ... P80376 39039256
    894684 8vtu:1k (2.4) BS02 MG N/A GO:0003735 ... P80376 39039256
    894685 8vtu:1l (2.4) BS01 rna N/A GO:0000049 ... Q5SHN3 39039256
    894686 8vtu:1l (2.4) BS02 rna N/A GO:0000049 ... Q5SHN3 39039256
    894687 8vtu:1l (2.4) BS03 MG N/A GO:0000049 ... Q5SHN3 39039256
    894688 8vtu:1m (2.4) BS01 rna N/A GO:0000049 ... P80377 39039256
    894689 8vtu:1m (2.4) BS02 rna N/A GO:0000049 ... P80377 39039256
    894690 8vtu:1m (2.4) BS03 rna N/A GO:0000049 ... P80377 39039256
    894691 8vtu:1m (2.4) BS04 MG N/A GO:0000049 ... P80377 39039256
    894692 8vtu:1n (2.4) BS01 rna N/A GO:0003735 ... P0DOY6 39039256
    894693 8vtu:1n (2.4) BS02 ZN N/A GO:0003735 ... P0DOY6 39039256
    894694 8vtu:1o (2.4) BS01 rna N/A GO:0003735 ... Q5SJ76 39039256
    894695 8vtu:1o (2.4) BS02 rna N/A GO:0003735 ... Q5SJ76 39039256
    894696 8vtu:1p (2.4) BS01 rna N/A GO:0003735 ... Q5SJH3 39039256
    894697 8vtu:1q (2.4) BS01 rna N/A GO:0003735 ... P0DOY7 39039256
    894698 8vtu:1r (2.4) BS01 rna N/A GO:0003735 ... Q5SLQ0 39039256
    894699 8vtu:1s (2.4) BS01 rna N/A GO:0000028 ... Q5SHP2 39039256
    894700 8vtu:1t (2.4) BS01 rna N/A GO:0003723 ... P80380 39039256
    894701 8vtu:1t (2.4) BS02 MG N/A GO:0003723 ... P80380 39039256
    894702 8vtu:20 (2.4) BS01 rna N/A GO:0003735 ... P60493 39039256
    894703 8vtu:20 (2.4) BS02 rna N/A GO:0003735 ... P60493 39039256
    894704 8vtu:20 (2.4) BS03 rna N/A GO:0003735 ... P60493 39039256
    894705 8vtu:21 (2.4) BS01 rna N/A GO:0003735 ... P60494 39039256
    894706 8vtu:21 (2.4) BS02 rna N/A GO:0003735 ... P60494 39039256
    894707 8vtu:21 (2.4) BS03 MG N/A GO:0003735 ... P60494 39039256
    894708 8vtu:22 (2.4) BS01 rna N/A GO:0003735 ... Q5SHP6 39039256
    894709 8vtu:23 (2.4) BS01 rna N/A GO:0003735 ... Q5SHQ6 39039256
    894710 8vtu:23 (2.4) BS02 rna N/A GO:0003735 ... Q5SHQ6 39039256
    894711 8vtu:23 (2.4) BS03 MG N/A GO:0003735 ... Q5SHQ6 39039256
    894712 8vtu:24 (2.4) BS01 rna N/A GO:0003735 ... Q5SJE1 39039256
    894713 8vtu:24 (2.4) BS02 ZN N/A GO:0003735 ... Q5SJE1 39039256
    894714 8vtu:25 (2.4) BS01 rna N/A GO:0003735 ... P80339 39039256
    894715 8vtu:25 (2.4) BS02 MG N/A GO:0003735 ... P80339 39039256
    894716 8vtu:25 (2.4) BS03 ZN N/A GO:0003735 ... P80339 39039256
    894717 8vtu:26 (2.4) BS01 rna N/A GO:0000049 ... P35871 39039256
    894718 8vtu:26 (2.4) BS02 MG N/A GO:0000049 ... P35871 39039256
    894719 8vtu:26 (2.4) BS03 ZN N/A GO:0000049 ... P35871 39039256
    894720 8vtu:27 (2.4) BS01 rna N/A GO:0003735 ... P80340 39039256
    894721 8vtu:27 (2.4) BS02 MG N/A GO:0003735 ... P80340 39039256
    894722 8vtu:27 (2.4) BS03 MG N/A GO:0003735 ... P80340 39039256
    894723 8vtu:28 (2.4) BS01 rna N/A GO:0003735 ... Q5SKU1 39039256
    894724 8vtu:29 (2.4) BS01 rna N/A GO:0003735 ... Q5SHR2 39039256
    894725 8vtu:29 (2.4) BS02 ZN N/A GO:0003735 ... Q5SHR2 39039256
    894726 8vtu:2D (2.4) BS01 rna N/A GO:0002181 ... P60405 39039256
    894727 8vtu:2D (2.4) BS02 rna N/A GO:0002181 ... P60405 39039256
    894728 8vtu:2D (2.4) BS03 MG N/A GO:0002181 ... P60405 39039256
    894729 8vtu:2D (2.4) BS04 MG N/A GO:0002181 ... P60405 39039256
    894730 8vtu:2D (2.4) BS05 MG N/A GO:0002181 ... P60405 39039256
    894731 8vtu:2D (2.4) BS06 MG N/A GO:0002181 ... P60405 39039256
    894732 8vtu:2E (2.4) BS01 rna N/A GO:0003735 ... Q5SHN8 39039256
    894733 8vtu:2E (2.4) BS02 MG N/A GO:0003735 ... Q5SHN8 39039256
    894734 8vtu:2F (2.4) BS01 rna N/A GO:0003735 ... Q5SHN9 39039256
    894735 8vtu:2F (2.4) BS02 MG N/A GO:0003735 ... Q5SHN9 39039256
    894736 8vtu:2F (2.4) BS03 MG N/A GO:0003735 ... Q5SHN9 39039256
    894737 8vtu:2F (2.4) BS04 MG N/A GO:0003735 ... Q5SHN9 39039256
    894738 8vtu:2G (2.4) BS01 rna N/A GO:0000049 ... Q5SHQ0 39039256
    894739 8vtu:2G (2.4) BS02 rna N/A GO:0000049 ... Q5SHQ0 39039256
    894740 8vtu:2G (2.4) BS03 rna N/A GO:0000049 ... Q5SHQ0 39039256
    894741 8vtu:2G (2.4) BS04 MG N/A GO:0000049 ... Q5SHQ0 39039256
    894742 8vtu:2H (2.4) BS01 rna N/A GO:0002181 ... P0DOY8 39039256
    894743 8vtu:2I (2.4) BS01 rna N/A GO:0003735 ... Q5SLQ1 39039256
    894744 8vtu:2N (2.4) BS01 rna N/A GO:0003729 ... P60488 39039256
    894745 8vtu:2O (2.4) BS01 rna N/A GO:0003735 ... Q5SHP8 39039256
    894746 8vtu:2O (2.4) BS02 rna N/A GO:0003735 ... Q5SHP8 39039256
    894747 8vtu:2P (2.4) BS01 rna N/A GO:0003735 ... Q5SHQ7 39039256
    894748 8vtu:2Q (2.4) BS01 rna N/A GO:0000049 ... P60489 39039256
    894749 8vtu:2Q (2.4) BS02 rna N/A GO:0000049 ... P60489 39039256
    894750 8vtu:2Q (2.4) BS03 rna N/A GO:0000049 ... P60489 39039256
    894751 8vtu:2Q (2.4) BS04 rna N/A GO:0000049 ... P60489 39039256
    894752 8vtu:2Q (2.4) BS05 MG N/A GO:0000049 ... P60489 39039256
    894753 8vtu:2Q (2.4) BS06 MG N/A GO:0000049 ... P60489 39039256
    894754 8vtu:2R (2.4) BS01 rna N/A GO:0003735 ... Q9Z9H5 39039256
    894755 8vtu:2S (2.4) BS01 rna N/A GO:0003735 ... Q5SHQ4 39039256
    894756 8vtu:2S (2.4) BS02 rna N/A GO:0003735 ... Q5SHQ4 39039256
    894757 8vtu:2T (2.4) BS01 rna N/A GO:0003735 ... P60490 39039256
    894758 8vtu:2T (2.4) BS02 rna N/A GO:0003735 ... P60490 39039256
    894759 8vtu:2T (2.4) BS03 MG N/A GO:0003735 ... P60490 39039256
    894760 8vtu:2U (2.4) BS01 rna N/A GO:0000027 ... P60491 39039256
    894761 8vtu:2U (2.4) BS02 MG N/A GO:0000027 ... P60491 39039256
    894762 8vtu:2V (2.4) BS01 rna N/A GO:0003723 ... P60492 39039256
    894763 8vtu:2V (2.4) BS02 MG N/A GO:0003723 ... P60492 39039256
    894764 8vtu:2W (2.4) BS01 rna N/A GO:0003735 ... Q5SHP3 39039256
    894765 8vtu:2W (2.4) BS02 MG N/A GO:0003735 ... Q5SHP3 39039256
    894766 8vtu:2X (2.4) BS01 rna N/A GO:0003735 ... Q5SHP0 39039256
    894767 8vtu:2X (2.4) BS02 MG N/A GO:0003735 ... Q5SHP0 39039256
    894768 8vtu:2Y (2.4) BS01 rna N/A GO:0003723 ... Q5SHP9 39039256
    894769 8vtu:2Y (2.4) BS02 ZN N/A GO:0003723 ... Q5SHP9 39039256
    894770 8vtu:2Z (2.4) BS01 rna N/A GO:0003723 ... Q5SHZ1 39039256
    894771 8vtu:2Z (2.4) BS02 rna N/A GO:0003723 ... Q5SHZ1 39039256
    894772 8vtu:2b (2.4) BS01 rna N/A GO:0003735 ... P80371 39039256
    894773 8vtu:2c (2.4) BS01 rna N/A GO:0003676 ... P80372 39039256
    894774 8vtu:2d (2.4) BS01 rna N/A GO:0003723 ... P80373 39039256
    894775 8vtu:2d (2.4) BS02 SF4 N/A GO:0003723 ... P80373 39039256
    894776 8vtu:2e (2.4) BS01 rna N/A GO:0003723 ... Q5SHQ5 39039256
    894777 8vtu:2e (2.4) BS02 MG N/A GO:0003723 ... Q5SHQ5 39039256
    894778 8vtu:2f (2.4) BS01 rna N/A GO:0003735 ... Q5SLP8 39039256
    894779 8vtu:2f (2.4) BS02 MG N/A GO:0003735 ... Q5SLP8 39039256
    894780 8vtu:2g (2.4) BS01 rna N/A GO:0000049 ... P17291 39039256
    894781 8vtu:2g (2.4) BS02 rna N/A GO:0000049 ... P17291 39039256
    894782 8vtu:2h (2.4) BS01 rna N/A GO:0003735 ... P0DOY9 39039256
    894783 8vtu:2i (2.4) BS01 rna N/A GO:0000049 ... P80374 39039256
    894784 8vtu:2i (2.4) BS02 rna N/A GO:0000049 ... P80374 39039256
    894785 8vtu:2j (2.4) BS01 rna N/A GO:0000049 ... Q5SHN7 39039256
    894786 8vtu:2k (2.4) BS01 rna N/A GO:0003735 ... P80376 39039256
    894787 8vtu:2k (2.4) BS02 MG N/A GO:0003735 ... P80376 39039256
    894788 8vtu:2l (2.4) BS01 rna N/A GO:0000049 ... Q5SHN3 39039256
    894789 8vtu:2l (2.4) BS02 MG N/A GO:0000049 ... Q5SHN3 39039256
    894790 8vtu:2l (2.4) BS03 MG N/A GO:0000049 ... Q5SHN3 39039256
    894791 8vtu:2l (2.4) BS04 MG N/A GO:0000049 ... Q5SHN3 39039256
    894792 8vtu:2m (2.4) BS01 rna N/A GO:0000049 ... P80377 39039256
    894793 8vtu:2m (2.4) BS02 rna N/A GO:0000049 ... P80377 39039256
    894794 8vtu:2n (2.4) BS01 rna N/A GO:0003735 ... P0DOY6 39039256
    894795 8vtu:2n (2.4) BS02 ZN N/A GO:0003735 ... P0DOY6 39039256
    894796 8vtu:2o (2.4) BS01 rna N/A GO:0003735 ... Q5SJ76 39039256
    894797 8vtu:2o (2.4) BS02 rna N/A GO:0003735 ... Q5SJ76 39039256
    894798 8vtu:2p (2.4) BS01 rna N/A GO:0003735 ... Q5SJH3 39039256
    894799 8vtu:2q (2.4) BS01 rna N/A GO:0003735 ... P0DOY7 39039256
    894800 8vtu:2q (2.4) BS02 MG N/A GO:0003735 ... P0DOY7 39039256

    Reference:
  • Chengxin Zhang, Xi Zhang, Lydia Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).