SEQ2FUN

BioLiP
Download all results in tab-seperated text for 942758 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.
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    # PDB
    (Resolution Å)
    Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    895801 8vty:2b (2.6) BS01 rna N/A GO:0003735 ... P80371 39039256
    895802 8vty:2c (2.6) BS01 rna N/A GO:0003676 ... P80372 39039256
    895803 8vty:2d (2.6) BS01 rna N/A GO:0003723 ... P80373 39039256
    895804 8vty:2d (2.6) BS02 SF4 N/A GO:0003723 ... P80373 39039256
    895805 8vty:2e (2.6) BS01 rna N/A GO:0003723 ... Q5SHQ5 39039256
    895806 8vty:2f (2.6) BS01 rna N/A GO:0003735 ... Q5SLP8 39039256
    895807 8vty:2f (2.6) BS02 MG N/A GO:0003735 ... Q5SLP8 39039256
    895808 8vty:2f (2.6) BS03 MG N/A GO:0003735 ... Q5SLP8 39039256
    895809 8vty:2g (2.6) BS01 rna N/A GO:0000049 ... P17291 39039256
    895810 8vty:2h (2.6) BS01 rna N/A GO:0003735 ... P0DOY9 39039256
    895811 8vty:2i (2.6) BS01 rna N/A GO:0000049 ... P80374 39039256
    895812 8vty:2j (2.6) BS01 rna N/A GO:0000049 ... Q5SHN7 39039256
    895813 8vty:2j (2.6) BS02 MG N/A GO:0000049 ... Q5SHN7 39039256
    895814 8vty:2k (2.6) BS01 rna N/A GO:0003735 ... P80376 39039256
    895815 8vty:2k (2.6) BS02 MG N/A GO:0003735 ... P80376 39039256
    895816 8vty:2l (2.6) BS01 rna N/A GO:0000049 ... Q5SHN3 39039256
    895817 8vty:2l (2.6) BS02 MG N/A GO:0000049 ... Q5SHN3 39039256
    895818 8vty:2m (2.6) BS01 rna N/A GO:0000049 ... P80377 39039256
    895819 8vty:2n (2.6) BS01 rna N/A GO:0003735 ... P0DOY6 39039256
    895820 8vty:2n (2.6) BS02 ZN N/A GO:0003735 ... P0DOY6 39039256
    895821 8vty:2o (2.6) BS01 rna N/A GO:0003735 ... Q5SJ76 39039256
    895822 8vty:2o (2.6) BS02 rna N/A GO:0003735 ... Q5SJ76 39039256
    895823 8vty:2p (2.6) BS01 rna N/A GO:0003735 ... Q5SJH3 39039256
    895824 8vty:2q (2.6) BS01 rna N/A GO:0003735 ... P0DOY7 39039256
    895825 8vty:2r (2.6) BS01 rna N/A GO:0003735 ... Q5SLQ0 39039256
    895826 8vty:2s (2.6) BS01 rna N/A GO:0000028 ... Q5SHP2 39039256
    895827 8vty:2t (2.6) BS01 rna N/A GO:0003723 ... P80380 39039256
    895828 8vty:2t (2.6) BS02 MG N/A GO:0003723 ... P80380 39039256
    895829 8vty:2y (2.6) BS01 rna N/A GO:0005515 ... P0AD49 39039256
    895830 8vu0:A (2.64) BS01 rna N/A GO:0000049 ... O66738 39075051
    895831 8vu0:B (2.64) BS01 rna N/A GO:0000049 ... O66738 39075051
    895832 8vu3:A (2.27) BS01 CL0 N/A GO:0000287 ... A0A2D2Q201 N/A
    895833 8vu3:A (2.27) BS02 CLA N/A GO:0000287 ... A0A2D2Q201 N/A
    895834 8vu3:A (2.27) BS03 CLA N/A GO:0000287 ... A0A2D2Q201 N/A
    895835 8vu3:A (2.27) BS04 CLA N/A GO:0000287 ... A0A2D2Q201 N/A
    895836 8vu3:A (2.27) BS05 CLA N/A GO:0000287 ... A0A2D2Q201 N/A
    895837 8vu3:A (2.27) BS06 CLA N/A GO:0000287 ... A0A2D2Q201 N/A
    895838 8vu3:A (2.27) BS07 CLA N/A GO:0000287 ... A0A2D2Q201 N/A
    895839 8vu3:A (2.27) BS08 CLA N/A GO:0000287 ... A0A2D2Q201 N/A
    895840 8vu3:A (2.27) BS09 CLA N/A GO:0000287 ... A0A2D2Q201 N/A
    895841 8vu3:A (2.27) BS10 CLA N/A GO:0000287 ... A0A2D2Q201 N/A
    895842 8vu3:A (2.27) BS11 CLA N/A GO:0000287 ... A0A2D2Q201 N/A
    895843 8vu3:A (2.27) BS12 CLA N/A GO:0000287 ... A0A2D2Q201 N/A
    895844 8vu3:A (2.27) BS13 CLA N/A GO:0000287 ... A0A2D2Q201 N/A
    895845 8vu3:A (2.27) BS14 CLA N/A GO:0000287 ... A0A2D2Q201 N/A
    895846 8vu3:A (2.27) BS15 CLA N/A GO:0000287 ... A0A2D2Q201 N/A
    895847 8vu3:A (2.27) BS16 CLA N/A GO:0000287 ... A0A2D2Q201 N/A
    895848 8vu3:A (2.27) BS17 CLA N/A GO:0000287 ... A0A2D2Q201 N/A
    895849 8vu3:A (2.27) BS18 CLA N/A GO:0000287 ... A0A2D2Q201 N/A
    895850 8vu3:A (2.27) BS19 CLA N/A GO:0000287 ... A0A2D2Q201 N/A
    895851 8vu3:A (2.27) BS20 CLA N/A GO:0000287 ... A0A2D2Q201 N/A
    895852 8vu3:A (2.27) BS21 CLA N/A GO:0000287 ... A0A2D2Q201 N/A
    895853 8vu3:A (2.27) BS22 CLA N/A GO:0000287 ... A0A2D2Q201 N/A
    895854 8vu3:A (2.27) BS23 CLA N/A GO:0000287 ... A0A2D2Q201 N/A
    895855 8vu3:A (2.27) BS24 CLA N/A GO:0000287 ... A0A2D2Q201 N/A
    895856 8vu3:A (2.27) BS25 CLA N/A GO:0000287 ... A0A2D2Q201 N/A
    895857 8vu3:A (2.27) BS26 CLA N/A GO:0000287 ... A0A2D2Q201 N/A
    895858 8vu3:A (2.27) BS27 CLA N/A GO:0000287 ... A0A2D2Q201 N/A
    895859 8vu3:A (2.27) BS28 CLA N/A GO:0000287 ... A0A2D2Q201 N/A
    895860 8vu3:A (2.27) BS29 CLA N/A GO:0000287 ... A0A2D2Q201 N/A
    895861 8vu3:A (2.27) BS30 CLA N/A GO:0000287 ... A0A2D2Q201 N/A
    895862 8vu3:A (2.27) BS31 CLA N/A GO:0000287 ... A0A2D2Q201 N/A
    895863 8vu3:A (2.27) BS32 CLA N/A GO:0000287 ... A0A2D2Q201 N/A
    895864 8vu3:A (2.27) BS33 CLA N/A GO:0000287 ... A0A2D2Q201 N/A
    895865 8vu3:A (2.27) BS34 CLA N/A GO:0000287 ... A0A2D2Q201 N/A
    895866 8vu3:A (2.27) BS35 CLA N/A GO:0000287 ... A0A2D2Q201 N/A
    895867 8vu3:A (2.27) BS36 CLA N/A GO:0000287 ... A0A2D2Q201 N/A
    895868 8vu3:A (2.27) BS37 CLA N/A GO:0000287 ... A0A2D2Q201 N/A
    895869 8vu3:A (2.27) BS38 CLA N/A GO:0000287 ... A0A2D2Q201 N/A
    895870 8vu3:A (2.27) BS39 CLA N/A GO:0000287 ... A0A2D2Q201 N/A
    895871 8vu3:A (2.27) BS40 CLA N/A GO:0000287 ... A0A2D2Q201 N/A
    895872 8vu3:A (2.27) BS41 CLA N/A GO:0000287 ... A0A2D2Q201 N/A
    895873 8vu3:A (2.27) BS42 CLA N/A GO:0000287 ... A0A2D2Q201 N/A
    895874 8vu3:A (2.27) BS43 CLA N/A GO:0000287 ... A0A2D2Q201 N/A
    895875 8vu3:A (2.27) BS44 CLA N/A GO:0000287 ... A0A2D2Q201 N/A
    895876 8vu3:A (2.27) BS45 CLA N/A GO:0000287 ... A0A2D2Q201 N/A
    895877 8vu3:A (2.27) BS46 PQN N/A GO:0000287 ... A0A2D2Q201 N/A
    895878 8vu3:A (2.27) BS47 SF4 N/A GO:0000287 ... A0A2D2Q201 N/A
    895879 8vu3:A (2.27) BS48 CLA N/A GO:0000287 ... A0A2D2Q201 N/A
    895880 8vu3:A (2.27) BS49 CLA N/A GO:0000287 ... A0A2D2Q201 N/A
    895881 8vu3:A (2.27) BS50 CLA N/A GO:0000287 ... A0A2D2Q201 N/A
    895882 8vu3:A (2.27) BS51 CLA N/A GO:0000287 ... A0A2D2Q201 N/A
    895883 8vu3:B (2.27) BS01 peptide N/A GO:0000287 ... A0A2D2Q1Z9 N/A
    895884 8vu3:B (2.27) BS02 CL0 N/A GO:0000287 ... A0A2D2Q1Z9 N/A
    895885 8vu3:B (2.27) BS03 CLA N/A GO:0000287 ... A0A2D2Q1Z9 N/A
    895886 8vu3:B (2.27) BS04 CLA N/A GO:0000287 ... A0A2D2Q1Z9 N/A
    895887 8vu3:B (2.27) BS05 CLA N/A GO:0000287 ... A0A2D2Q1Z9 N/A
    895888 8vu3:B (2.27) BS06 CLA N/A GO:0000287 ... A0A2D2Q1Z9 N/A
    895889 8vu3:B (2.27) BS07 CLA N/A GO:0000287 ... A0A2D2Q1Z9 N/A
    895890 8vu3:B (2.27) BS08 CLA N/A GO:0000287 ... A0A2D2Q1Z9 N/A
    895891 8vu3:B (2.27) BS09 SF4 N/A GO:0000287 ... A0A2D2Q1Z9 N/A
    895892 8vu3:B (2.27) BS10 CLA N/A GO:0000287 ... A0A2D2Q1Z9 N/A
    895893 8vu3:B (2.27) BS11 CLA N/A GO:0000287 ... A0A2D2Q1Z9 N/A
    895894 8vu3:B (2.27) BS12 CLA N/A GO:0000287 ... A0A2D2Q1Z9 N/A
    895895 8vu3:B (2.27) BS13 CLA N/A GO:0000287 ... A0A2D2Q1Z9 N/A
    895896 8vu3:B (2.27) BS14 CLA N/A GO:0000287 ... A0A2D2Q1Z9 N/A
    895897 8vu3:B (2.27) BS15 CLA N/A GO:0000287 ... A0A2D2Q1Z9 N/A
    895898 8vu3:B (2.27) BS16 CLA N/A GO:0000287 ... A0A2D2Q1Z9 N/A
    895899 8vu3:B (2.27) BS17 CLA N/A GO:0000287 ... A0A2D2Q1Z9 N/A
    895900 8vu3:B (2.27) BS18 CLA N/A GO:0000287 ... A0A2D2Q1Z9 N/A
    895901 8vu3:B (2.27) BS19 CLA N/A GO:0000287 ... A0A2D2Q1Z9 N/A
    895902 8vu3:B (2.27) BS20 CLA N/A GO:0000287 ... A0A2D2Q1Z9 N/A
    895903 8vu3:B (2.27) BS21 CLA N/A GO:0000287 ... A0A2D2Q1Z9 N/A
    895904 8vu3:B (2.27) BS22 CLA N/A GO:0000287 ... A0A2D2Q1Z9 N/A
    895905 8vu3:B (2.27) BS23 CLA N/A GO:0000287 ... A0A2D2Q1Z9 N/A
    895906 8vu3:B (2.27) BS24 CLA N/A GO:0000287 ... A0A2D2Q1Z9 N/A
    895907 8vu3:B (2.27) BS25 CLA N/A GO:0000287 ... A0A2D2Q1Z9 N/A
    895908 8vu3:B (2.27) BS26 CLA N/A GO:0000287 ... A0A2D2Q1Z9 N/A
    895909 8vu3:B (2.27) BS27 CLA N/A GO:0000287 ... A0A2D2Q1Z9 N/A
    895910 8vu3:B (2.27) BS28 CLA N/A GO:0000287 ... A0A2D2Q1Z9 N/A
    895911 8vu3:B (2.27) BS29 CLA N/A GO:0000287 ... A0A2D2Q1Z9 N/A
    895912 8vu3:B (2.27) BS30 CLA N/A GO:0000287 ... A0A2D2Q1Z9 N/A
    895913 8vu3:B (2.27) BS31 CLA N/A GO:0000287 ... A0A2D2Q1Z9 N/A
    895914 8vu3:B (2.27) BS32 CLA N/A GO:0000287 ... A0A2D2Q1Z9 N/A
    895915 8vu3:B (2.27) BS33 CLA N/A GO:0000287 ... A0A2D2Q1Z9 N/A
    895916 8vu3:B (2.27) BS34 CLA N/A GO:0000287 ... A0A2D2Q1Z9 N/A
    895917 8vu3:B (2.27) BS35 CLA N/A GO:0000287 ... A0A2D2Q1Z9 N/A
    895918 8vu3:B (2.27) BS36 CLA N/A GO:0000287 ... A0A2D2Q1Z9 N/A
    895919 8vu3:B (2.27) BS37 CLA N/A GO:0000287 ... A0A2D2Q1Z9 N/A
    895920 8vu3:B (2.27) BS38 CLA N/A GO:0000287 ... A0A2D2Q1Z9 N/A
    895921 8vu3:B (2.27) BS39 CLA N/A GO:0000287 ... A0A2D2Q1Z9 N/A
    895922 8vu3:B (2.27) BS40 CLA N/A GO:0000287 ... A0A2D2Q1Z9 N/A
    895923 8vu3:B (2.27) BS41 CLA N/A GO:0000287 ... A0A2D2Q1Z9 N/A
    895924 8vu3:B (2.27) BS42 CLA N/A GO:0000287 ... A0A2D2Q1Z9 N/A
    895925 8vu3:B (2.27) BS43 CLA N/A GO:0000287 ... A0A2D2Q1Z9 N/A
    895926 8vu3:B (2.27) BS44 CLA N/A GO:0000287 ... A0A2D2Q1Z9 N/A
    895927 8vu3:B (2.27) BS45 CLA N/A GO:0000287 ... A0A2D2Q1Z9 N/A
    895928 8vu3:B (2.27) BS46 CLA N/A GO:0000287 ... A0A2D2Q1Z9 N/A
    895929 8vu3:B (2.27) BS47 CLA N/A GO:0000287 ... A0A2D2Q1Z9 N/A
    895930 8vu3:B (2.27) BS48 CLA N/A GO:0000287 ... A0A2D2Q1Z9 N/A
    895931 8vu3:B (2.27) BS49 CLA N/A GO:0000287 ... A0A2D2Q1Z9 N/A
    895932 8vu3:B (2.27) BS50 PQN N/A GO:0000287 ... A0A2D2Q1Z9 N/A
    895933 8vu3:C (2.27) BS01 SF4 N/A GO:0009055 ... A0A2D2Q1F9 N/A
    895934 8vu3:C (2.27) BS02 SF4 N/A GO:0009055 ... A0A2D2Q1F9 N/A
    895935 8vu3:F (2.27) BS01 peptide N/A N/A A0A2D2PYV7 N/A
    895936 8vu3:F (2.27) BS02 CLA N/A N/A A0A2D2PYV7 N/A
    895937 8vu3:F (2.27) BS03 CLA N/A N/A A0A2D2PYV7 N/A
    895938 8vu3:F (2.27) BS04 CLA N/A N/A A0A2D2PYV7 N/A
    895939 8vu3:F (2.27) BS05 CLA N/A N/A A0A2D2PYV7 N/A
    895940 8vu3:F (2.27) BS06 CLA N/A N/A A0A2D2PYV7 N/A
    895941 8vu3:G (2.27) BS01 CL0 N/A GO:0000287 ... A0A2D2Q201 N/A
    895942 8vu3:G (2.27) BS02 CLA N/A GO:0000287 ... A0A2D2Q201 N/A
    895943 8vu3:G (2.27) BS03 CLA N/A GO:0000287 ... A0A2D2Q201 N/A
    895944 8vu3:G (2.27) BS04 CLA N/A GO:0000287 ... A0A2D2Q201 N/A
    895945 8vu3:G (2.27) BS05 CLA N/A GO:0000287 ... A0A2D2Q201 N/A
    895946 8vu3:G (2.27) BS06 CLA N/A GO:0000287 ... A0A2D2Q201 N/A
    895947 8vu3:G (2.27) BS07 CLA N/A GO:0000287 ... A0A2D2Q201 N/A
    895948 8vu3:G (2.27) BS08 CLA N/A GO:0000287 ... A0A2D2Q201 N/A
    895949 8vu3:G (2.27) BS09 CLA N/A GO:0000287 ... A0A2D2Q201 N/A
    895950 8vu3:G (2.27) BS10 CLA N/A GO:0000287 ... A0A2D2Q201 N/A
    895951 8vu3:G (2.27) BS11 CLA N/A GO:0000287 ... A0A2D2Q201 N/A
    895952 8vu3:G (2.27) BS12 CLA N/A GO:0000287 ... A0A2D2Q201 N/A
    895953 8vu3:G (2.27) BS13 CLA N/A GO:0000287 ... A0A2D2Q201 N/A
    895954 8vu3:G (2.27) BS14 CLA N/A GO:0000287 ... A0A2D2Q201 N/A
    895955 8vu3:G (2.27) BS15 CLA N/A GO:0000287 ... A0A2D2Q201 N/A
    895956 8vu3:G (2.27) BS16 CLA N/A GO:0000287 ... A0A2D2Q201 N/A
    895957 8vu3:G (2.27) BS17 CLA N/A GO:0000287 ... A0A2D2Q201 N/A
    895958 8vu3:G (2.27) BS18 CLA N/A GO:0000287 ... A0A2D2Q201 N/A
    895959 8vu3:G (2.27) BS19 CLA N/A GO:0000287 ... A0A2D2Q201 N/A
    895960 8vu3:G (2.27) BS20 CLA N/A GO:0000287 ... A0A2D2Q201 N/A
    895961 8vu3:G (2.27) BS21 CLA N/A GO:0000287 ... A0A2D2Q201 N/A
    895962 8vu3:G (2.27) BS22 CLA N/A GO:0000287 ... A0A2D2Q201 N/A
    895963 8vu3:G (2.27) BS23 CLA N/A GO:0000287 ... A0A2D2Q201 N/A
    895964 8vu3:G (2.27) BS24 CLA N/A GO:0000287 ... A0A2D2Q201 N/A
    895965 8vu3:G (2.27) BS25 CLA N/A GO:0000287 ... A0A2D2Q201 N/A
    895966 8vu3:G (2.27) BS26 CLA N/A GO:0000287 ... A0A2D2Q201 N/A
    895967 8vu3:G (2.27) BS27 CLA N/A GO:0000287 ... A0A2D2Q201 N/A
    895968 8vu3:G (2.27) BS28 CLA N/A GO:0000287 ... A0A2D2Q201 N/A
    895969 8vu3:G (2.27) BS29 CLA N/A GO:0000287 ... A0A2D2Q201 N/A
    895970 8vu3:G (2.27) BS30 CLA N/A GO:0000287 ... A0A2D2Q201 N/A
    895971 8vu3:G (2.27) BS31 CLA N/A GO:0000287 ... A0A2D2Q201 N/A
    895972 8vu3:G (2.27) BS32 CLA N/A GO:0000287 ... A0A2D2Q201 N/A
    895973 8vu3:G (2.27) BS33 CLA N/A GO:0000287 ... A0A2D2Q201 N/A
    895974 8vu3:G (2.27) BS34 CLA N/A GO:0000287 ... A0A2D2Q201 N/A
    895975 8vu3:G (2.27) BS35 CLA N/A GO:0000287 ... A0A2D2Q201 N/A
    895976 8vu3:G (2.27) BS36 CLA N/A GO:0000287 ... A0A2D2Q201 N/A
    895977 8vu3:G (2.27) BS37 CLA N/A GO:0000287 ... A0A2D2Q201 N/A
    895978 8vu3:G (2.27) BS38 CLA N/A GO:0000287 ... A0A2D2Q201 N/A
    895979 8vu3:G (2.27) BS39 CLA N/A GO:0000287 ... A0A2D2Q201 N/A
    895980 8vu3:G (2.27) BS40 CLA N/A GO:0000287 ... A0A2D2Q201 N/A
    895981 8vu3:G (2.27) BS41 CLA N/A GO:0000287 ... A0A2D2Q201 N/A
    895982 8vu3:G (2.27) BS42 CLA N/A GO:0000287 ... A0A2D2Q201 N/A
    895983 8vu3:G (2.27) BS43 CLA N/A GO:0000287 ... A0A2D2Q201 N/A
    895984 8vu3:G (2.27) BS44 CLA N/A GO:0000287 ... A0A2D2Q201 N/A
    895985 8vu3:G (2.27) BS45 PQN N/A GO:0000287 ... A0A2D2Q201 N/A
    895986 8vu3:G (2.27) BS46 SF4 N/A GO:0000287 ... A0A2D2Q201 N/A
    895987 8vu3:G (2.27) BS47 CLA N/A GO:0000287 ... A0A2D2Q201 N/A
    895988 8vu3:G (2.27) BS48 CLA N/A GO:0000287 ... A0A2D2Q201 N/A
    895989 8vu3:G (2.27) BS49 CLA N/A GO:0000287 ... A0A2D2Q201 N/A
    895990 8vu3:G (2.27) BS50 CLA N/A GO:0000287 ... A0A2D2Q201 N/A
    895991 8vu3:G (2.27) BS51 CLA N/A GO:0000287 ... A0A2D2Q201 N/A
    895992 8vu3:G (2.27) BS52 CLA N/A GO:0000287 ... A0A2D2Q201 N/A
    895993 8vu3:H (2.27) BS01 peptide N/A GO:0000287 ... A0A2D2Q1Z9 N/A
    895994 8vu3:H (2.27) BS02 CL0 N/A GO:0000287 ... A0A2D2Q1Z9 N/A
    895995 8vu3:H (2.27) BS03 CLA N/A GO:0000287 ... A0A2D2Q1Z9 N/A
    895996 8vu3:H (2.27) BS04 CLA N/A GO:0000287 ... A0A2D2Q1Z9 N/A
    895997 8vu3:H (2.27) BS05 CLA N/A GO:0000287 ... A0A2D2Q1Z9 N/A
    895998 8vu3:H (2.27) BS06 CLA N/A GO:0000287 ... A0A2D2Q1Z9 N/A
    895999 8vu3:H (2.27) BS07 CLA N/A GO:0000287 ... A0A2D2Q1Z9 N/A
    896000 8vu3:H (2.27) BS08 CLA N/A GO:0000287 ... A0A2D2Q1Z9 N/A

    Reference:
  • Chengxin Zhang, Xi Zhang, Lydia Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).