SEQ2FUN

BioLiP
Download all results in tab-seperated text for 942758 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.
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    # PDB
    (Resolution Å)
    Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    895401 8vtx:1R (2.4) BS02 MG N/A GO:0003735 ... Q9Z9H5 39039256
    895402 8vtx:1R (2.4) BS03 MG N/A GO:0003735 ... Q9Z9H5 39039256
    895403 8vtx:1R (2.4) BS04 MG N/A GO:0003735 ... Q9Z9H5 39039256
    895404 8vtx:1S (2.4) BS01 rna N/A GO:0003735 ... Q5SHQ4 39039256
    895405 8vtx:1S (2.4) BS02 rna N/A GO:0003735 ... Q5SHQ4 39039256
    895406 8vtx:1S (2.4) BS03 MG N/A GO:0003735 ... Q5SHQ4 39039256
    895407 8vtx:1S (2.4) BS04 MG N/A GO:0003735 ... Q5SHQ4 39039256
    895408 8vtx:1T (2.4) BS01 rna N/A GO:0003735 ... P60490 39039256
    895409 8vtx:1T (2.4) BS02 rna N/A GO:0003735 ... P60490 39039256
    895410 8vtx:1U (2.4) BS01 rna N/A GO:0000027 ... P60491 39039256
    895411 8vtx:1U (2.4) BS02 MG N/A GO:0000027 ... P60491 39039256
    895412 8vtx:1U (2.4) BS03 MG N/A GO:0000027 ... P60491 39039256
    895413 8vtx:1U (2.4) BS04 MG N/A GO:0000027 ... P60491 39039256
    895414 8vtx:1U (2.4) BS05 MG N/A GO:0000027 ... P60491 39039256
    895415 8vtx:1U (2.4) BS06 MG N/A GO:0000027 ... P60491 39039256
    895416 8vtx:1U (2.4) BS07 MG N/A GO:0000027 ... P60491 39039256
    895417 8vtx:1U (2.4) BS08 MG N/A GO:0000027 ... P60491 39039256
    895418 8vtx:1U (2.4) BS09 MG N/A GO:0000027 ... P60491 39039256
    895419 8vtx:1V (2.4) BS01 rna N/A GO:0003723 ... P60492 39039256
    895420 8vtx:1V (2.4) BS02 MG N/A GO:0003723 ... P60492 39039256
    895421 8vtx:1V (2.4) BS03 MG N/A GO:0003723 ... P60492 39039256
    895422 8vtx:1V (2.4) BS04 MG N/A GO:0003723 ... P60492 39039256
    895423 8vtx:1V (2.4) BS05 MG N/A GO:0003723 ... P60492 39039256
    895424 8vtx:1V (2.4) BS06 MG N/A GO:0003723 ... P60492 39039256
    895425 8vtx:1V (2.4) BS07 MG N/A GO:0003723 ... P60492 39039256
    895426 8vtx:1W (2.4) BS01 rna N/A GO:0003735 ... Q5SHP3 39039256
    895427 8vtx:1W (2.4) BS02 MG N/A GO:0003735 ... Q5SHP3 39039256
    895428 8vtx:1W (2.4) BS03 MG N/A GO:0003735 ... Q5SHP3 39039256
    895429 8vtx:1W (2.4) BS04 MG N/A GO:0003735 ... Q5SHP3 39039256
    895430 8vtx:1W (2.4) BS05 MG N/A GO:0003735 ... Q5SHP3 39039256
    895431 8vtx:1W (2.4) BS06 MG N/A GO:0003735 ... Q5SHP3 39039256
    895432 8vtx:1X (2.4) BS01 rna N/A GO:0003735 ... Q5SHP0 39039256
    895433 8vtx:1X (2.4) BS02 MG N/A GO:0003735 ... Q5SHP0 39039256
    895434 8vtx:1X (2.4) BS03 MG N/A GO:0003735 ... Q5SHP0 39039256
    895435 8vtx:1X (2.4) BS04 MG N/A GO:0003735 ... Q5SHP0 39039256
    895436 8vtx:1X (2.4) BS05 MG N/A GO:0003735 ... Q5SHP0 39039256
    895437 8vtx:1Y (2.4) BS01 rna N/A GO:0003723 ... Q5SHP9 39039256
    895438 8vtx:1Y (2.4) BS02 MG N/A GO:0003723 ... Q5SHP9 39039256
    895439 8vtx:1Y (2.4) BS03 ZN N/A GO:0003723 ... Q5SHP9 39039256
    895440 8vtx:1Z (2.4) BS01 rna N/A GO:0003723 ... Q5SHZ1 39039256
    895441 8vtx:1Z (2.4) BS02 rna N/A GO:0003723 ... Q5SHZ1 39039256
    895442 8vtx:1Z (2.4) BS03 MG N/A GO:0003723 ... Q5SHZ1 39039256
    895443 8vtx:1b (2.4) BS01 rna N/A GO:0003735 ... P80371 39039256
    895444 8vtx:1c (2.4) BS01 rna N/A GO:0003676 ... P80372 39039256
    895445 8vtx:1d (2.4) BS01 rna N/A GO:0003723 ... P80373 39039256
    895446 8vtx:1d (2.4) BS02 SF4 N/A GO:0003723 ... P80373 39039256
    895447 8vtx:1e (2.4) BS01 rna N/A GO:0003723 ... Q5SHQ5 39039256
    895448 8vtx:1e (2.4) BS02 MG N/A GO:0003723 ... Q5SHQ5 39039256
    895449 8vtx:1e (2.4) BS03 MG N/A GO:0003723 ... Q5SHQ5 39039256
    895450 8vtx:1f (2.4) BS01 rna N/A GO:0003735 ... Q5SLP8 39039256
    895451 8vtx:1f (2.4) BS02 MG N/A GO:0003735 ... Q5SLP8 39039256
    895452 8vtx:1g (2.4) BS01 rna N/A GO:0000049 ... P17291 39039256
    895453 8vtx:1g (2.4) BS02 rna N/A GO:0000049 ... P17291 39039256
    895454 8vtx:1h (2.4) BS01 rna N/A GO:0003735 ... P0DOY9 39039256
    895455 8vtx:1i (2.4) BS01 rna N/A GO:0000049 ... P80374 39039256
    895456 8vtx:1i (2.4) BS02 rna N/A GO:0000049 ... P80374 39039256
    895457 8vtx:1j (2.4) BS01 rna N/A GO:0000049 ... Q5SHN7 39039256
    895458 8vtx:1k (2.4) BS01 rna N/A GO:0003735 ... P80376 39039256
    895459 8vtx:1k (2.4) BS02 MG N/A GO:0003735 ... P80376 39039256
    895460 8vtx:1l (2.4) BS01 rna N/A GO:0000049 ... Q5SHN3 39039256
    895461 8vtx:1l (2.4) BS02 rna N/A GO:0000049 ... Q5SHN3 39039256
    895462 8vtx:1l (2.4) BS03 MG N/A GO:0000049 ... Q5SHN3 39039256
    895463 8vtx:1m (2.4) BS01 rna N/A GO:0000049 ... P80377 39039256
    895464 8vtx:1m (2.4) BS02 rna N/A GO:0000049 ... P80377 39039256
    895465 8vtx:1m (2.4) BS03 rna N/A GO:0000049 ... P80377 39039256
    895466 8vtx:1m (2.4) BS04 MG N/A GO:0000049 ... P80377 39039256
    895467 8vtx:1n (2.4) BS01 rna N/A GO:0003735 ... P0DOY6 39039256
    895468 8vtx:1n (2.4) BS02 ZN N/A GO:0003735 ... P0DOY6 39039256
    895469 8vtx:1o (2.4) BS01 rna N/A GO:0003735 ... Q5SJ76 39039256
    895470 8vtx:1o (2.4) BS02 rna N/A GO:0003735 ... Q5SJ76 39039256
    895471 8vtx:1p (2.4) BS01 rna N/A GO:0003735 ... Q5SJH3 39039256
    895472 8vtx:1q (2.4) BS01 rna N/A GO:0003735 ... P0DOY7 39039256
    895473 8vtx:1r (2.4) BS01 rna N/A GO:0003735 ... Q5SLQ0 39039256
    895474 8vtx:1s (2.4) BS01 rna N/A GO:0000028 ... Q5SHP2 39039256
    895475 8vtx:1t (2.4) BS01 rna N/A GO:0003723 ... P80380 39039256
    895476 8vtx:1t (2.4) BS02 MG N/A GO:0003723 ... P80380 39039256
    895477 8vtx:20 (2.4) BS01 rna N/A GO:0003735 ... P60493 39039256
    895478 8vtx:20 (2.4) BS02 rna N/A GO:0003735 ... P60493 39039256
    895479 8vtx:20 (2.4) BS03 rna N/A GO:0003735 ... P60493 39039256
    895480 8vtx:21 (2.4) BS01 rna N/A GO:0003735 ... P60494 39039256
    895481 8vtx:21 (2.4) BS02 rna N/A GO:0003735 ... P60494 39039256
    895482 8vtx:22 (2.4) BS01 rna N/A GO:0003735 ... Q5SHP6 39039256
    895483 8vtx:23 (2.4) BS01 rna N/A GO:0003735 ... Q5SHQ6 39039256
    895484 8vtx:23 (2.4) BS02 rna N/A GO:0003735 ... Q5SHQ6 39039256
    895485 8vtx:23 (2.4) BS03 MG N/A GO:0003735 ... Q5SHQ6 39039256
    895486 8vtx:24 (2.4) BS01 rna N/A GO:0003735 ... Q5SJE1 39039256
    895487 8vtx:24 (2.4) BS02 ZN N/A GO:0003735 ... Q5SJE1 39039256
    895488 8vtx:25 (2.4) BS01 rna N/A GO:0003735 ... P80339 39039256
    895489 8vtx:25 (2.4) BS02 ZN N/A GO:0003735 ... P80339 39039256
    895490 8vtx:26 (2.4) BS01 rna N/A GO:0000049 ... P35871 39039256
    895491 8vtx:26 (2.4) BS02 MG N/A GO:0000049 ... P35871 39039256
    895492 8vtx:26 (2.4) BS03 ZN N/A GO:0000049 ... P35871 39039256
    895493 8vtx:27 (2.4) BS01 rna N/A GO:0003735 ... P80340 39039256
    895494 8vtx:27 (2.4) BS02 MG N/A GO:0003735 ... P80340 39039256
    895495 8vtx:27 (2.4) BS03 MG N/A GO:0003735 ... P80340 39039256
    895496 8vtx:28 (2.4) BS01 rna N/A GO:0003735 ... Q5SKU1 39039256
    895497 8vtx:28 (2.4) BS02 MG N/A GO:0003735 ... Q5SKU1 39039256
    895498 8vtx:29 (2.4) BS01 rna N/A GO:0003735 ... Q5SHR2 39039256
    895499 8vtx:29 (2.4) BS02 ZN N/A GO:0003735 ... Q5SHR2 39039256
    895500 8vtx:2D (2.4) BS01 rna N/A GO:0002181 ... P60405 39039256
    895501 8vtx:2D (2.4) BS02 rna N/A GO:0002181 ... P60405 39039256
    895502 8vtx:2D (2.4) BS03 MG N/A GO:0002181 ... P60405 39039256
    895503 8vtx:2D (2.4) BS04 MG N/A GO:0002181 ... P60405 39039256
    895504 8vtx:2D (2.4) BS05 MG N/A GO:0002181 ... P60405 39039256
    895505 8vtx:2E (2.4) BS01 rna N/A GO:0003735 ... Q5SHN8 39039256
    895506 8vtx:2E (2.4) BS02 MG N/A GO:0003735 ... Q5SHN8 39039256
    895507 8vtx:2F (2.4) BS01 rna N/A GO:0003735 ... Q5SHN9 39039256
    895508 8vtx:2F (2.4) BS02 MG N/A GO:0003735 ... Q5SHN9 39039256
    895509 8vtx:2F (2.4) BS03 MG N/A GO:0003735 ... Q5SHN9 39039256
    895510 8vtx:2F (2.4) BS04 MG N/A GO:0003735 ... Q5SHN9 39039256
    895511 8vtx:2F (2.4) BS05 MG N/A GO:0003735 ... Q5SHN9 39039256
    895512 8vtx:2G (2.4) BS01 rna N/A GO:0000049 ... Q5SHQ0 39039256
    895513 8vtx:2G (2.4) BS02 rna N/A GO:0000049 ... Q5SHQ0 39039256
    895514 8vtx:2G (2.4) BS03 rna N/A GO:0000049 ... Q5SHQ0 39039256
    895515 8vtx:2G (2.4) BS04 MG N/A GO:0000049 ... Q5SHQ0 39039256
    895516 8vtx:2H (2.4) BS01 rna N/A GO:0002181 ... P0DOY8 39039256
    895517 8vtx:2I (2.4) BS01 rna N/A GO:0003735 ... Q5SLQ1 39039256
    895518 8vtx:2N (2.4) BS01 rna N/A GO:0003729 ... P60488 39039256
    895519 8vtx:2O (2.4) BS01 rna N/A GO:0003735 ... Q5SHP8 39039256
    895520 8vtx:2O (2.4) BS02 rna N/A GO:0003735 ... Q5SHP8 39039256
    895521 8vtx:2P (2.4) BS01 rna N/A GO:0003735 ... Q5SHQ7 39039256
    895522 8vtx:2Q (2.4) BS01 rna N/A GO:0000049 ... P60489 39039256
    895523 8vtx:2Q (2.4) BS02 rna N/A GO:0000049 ... P60489 39039256
    895524 8vtx:2Q (2.4) BS03 rna N/A GO:0000049 ... P60489 39039256
    895525 8vtx:2Q (2.4) BS04 rna N/A GO:0000049 ... P60489 39039256
    895526 8vtx:2Q (2.4) BS05 MG N/A GO:0000049 ... P60489 39039256
    895527 8vtx:2Q (2.4) BS06 MG N/A GO:0000049 ... P60489 39039256
    895528 8vtx:2R (2.4) BS01 rna N/A GO:0003735 ... Q9Z9H5 39039256
    895529 8vtx:2S (2.4) BS01 rna N/A GO:0003735 ... Q5SHQ4 39039256
    895530 8vtx:2S (2.4) BS02 rna N/A GO:0003735 ... Q5SHQ4 39039256
    895531 8vtx:2T (2.4) BS01 rna N/A GO:0003735 ... P60490 39039256
    895532 8vtx:2T (2.4) BS02 rna N/A GO:0003735 ... P60490 39039256
    895533 8vtx:2T (2.4) BS03 MG N/A GO:0003735 ... P60490 39039256
    895534 8vtx:2U (2.4) BS01 rna N/A GO:0000027 ... P60491 39039256
    895535 8vtx:2U (2.4) BS02 MG N/A GO:0000027 ... P60491 39039256
    895536 8vtx:2V (2.4) BS01 rna N/A GO:0003723 ... P60492 39039256
    895537 8vtx:2V (2.4) BS02 MG N/A GO:0003723 ... P60492 39039256
    895538 8vtx:2W (2.4) BS01 rna N/A GO:0003735 ... Q5SHP3 39039256
    895539 8vtx:2W (2.4) BS02 MG N/A GO:0003735 ... Q5SHP3 39039256
    895540 8vtx:2W (2.4) BS03 MG N/A GO:0003735 ... Q5SHP3 39039256
    895541 8vtx:2X (2.4) BS01 rna N/A GO:0003735 ... Q5SHP0 39039256
    895542 8vtx:2X (2.4) BS02 MG N/A GO:0003735 ... Q5SHP0 39039256
    895543 8vtx:2Y (2.4) BS01 rna N/A GO:0003723 ... Q5SHP9 39039256
    895544 8vtx:2Y (2.4) BS02 ZN N/A GO:0003723 ... Q5SHP9 39039256
    895545 8vtx:2Z (2.4) BS01 rna N/A GO:0003723 ... Q5SHZ1 39039256
    895546 8vtx:2Z (2.4) BS02 rna N/A GO:0003723 ... Q5SHZ1 39039256
    895547 8vtx:2Z (2.4) BS03 MG N/A GO:0003723 ... Q5SHZ1 39039256
    895548 8vtx:2b (2.4) BS01 rna N/A GO:0003735 ... P80371 39039256
    895549 8vtx:2c (2.4) BS01 rna N/A GO:0003676 ... P80372 39039256
    895550 8vtx:2d (2.4) BS01 rna N/A GO:0003723 ... P80373 39039256
    895551 8vtx:2d (2.4) BS02 MG N/A GO:0003723 ... P80373 39039256
    895552 8vtx:2d (2.4) BS03 SF4 N/A GO:0003723 ... P80373 39039256
    895553 8vtx:2e (2.4) BS01 rna N/A GO:0003723 ... Q5SHQ5 39039256
    895554 8vtx:2e (2.4) BS02 MG N/A GO:0003723 ... Q5SHQ5 39039256
    895555 8vtx:2f (2.4) BS01 rna N/A GO:0003735 ... Q5SLP8 39039256
    895556 8vtx:2f (2.4) BS02 MG N/A GO:0003735 ... Q5SLP8 39039256
    895557 8vtx:2g (2.4) BS01 rna N/A GO:0000049 ... P17291 39039256
    895558 8vtx:2g (2.4) BS02 rna N/A GO:0000049 ... P17291 39039256
    895559 8vtx:2h (2.4) BS01 rna N/A GO:0003735 ... P0DOY9 39039256
    895560 8vtx:2i (2.4) BS01 rna N/A GO:0000049 ... P80374 39039256
    895561 8vtx:2i (2.4) BS02 rna N/A GO:0000049 ... P80374 39039256
    895562 8vtx:2j (2.4) BS01 rna N/A GO:0000049 ... Q5SHN7 39039256
    895563 8vtx:2k (2.4) BS01 rna N/A GO:0003735 ... P80376 39039256
    895564 8vtx:2k (2.4) BS02 MG N/A GO:0003735 ... P80376 39039256
    895565 8vtx:2l (2.4) BS01 rna N/A GO:0000049 ... Q5SHN3 39039256
    895566 8vtx:2l (2.4) BS02 MG N/A GO:0000049 ... Q5SHN3 39039256
    895567 8vtx:2l (2.4) BS03 MG N/A GO:0000049 ... Q5SHN3 39039256
    895568 8vtx:2l (2.4) BS04 MG N/A GO:0000049 ... Q5SHN3 39039256
    895569 8vtx:2m (2.4) BS01 rna N/A GO:0000049 ... P80377 39039256
    895570 8vtx:2m (2.4) BS02 rna N/A GO:0000049 ... P80377 39039256
    895571 8vtx:2m (2.4) BS03 rna N/A GO:0000049 ... P80377 39039256
    895572 8vtx:2n (2.4) BS01 rna N/A GO:0003735 ... P0DOY6 39039256
    895573 8vtx:2n (2.4) BS02 ZN N/A GO:0003735 ... P0DOY6 39039256
    895574 8vtx:2o (2.4) BS01 rna N/A GO:0003735 ... Q5SJ76 39039256
    895575 8vtx:2o (2.4) BS02 rna N/A GO:0003735 ... Q5SJ76 39039256
    895576 8vtx:2p (2.4) BS01 rna N/A GO:0003735 ... Q5SJH3 39039256
    895577 8vtx:2q (2.4) BS01 rna N/A GO:0003735 ... P0DOY7 39039256
    895578 8vtx:2q (2.4) BS02 MG N/A GO:0003735 ... P0DOY7 39039256
    895579 8vtx:2q (2.4) BS03 MG N/A GO:0003735 ... P0DOY7 39039256
    895580 8vtx:2r (2.4) BS01 rna N/A GO:0003735 ... Q5SLQ0 39039256
    895581 8vtx:2r (2.4) BS02 MG N/A GO:0003735 ... Q5SLQ0 39039256
    895582 8vtx:2s (2.4) BS01 rna N/A GO:0000028 ... Q5SHP2 39039256
    895583 8vtx:2t (2.4) BS01 rna N/A GO:0003723 ... P80380 39039256
    895584 8vtx:2t (2.4) BS02 MG N/A GO:0003723 ... P80380 39039256
    895585 8vty:10 (2.6) BS01 rna N/A GO:0003735 ... P60493 39039256
    895586 8vty:10 (2.6) BS02 rna N/A GO:0003735 ... P60493 39039256
    895587 8vty:10 (2.6) BS03 MG N/A GO:0003735 ... P60493 39039256
    895588 8vty:10 (2.6) BS04 MG N/A GO:0003735 ... P60493 39039256
    895589 8vty:10 (2.6) BS05 MG N/A GO:0003735 ... P60493 39039256
    895590 8vty:11 (2.6) BS01 rna N/A GO:0003735 ... P60494 39039256
    895591 8vty:11 (2.6) BS02 MG N/A GO:0003735 ... P60494 39039256
    895592 8vty:12 (2.6) BS01 rna N/A GO:0003735 ... Q5SHP6 39039256
    895593 8vty:13 (2.6) BS01 rna N/A GO:0003735 ... Q5SHQ6 39039256
    895594 8vty:13 (2.6) BS02 rna N/A GO:0003735 ... Q5SHQ6 39039256
    895595 8vty:13 (2.6) BS03 MG N/A GO:0003735 ... Q5SHQ6 39039256
    895596 8vty:13 (2.6) BS04 MG N/A GO:0003735 ... Q5SHQ6 39039256
    895597 8vty:14 (2.6) BS01 rna N/A GO:0003735 ... Q5SJE1 39039256
    895598 8vty:14 (2.6) BS02 ZN N/A GO:0003735 ... Q5SJE1 39039256
    895599 8vty:15 (2.6) BS01 rna N/A GO:0003735 ... P80339 39039256
    895600 8vty:15 (2.6) BS02 MG N/A GO:0003735 ... P80339 39039256

    Reference:
  • Chengxin Zhang, Xi Zhang, Lydia Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).