SEQ2FUN

BioLiP
Download all results in tab-seperated text for 1072681 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
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  • Hover over EC number to view the full name of enzymatic activity.
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    # PDB
    (Resolution Å)
    Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    895001 8ut0:SF (3.22) BS01 rna N/A GO:0000462 ... P0CX51 39900920
    895002 8ut0:SG (3.22) BS01 rna N/A GO:0000028 ... P02407 39900920
    895003 8ut0:SH (3.22) BS01 rna N/A GO:0000054 ... P0CX55 39900920
    895004 8ut0:SI (3.22) BS01 rna N/A GO:0000054 ... P07280 39900920
    895005 8ut0:SJ (3.22) BS01 rna N/A GO:0003723 ... P38701 39900920
    895006 8ut0:SL (3.22) BS01 rna N/A GO:0000028 ... Q3E7X9 39900920
    895007 8ut0:SM (3.22) BS01 rna N/A GO:0002181 ... P41057 39900920
    895008 8ut0:SN (3.22) BS01 rna N/A GO:0003735 ... P05759 39900920
    895009 8ut0:SO (3.22) BS01 rna N/A GO:0001965 ... P38011 39900920
    895010 8ut0:SP (3.22) BS01 rna N/A GO:0003735 ... P32905 39900920
    895011 8ut0:SQ (3.22) BS01 rna N/A GO:0000462 ... P33442 39900920
    895012 8ut0:SR (3.22) BS01 rna N/A GO:0003723 ... P25443 39900920
    895013 8ut0:SS (3.22) BS01 rna N/A GO:0002181 ... P0CX35 39900920
    895014 8ut0:ST (3.22) BS01 rna N/A GO:0000462 ... P0CX37 39900920
    895015 8ut0:SU (3.22) BS01 rna N/A GO:0002181 ... P26786 39900920
    895016 8ut0:SV (3.22) BS01 rna N/A GO:0000462 ... P0CX39 39900920
    895017 8ut0:SW (3.22) BS01 rna N/A GO:0000462 ... O13516 39900920
    895018 8ut0:SX (3.22) BS01 rna N/A GO:0000028 ... P0CX47 39900920
    895019 8ut0:SY (3.22) BS01 rna N/A GO:0000462 ... P05756 39900920
    895020 8ut0:SZ (3.22) BS01 rna N/A GO:0000028 ... P06367 39900920
    895021 8ut0:Sa (3.22) BS01 rna N/A GO:0000447 ... P0C0V8 39900920
    895022 8ut0:Sb (3.22) BS01 rna N/A GO:0002181 ... P0C0W1 39900920
    895023 8ut0:Sc (3.22) BS01 rna N/A GO:0000462 ... P0CX29 39900920
    895024 8ut0:Sd (3.22) BS01 rna N/A GO:0000462 ... P0CX31 39900920
    895025 8ut0:Se (3.22) BS01 rna N/A GO:0003735 ... P39939 39900920
    895026 8ut0:Sf (3.22) BS01 rna N/A GO:0000028 ... P35997 39900920
    895027 8ut0:Sg (3.22) BS01 rna N/A GO:0002181 ... P0CX33 39900920
    895028 8ut0:z (3.22) BS01 rna N/A GO:0005737 ... Q06709 39900920
    895029 8ut0:z (3.22) BS02 rna N/A GO:0005737 ... Q06709 39900920
    895030 8ut1:A (2.3) BS01 CA ? GO:0004888 ... P0ABE7
    P36544
    38382524
    895031 8ut1:A (2.3) BS02 9Z9 ? GO:0004888 ... P0ABE7
    P36544
    38382524
    895032 8ut1:A (2.3) BS03 EPJ ? GO:0004888 ... P0ABE7
    P36544
    38382524
    895033 8ut1:A (2.3) BS04 EPJ ? GO:0004888 ... P0ABE7
    P36544
    38382524
    895034 8ut1:B (2.3) BS01 EPJ ? GO:0004888 ... P0ABE7
    P36544
    38382524
    895035 8ut1:B (2.3) BS02 CA ? GO:0004888 ... P0ABE7
    P36544
    38382524
    895036 8ut1:B (2.3) BS03 9Z9 ? GO:0004888 ... P0ABE7
    P36544
    38382524
    895037 8ut1:B (2.3) BS04 EPJ ? GO:0004888 ... P0ABE7
    P36544
    38382524
    895038 8ut1:C (2.3) BS01 EPJ ? GO:0004888 ... P0ABE7
    P36544
    38382524
    895039 8ut1:C (2.3) BS02 CA ? GO:0004888 ... P0ABE7
    P36544
    38382524
    895040 8ut1:C (2.3) BS03 9Z9 ? GO:0004888 ... P0ABE7
    P36544
    38382524
    895041 8ut1:C (2.3) BS04 EPJ ? GO:0004888 ... P0ABE7
    P36544
    38382524
    895042 8ut1:D (2.3) BS01 EPJ ? GO:0004888 ... P0ABE7
    P36544
    38382524
    895043 8ut1:D (2.3) BS02 CA ? GO:0004888 ... P0ABE7
    P36544
    38382524
    895044 8ut1:D (2.3) BS03 9Z9 ? GO:0004888 ... P0ABE7
    P36544
    38382524
    895045 8ut1:D (2.3) BS04 EPJ ? GO:0004888 ... P0ABE7
    P36544
    38382524
    895046 8ut1:E (2.3) BS01 EPJ ? GO:0004888 ... P0ABE7
    P36544
    38382524
    895047 8ut1:E (2.3) BS02 CA ? GO:0004888 ... P0ABE7
    P36544
    38382524
    895048 8ut1:E (2.3) BS03 9Z9 ? GO:0004888 ... P0ABE7
    P36544
    38382524
    895049 8ut1:E (2.3) BS04 EPJ ? GO:0004888 ... P0ABE7
    P36544
    38382524
    895050 8uta:A (3.05) BS01 rna N/A N/A N/A 38565535
    895051 8uta:B (3.05) BS01 rna N/A N/A N/A 38565535
    895052 8uta:H (3.05) BS01 rna N/A N/A N/A 38565535
    895053 8uta:L (3.05) BS01 rna N/A N/A N/A 38565535
    895054 8utb:A (2.3) BS01 XG3 ? GO:0004888 ... P0ABE7
    P36544
    38382524
    895055 8utb:A (2.3) BS02 EPJ ? GO:0004888 ... P0ABE7
    P36544
    38382524
    895056 8utb:A (2.3) BS03 9Z9 ? GO:0004888 ... P0ABE7
    P36544
    38382524
    895057 8utb:A (2.3) BS04 XG3 ? GO:0004888 ... P0ABE7
    P36544
    38382524
    895058 8utb:A (2.3) BS05 EPJ ? GO:0004888 ... P0ABE7
    P36544
    38382524
    895059 8utb:B (2.3) BS01 XG3 ? GO:0004888 ... P0ABE7
    P36544
    38382524
    895060 8utb:B (2.3) BS02 EPJ ? GO:0004888 ... P0ABE7
    P36544
    38382524
    895061 8utb:B (2.3) BS03 XG3 ? GO:0004888 ... P0ABE7
    P36544
    38382524
    895062 8utb:B (2.3) BS04 EPJ ? GO:0004888 ... P0ABE7
    P36544
    38382524
    895063 8utb:B (2.3) BS05 9Z9 ? GO:0004888 ... P0ABE7
    P36544
    38382524
    895064 8utb:C (2.3) BS01 XG3 ? GO:0004888 ... P0ABE7
    P36544
    38382524
    895065 8utb:C (2.3) BS02 EPJ ? GO:0004888 ... P0ABE7
    P36544
    38382524
    895066 8utb:C (2.3) BS03 XG3 ? GO:0004888 ... P0ABE7
    P36544
    38382524
    895067 8utb:C (2.3) BS04 EPJ ? GO:0004888 ... P0ABE7
    P36544
    38382524
    895068 8utb:C (2.3) BS05 9Z9 ? GO:0004888 ... P0ABE7
    P36544
    38382524
    895069 8utb:D (2.3) BS01 XG3 ? GO:0004888 ... P0ABE7
    P36544
    38382524
    895070 8utb:D (2.3) BS02 EPJ ? GO:0004888 ... P0ABE7
    P36544
    38382524
    895071 8utb:D (2.3) BS03 XG3 ? GO:0004888 ... P0ABE7
    P36544
    38382524
    895072 8utb:D (2.3) BS04 EPJ ? GO:0004888 ... P0ABE7
    P36544
    38382524
    895073 8utb:D (2.3) BS05 9Z9 ? GO:0004888 ... P0ABE7
    P36544
    38382524
    895074 8utb:E (2.3) BS01 XG3 ? GO:0004888 ... P0ABE7
    P36544
    38382524
    895075 8utb:E (2.3) BS02 EPJ ? GO:0004888 ... P0ABE7
    P36544
    38382524
    895076 8utb:E (2.3) BS03 XG3 ? GO:0004888 ... P0ABE7
    P36544
    38382524
    895077 8utb:E (2.3) BS04 EPJ ? GO:0004888 ... P0ABE7
    P36544
    38382524
    895078 8utb:E (2.3) BS05 9Z9 ? GO:0004888 ... P0ABE7
    P36544
    38382524
    895079 8utc:A (2.4) BS01 peptide N/A N/A P01889 N/A
    895080 8utc:C (2.4) BS01 peptide N/A N/A P01889 N/A
    895081 8utd:R (3.24) BS01 XOT N/A GO:0001781 ... Q8TDS4 39631393
    895082 8ute:A (1.45) BS01 XKQ 2.1.1.56
    2.1.1.57
    2.7.7.48
    2.7.7.50
    3.1.13.-
    3.4.19.12
    3.4.22.-
    3.4.22.69
    3.6.4.12
    3.6.4.13
    4.6.1.-
    GO:0008233 ... P0DTD1 38365209
    895083 8uti:AA (3.13) BS01 rna N/A GO:0002181 ... Q3E792 39900920
    895084 8uti:AA (3.13) BS02 rna N/A GO:0002181 ... Q3E792 39900920
    895085 8uti:AA (3.13) BS03 rna N/A GO:0002181 ... Q3E792 39900920
    895086 8uti:LD (3.13) BS01 rna N/A GO:0002181 ... P0CX45 39900920
    895087 8uti:LD (3.13) BS02 rna N/A GO:0002181 ... P0CX45 39900920
    895088 8uti:LE (3.13) BS01 rna N/A GO:0000027 ... P14126 39900920
    895089 8uti:LF (3.13) BS01 rna N/A GO:0002181 ... P10664 39900920
    895090 8uti:LF (3.13) BS02 rna N/A GO:0002181 ... P10664 39900920
    895091 8uti:LG (3.13) BS01 rna N/A GO:0000027 ... P26321 39900920
    895092 8uti:LG (3.13) BS02 rna N/A GO:0000027 ... P26321 39900920
    895093 8uti:LH (3.13) BS01 rna N/A GO:0000027 ... Q02326 39900920
    895094 8uti:LI (3.13) BS01 rna N/A GO:0000463 ... P05737 39900920
    895095 8uti:LI (3.13) BS02 rna N/A GO:0000463 ... P05737 39900920
    895096 8uti:LJ (3.13) BS01 rna N/A GO:0000470 ... P17076 39900920
    895097 8uti:LJ (3.13) BS02 rna N/A GO:0000470 ... P17076 39900920
    895098 8uti:LK (3.13) BS01 rna N/A GO:0002181 ... P05738 39900920
    895099 8uti:LL (3.13) BS01 rna N/A GO:0000027 ... P41805 39900920
    895100 8uti:LL (3.13) BS02 rna N/A GO:0000027 ... P41805 39900920
    895101 8uti:LL (3.13) BS03 rna N/A GO:0000027 ... P41805 39900920
    895102 8uti:LM (3.13) BS01 rna N/A GO:0000027 ... P0C0W9 39900920
    895103 8uti:LM (3.13) BS02 rna N/A GO:0000027 ... P0C0W9 39900920
    895104 8uti:LM (3.13) BS03 rna N/A GO:0000027 ... P0C0W9 39900920
    895105 8uti:LN (3.13) BS01 rna N/A GO:0002181 ... Q12690 39900920
    895106 8uti:LO (3.13) BS01 rna N/A GO:0000027 ... P36105 39900920
    895107 8uti:LP (3.13) BS01 rna N/A GO:0000470 ... P05748 39900920
    895108 8uti:LP (3.13) BS02 rna N/A GO:0000470 ... P05748 39900920
    895109 8uti:LQ (3.13) BS01 rna N/A GO:0000470 ... P26784 39900920
    895110 8uti:LR (3.13) BS01 rna N/A GO:0000448 ... P05740 39900920
    895111 8uti:LR (3.13) BS02 rna N/A GO:0000448 ... P05740 39900920
    895112 8uti:LS (3.13) BS01 rna N/A GO:0002181 ... P0CX49 39900920
    895113 8uti:LT (3.13) BS01 rna N/A GO:0002181 ... P0CX82 39900920
    895114 8uti:LT (3.13) BS02 rna N/A GO:0002181 ... P0CX82 39900920
    895115 8uti:LU (3.13) BS01 rna N/A GO:0002181 ... P0CX23 39900920
    895116 8uti:LU (3.13) BS02 rna N/A GO:0002181 ... P0CX23 39900920
    895117 8uti:LV (3.13) BS01 rna N/A GO:0002181 ... Q02753 39900920
    895118 8uti:LV (3.13) BS02 rna N/A GO:0002181 ... Q02753 39900920
    895119 8uti:LW (3.13) BS01 rna N/A GO:0003735 ... P05749 39900920
    895120 8uti:LX (3.13) BS01 rna N/A GO:0002181 ... P0CX41 39900920
    895121 8uti:LX (3.13) BS02 rna N/A GO:0002181 ... P0CX41 39900920
    895122 8uti:LY (3.13) BS01 rna N/A GO:0003735 ... P04449 39900920
    895123 8uti:LZ (3.13) BS01 rna N/A GO:0003735 ... P04456 39900920
    895124 8uti:LZ (3.13) BS02 rna N/A GO:0003735 ... P04456 39900920
    895125 8uti:La (3.13) BS01 rna N/A GO:0002181 ... P05743 39900920
    895126 8uti:La (3.13) BS02 rna N/A GO:0002181 ... P05743 39900920
    895127 8uti:Lb (3.13) BS01 rna N/A GO:0002181 ... P0C2H6 39900920
    895128 8uti:Lc (3.13) BS01 rna N/A GO:0002181 ... P02406 39900920
    895129 8uti:Ld (3.13) BS01 rna N/A GO:0002181 ... P05747 39900920
    895130 8uti:Le (3.13) BS01 rna N/A GO:0002181 ... P14120 39900920
    895131 8uti:Lf (3.13) BS01 rna N/A GO:0002181 ... P0C2H8 39900920
    895132 8uti:Lg (3.13) BS01 rna N/A GO:0002181 ... P38061 39900920
    895133 8uti:Lh (3.13) BS01 rna N/A GO:0000027 ... P05744 39900920
    895134 8uti:Li (3.13) BS01 rna N/A GO:0002181 ... P87262 39900920
    895135 8uti:Lj (3.13) BS01 rna N/A GO:0000463 ... P0CX84 39900920
    895136 8uti:Lj (3.13) BS02 rna N/A GO:0000463 ... P0CX84 39900920
    895137 8uti:Lk (3.13) BS01 rna N/A GO:0000470 ... P05745 39900920
    895138 8uti:Ll (3.13) BS01 rna N/A GO:0000448 ... P49166 39900920
    895139 8uti:Ll (3.13) BS02 rna N/A GO:0000448 ... P49166 39900920
    895140 8uti:Lm (3.13) BS01 rna N/A GO:0002181 ... P49167 39900920
    895141 8uti:Ln (3.13) BS01 rna N/A GO:0002181 ... P04650 39900920
    895142 8uti:Ln (3.13) BS02 rna N/A GO:0002181 ... P04650 39900920
    895143 8uti:Lo (3.13) BS01 rna N/A GO:0003735 ... P0CH08 39900920
    895144 8uti:Lq (3.13) BS01 rna N/A GO:0002181 ... P0CX27 39900920
    895145 8uti:Lr (3.13) BS01 rna N/A GO:0002181 ... P0CX25 39900920
    895146 8uti:SA (3.13) BS01 rna N/A GO:0000054 ... P05750 39900920
    895147 8uti:SB (3.13) BS01 rna N/A GO:0000054 ... P26783 39900920
    895148 8uti:SB (3.13) BS02 rna N/A GO:0000054 ... P26783 39900920
    895149 8uti:SC (3.13) BS01 rna N/A N/A Q08745 39900920
    895150 8uti:SD (3.13) BS01 rna N/A GO:0003735 ... P48589 39900920
    895151 8uti:SE (3.13) BS01 rna N/A GO:0003723 ... Q01855 39900920
    895152 8uti:SF (3.13) BS01 rna N/A GO:0000462 ... P0CX51 39900920
    895153 8uti:SG (3.13) BS01 rna N/A GO:0000028 ... P02407 39900920
    895154 8uti:SH (3.13) BS01 rna N/A GO:0000054 ... P0CX55 39900920
    895155 8uti:SI (3.13) BS01 rna N/A GO:0000054 ... P07280 39900920
    895156 8uti:SJ (3.13) BS01 rna N/A GO:0003723 ... P38701 39900920
    895157 8uti:SL (3.13) BS01 rna N/A GO:0000028 ... Q3E7X9 39900920
    895158 8uti:SM (3.13) BS01 rna N/A GO:0002181 ... P41057 39900920
    895159 8uti:SN (3.13) BS01 rna N/A GO:0003735 ... P05759 39900920
    895160 8uti:SO (3.13) BS01 rna N/A GO:0001965 ... P38011 39900920
    895161 8uti:SP (3.13) BS01 rna N/A GO:0003735 ... P32905 39900920
    895162 8uti:SQ (3.13) BS01 rna N/A GO:0000462 ... P33442 39900920
    895163 8uti:SR (3.13) BS01 rna N/A GO:0003723 ... P25443 39900920
    895164 8uti:SS (3.13) BS01 rna N/A GO:0002181 ... P0CX35 39900920
    895165 8uti:ST (3.13) BS01 rna N/A GO:0000462 ... P0CX37 39900920
    895166 8uti:SU (3.13) BS01 rna N/A GO:0002181 ... P26786 39900920
    895167 8uti:SV (3.13) BS01 rna N/A GO:0000462 ... P0CX39 39900920
    895168 8uti:SV (3.13) BS02 rna N/A GO:0000462 ... P0CX39 39900920
    895169 8uti:SW (3.13) BS01 rna N/A GO:0000462 ... O13516 39900920
    895170 8uti:SX (3.13) BS01 rna N/A GO:0000028 ... P0CX47 39900920
    895171 8uti:SY (3.13) BS01 rna N/A GO:0000462 ... P05756 39900920
    895172 8uti:SZ (3.13) BS01 rna N/A GO:0000028 ... P06367 39900920
    895173 8uti:Sa (3.13) BS01 rna N/A GO:0000447 ... P0C0V8 39900920
    895174 8uti:Sb (3.13) BS01 rna N/A GO:0002181 ... P0C0W1 39900920
    895175 8uti:Sc (3.13) BS01 rna N/A GO:0000462 ... P0CX29 39900920
    895176 8uti:Sd (3.13) BS01 rna N/A GO:0000462 ... P0CX31 39900920
    895177 8uti:Se (3.13) BS01 rna N/A GO:0003735 ... P39938 39900920
    895178 8uti:Sf (3.13) BS01 rna N/A GO:0000028 ... P35997 39900920
    895179 8uti:Sg (3.13) BS01 rna N/A GO:0002181 ... P0CX33 39900920
    895180 8uti:z (3.13) BS01 rna N/A GO:0005737 ... Q06709 39900920
    895181 8uti:z (3.13) BS02 rna N/A GO:0005737 ... Q06709 39900920
    895182 8utj:A (3.5) BS01 rna N/A GO:0000027 ... P0A7L0 40789848
    895183 8utj:B (3.5) BS01 rna N/A GO:0000027 ... P60422 40789848
    895184 8utj:C (3.5) BS01 rna N/A GO:0000027 ... P60438 40789848
    895185 8utj:D (3.5) BS01 rna N/A GO:0001070 ... P60723 40789848
    895186 8utj:E (3.5) BS01 rna N/A GO:0000027 ... P62399 40789848
    895187 8utj:E (3.5) BS02 rna N/A GO:0000027 ... P62399 40789848
    895188 8utj:E (3.5) BS03 rna N/A GO:0000027 ... P62399 40789848
    895189 8utj:F (3.5) BS01 rna N/A GO:0000027 ... P0AG55 40789848
    895190 8utj:G (3.5) BS01 rna N/A GO:0002181 ... P0A7R1 40789848
    895191 8utj:J (3.5) BS01 rna N/A GO:0002181 ... P0AA10 40789848
    895192 8utj:K (3.5) BS01 rna N/A GO:0002181 ... P0ADY3 40789848
    895193 8utj:K (3.5) BS02 rna N/A GO:0002181 ... P0ADY3 40789848
    895194 8utj:L (3.5) BS01 rna N/A GO:0002181 ... P02413 40789848
    895195 8utj:M (3.5) BS01 rna N/A GO:0000027 ... P0ADY7 40789848
    895196 8utj:M (3.5) BS02 rna N/A GO:0000027 ... P0ADY7 40789848
    895197 8utj:N (3.5) BS01 rna N/A GO:0000027 ... P0AG44 40789848
    895198 8utj:O (3.5) BS01 rna N/A GO:0002181 ... P0C018 40789848
    895199 8utj:O (3.5) BS02 rna N/A GO:0002181 ... P0C018 40789848
    895200 8utj:P (3.5) BS01 rna N/A GO:0000027 ... P0A7K6 40789848

    Reference:
  • Chengxin Zhang, Xi Zhang, Lydia Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).