SEQ2FUN

BioLiP
Download all results in tab-seperated text for 942758 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
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  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.
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    # PDB
    (Resolution Å)
    Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    896401 8vwu:E (3.0) BS01 dna N/A GO:0000786 ... Q71DI3 39715760
    896402 8vwu:E (3.0) BS02 dna N/A GO:0000786 ... Q71DI3 39715760
    896403 8vwu:F (3.0) BS01 dna N/A GO:0000781 ... P62805 39715760
    896404 8vwu:F (3.0) BS02 dna N/A GO:0000781 ... P62805 39715760
    896405 8vwu:G (3.0) BS01 dna N/A GO:0000786 ... P0C0S8 39715760
    896406 8vwu:G (3.0) BS02 dna N/A GO:0000786 ... P0C0S8 39715760
    896407 8vwu:H (3.0) BS01 dna N/A GO:0000786 ... P62807 39715760
    896408 8vwu:H (3.0) BS02 dna N/A GO:0000786 ... P62807 39715760
    896409 8vwv:A (3.6) BS01 dna N/A GO:0000786 ... Q71DI3 39715760
    896410 8vwv:A (3.6) BS02 dna N/A GO:0000786 ... Q71DI3 39715760
    896411 8vwv:B (3.6) BS01 dna N/A GO:0000781 ... P62805 39715760
    896412 8vwv:B (3.6) BS02 dna N/A GO:0000781 ... P62805 39715760
    896413 8vwv:C (3.6) BS01 dna N/A GO:0000786 ... P0C0S8 39715760
    896414 8vwv:C (3.6) BS02 dna N/A GO:0000786 ... P0C0S8 39715760
    896415 8vwv:D (3.6) BS01 dna N/A GO:0000786 ... P62807 39715760
    896416 8vwv:E (3.6) BS01 dna N/A GO:0000786 ... Q71DI3 39715760
    896417 8vwv:E (3.6) BS02 dna N/A GO:0000786 ... Q71DI3 39715760
    896418 8vwv:F (3.6) BS01 dna N/A GO:0000781 ... P62805 39715760
    896419 8vwv:F (3.6) BS02 dna N/A GO:0000781 ... P62805 39715760
    896420 8vwv:G (3.6) BS01 dna N/A GO:0000786 ... P0C0S8 39715760
    896421 8vwv:G (3.6) BS02 dna N/A GO:0000786 ... P0C0S8 39715760
    896422 8vwv:H (3.6) BS01 dna N/A GO:0000786 ... P62807 39715760
    896423 8vwv:K (3.6) BS01 dna N/A GO:0000978 ... O15527 39715760
    896424 8vwv:K (3.6) BS02 dna N/A GO:0000978 ... O15527 39715760
    896425 8vwy:E (2.78) BS01 CA N/A N/A Q9ESN4 N/A
    896426 8vwy:E (2.78) BS02 CA N/A N/A Q9ESN4 N/A
    896427 8vwy:H (2.78) BS01 CA N/A N/A Q9ESN4 N/A
    896428 8vwy:H (2.78) BS02 CA N/A N/A Q9ESN4 N/A
    896429 8vwy:I (2.78) BS01 CA N/A N/A Q9ESN4 N/A
    896430 8vwy:I (2.78) BS02 CA N/A N/A Q9ESN4 N/A
    896431 8vwz:A (2.33) BS01 F3Q N/A GO:0005515 ... P0AEX9
    P10415
    Q07817
    N/A
    896432 8vx0:A (3.05) BS01 LSN 1.14.14.1
    1.14.14.51
    1.14.14.52
    1.14.14.53
    GO:0004497 ... P11712 38852293
    896433 8vx0:A (3.05) BS02 LSN 1.14.14.1
    1.14.14.51
    1.14.14.52
    1.14.14.53
    GO:0004497 ... P11712 38852293
    896434 8vx0:A (3.05) BS03 HEM 1.14.14.1
    1.14.14.51
    1.14.14.52
    1.14.14.53
    GO:0004497 ... P11712 38852293
    896435 8vx4:A (3.7) BS01 dna N/A GO:0000978 ... O15527 39341999
    896436 8vx4:A (3.7) BS02 dna N/A GO:0000978 ... O15527 39341999
    896437 8vx5:A (3.3) BS01 dna N/A GO:0000786 ... P84233 39341999
    896438 8vx5:A (3.3) BS02 dna N/A GO:0000786 ... P84233 39341999
    896439 8vx5:B (3.3) BS01 dna N/A GO:0000786 ... P62799 39341999
    896440 8vx5:B (3.3) BS02 dna N/A GO:0000786 ... P62799 39341999
    896441 8vx5:C (3.3) BS01 dna N/A GO:0000786 ... P06897 39341999
    896442 8vx5:C (3.3) BS02 dna N/A GO:0000786 ... P06897 39341999
    896443 8vx5:D (3.3) BS01 dna N/A GO:0000786 ... P02281 39341999
    896444 8vx5:D (3.3) BS02 dna N/A GO:0000786 ... P02281 39341999
    896445 8vx5:E (3.3) BS01 dna N/A GO:0000786 ... P84233 39341999
    896446 8vx5:E (3.3) BS02 dna N/A GO:0000786 ... P84233 39341999
    896447 8vx5:F (3.3) BS01 dna N/A GO:0000786 ... P62799 39341999
    896448 8vx5:F (3.3) BS02 dna N/A GO:0000786 ... P62799 39341999
    896449 8vx5:G (3.3) BS01 dna N/A GO:0000786 ... P06897 39341999
    896450 8vx5:G (3.3) BS02 dna N/A GO:0000786 ... P06897 39341999
    896451 8vx5:H (3.3) BS01 dna N/A GO:0000786 ... P02281 39341999
    896452 8vx5:H (3.3) BS02 dna N/A GO:0000786 ... P02281 39341999
    896453 8vx6:A (3.2) BS01 dna N/A GO:0000786 ... P84233 39341999
    896454 8vx6:A (3.2) BS02 dna N/A GO:0000786 ... P84233 39341999
    896455 8vx6:B (3.2) BS01 dna N/A GO:0000786 ... P62799 39341999
    896456 8vx6:B (3.2) BS02 dna N/A GO:0000786 ... P62799 39341999
    896457 8vx6:C (3.2) BS01 dna N/A GO:0000786 ... P06897 39341999
    896458 8vx6:C (3.2) BS02 dna N/A GO:0000786 ... P06897 39341999
    896459 8vx6:D (3.2) BS01 dna N/A GO:0000786 ... P02281 39341999
    896460 8vx6:D (3.2) BS02 dna N/A GO:0000786 ... P02281 39341999
    896461 8vx6:E (3.2) BS01 dna N/A GO:0000786 ... P84233 39341999
    896462 8vx6:E (3.2) BS02 dna N/A GO:0000786 ... P84233 39341999
    896463 8vx6:F (3.2) BS01 dna N/A GO:0000786 ... P62799 39341999
    896464 8vx6:F (3.2) BS02 dna N/A GO:0000786 ... P62799 39341999
    896465 8vx6:G (3.2) BS01 dna N/A GO:0000786 ... P06897 39341999
    896466 8vx6:G (3.2) BS02 dna N/A GO:0000786 ... P06897 39341999
    896467 8vx6:H (3.2) BS01 dna N/A GO:0000786 ... P02281 39341999
    896468 8vx6:H (3.2) BS02 dna N/A GO:0000786 ... P02281 39341999
    896469 8vx6:K (3.2) BS01 dna N/A GO:0000978 ... O15527 39341999
    896470 8vx7:A (2.75) BS01 peptide N/A N/A N/A N/A
    896471 8vx7:B (2.75) BS01 peptide N/A N/A N/A N/A
    896472 8vxa:A (2.79) BS01 dna ? GO:0003676 ... A0A426EXV0 38464307
    896473 8vxa:A (2.79) BS02 dna ? GO:0003676 ... A0A426EXV0 38464307
    896474 8vxb:A (1.85) BS01 5I0 N/A GO:0016740 ... A0A825BAZ6 39246239
    896475 8vxc:A (2.93) BS01 dna ? GO:0003676 ... A0A426EXV0 38464307
    896476 8vxc:A (2.93) BS02 dna ? GO:0003676 ... A0A426EXV0 38464307
    896477 8vxd:A (2.47) BS01 A1AD7 2.7.11.1
    2.7.11.26
    GO:0004672 ... P48730 38628796
    896478 8vxd:B (2.47) BS01 A1AD7 2.7.11.1
    2.7.11.26
    GO:0004672 ... P48730 38628796
    896479 8vxe:A (1.85) BS01 A1AD9 2.7.11.24 GO:0000077 ... Q16539 38628796
    896480 8vxe:A (1.85) BS02 A1AD9 2.7.11.24 GO:0000077 ... Q16539 38628796
    896481 8vxf:A (2.28) BS01 A1AD8 2.7.11.1
    2.7.11.26
    GO:0004672 ... P48730 38628796
    896482 8vxf:B (2.28) BS01 A1AD8 2.7.11.1
    2.7.11.26
    GO:0004672 ... P48730 38628796
    896483 8vxk:A (1.85) BS01 PO4 N/A N/A P94426 39720892
    896484 8vxl:A (2.24) BS01 A1AEJ N/A N/A P94426 39720892
    896485 8vxl:B (2.24) BS01 A1AEJ N/A N/A P94426 39720892
    896486 8vxl:B (2.24) BS02 PO4 N/A N/A P94426 39720892
    896487 8vxm:A (2.1) BS01 F3Q N/A GO:0005515 ... P0AEX9
    P10415
    Q07817
    N/A
    896488 8vxt:A (4.25) BS01 AGS N/A N/A Q9D5T0 39605435
    896489 8vxt:B (4.25) BS01 AGS N/A N/A Q9D5T0 39605435
    896490 8vxt:C (4.25) BS01 AGS N/A N/A Q9D5T0 39605435
    896491 8vxt:D (4.25) BS01 AGS N/A N/A Q9D5T0 39605435
    896492 8vxt:E (4.25) BS01 AGS N/A N/A Q9D5T0 39605435
    896493 8vxt:F (4.25) BS01 AGS N/A N/A Q9D5T0 39605435
    896494 8vxu:A (2.29) BS01 16A ? GO:0005886 ... U2EQ00 38865266
    896495 8vxu:B (2.29) BS01 16A ? GO:0005886 ... U2EQ00 38865266
    896496 8vxu:C (2.29) BS01 16A ? GO:0005886 ... U2EQ00 38865266
    896497 8vxu:C (2.29) BS02 16A ? GO:0005886 ... U2EQ00 38865266
    896498 8vxu:D (2.29) BS01 16A ? GO:0005886 ... U2EQ00 38865266
    896499 8vxu:E (2.29) BS01 16A N/A N/A N/A 38865266
    896500 8vxy:B (3.19) BS01 dna ? GO:0003676 ... A0A426EXV0 38464307
    896501 8vxy:B (3.19) BS02 dna ? GO:0003676 ... A0A426EXV0 38464307
    896502 8vxy:B (3.19) BS03 ATP ? GO:0003676 ... A0A426EXV0 38464307
    896503 8vy3:B (2.98) BS01 SF4 N/A GO:0006269 ... P49643 39231985
    896504 8vy3:C (2.98) BS01 ZN N/A GO:0000166 ... P09884 39231985
    896505 8vy3:C (2.98) BS02 ZN N/A GO:0000166 ... P09884 39231985
    896506 8vy4:A (1.7) BS01 peptide N/A N/A N/A 38962811
    896507 8vy4:B (1.7) BS01 peptide N/A N/A N/A 38962811
    896508 8vy7:R (2.68) BS01 A1AEI ? GO:0001580 ... Q9NYV8 38600377
    896509 8vy7:R (2.68) BS02 CLR ? GO:0001580 ... Q9NYV8 38600377
    896510 8vy8:A (2.4) BS01 peptide ? GO:0005515 ... P60615 38347541
    896511 8vy8:B (2.4) BS01 peptide ? GO:0005515 ... P60615 38347541
    896512 8vy8:E (2.4) BS01 peptide ? GO:0005515 ... P60615 38347541
    896513 8vy8:E (2.4) BS02 peptide ? GO:0005515 ... P60615 38347541
    896514 8vy8:G (2.4) BS01 peptide ? GO:0005515 ... P60615 38347541
    896515 8vy8:G (2.4) BS02 peptide ? GO:0005515 ... P60615 38347541
    896516 8vy9:R (2.88) BS01 A1AEI ? GO:0001580 ... Q9NYV8 38600377
    896517 8vy9:R (2.88) BS02 CLR ? GO:0001580 ... Q9NYV8 38600377
    896518 8vya:A (2.12) BS01 peptide N/A N/A P0DTC2 N/A
    896519 8vya:C (2.12) BS01 peptide N/A N/A P0DTC2 N/A
    896520 8vyj:A (3.6) BS01 Y01 N/A N/A Q14524 N/A
    896521 8vyj:A (3.6) BS02 Y01 N/A N/A Q14524 N/A
    896522 8vyj:A (3.6) BS03 Y01 N/A N/A Q14524 N/A
    896523 8vyj:A (3.6) BS04 Y01 N/A N/A Q14524 N/A
    896524 8vyk:A (3.9) BS01 Y01 N/A N/A Q14524 N/A
    896525 8vyk:A (3.9) BS02 Y01 N/A N/A Q14524 N/A
    896526 8vyk:A (3.9) BS03 Y01 N/A N/A Q14524 N/A
    896527 8vyk:A (3.9) BS04 Y01 N/A N/A Q14524 N/A
    896528 8vyk:A (3.9) BS05 Y01 N/A N/A Q14524 N/A
    896529 8vyk:A (3.9) BS06 Y01 N/A N/A Q14524 N/A
    896530 8vyl:A (2.02) BS01 HEM N/A GO:0004601 ... P69905 38880764
    896531 8vyl:B (2.02) BS01 HEM N/A GO:0004601 ... P68871 38880764
    896532 8vyl:C (2.02) BS01 HEM N/A GO:0004601 ... P69905 38880764
    896533 8vyl:D (2.02) BS01 HEM N/A GO:0004601 ... P68871 38880764
    896534 8vyt:A (1.61) BS01 A1AHV ? N/A P03372 38830107
    896535 8vyt:B (1.61) BS01 A1AHV ? N/A P03372 38830107
    896536 8vyt:C (1.61) BS01 A1AHV ? N/A P03372 38830107
    896537 8vyt:D (1.61) BS01 A1AHV ? N/A P03372 38830107
    896538 8vyx:A (1.69) BS01 A1AHU ? N/A P03372 38830107
    896539 8vyx:B (1.69) BS01 A1AHU ? N/A P03372 38830107
    896540 8vyx:C (1.69) BS01 A1AHU ? N/A P03372 38830107
    896541 8vyx:D (1.69) BS01 A1AHU ? N/A P03372 38830107
    896542 8vz0:A (1.86) BS01 A1AHO ? N/A P03372 38830107
    896543 8vz0:B (1.86) BS01 A1AHO ? N/A P03372 38830107
    896544 8vz0:C (1.86) BS01 A1AHO ? N/A P03372 38830107
    896545 8vz0:D (1.86) BS01 A1AHO ? N/A P03372 38830107
    896546 8vz1:A (1.82) BS01 A1AHS ? N/A P03372 38830107
    896547 8vz1:B (1.82) BS01 A1AHS ? N/A P03372 38830107
    896548 8vz1:C (1.82) BS01 A1AHS ? N/A P03372 38830107
    896549 8vz1:D (1.82) BS01 A1AHS ? N/A P03372 38830107
    896550 8vz4:A (1.25) BS01 NAP 1.5.1.3 GO:0004146 ... P0ABQ4 N/A
    896551 8vz4:B (1.25) BS01 NAP 1.5.1.3 GO:0004146 ... P0ABQ4 N/A
    896552 8vz6:A (3.56) BS01 rna N/A N/A N/A N/A
    896553 8vz6:A (3.56) BS02 rna N/A N/A N/A N/A
    896554 8vz6:B (3.56) BS01 rna N/A N/A N/A N/A
    896555 8vz6:B (3.56) BS02 rna N/A N/A N/A N/A
    896556 8vz7:A (2.53) BS01 HEM 1.14.14.1
    1.14.14.51
    1.14.14.52
    1.14.14.53
    GO:0004497 ... P11712 38852293
    896557 8vz7:A (2.53) BS02 LSN 1.14.14.1
    1.14.14.51
    1.14.14.52
    1.14.14.53
    GO:0004497 ... P11712 38852293
    896558 8vz7:A (2.53) BS03 LSN 1.14.14.1
    1.14.14.51
    1.14.14.52
    1.14.14.53
    GO:0004497 ... P11712 38852293
    896559 8vz7:A (2.53) BS04 FRU 1.14.14.1
    1.14.14.51
    1.14.14.52
    1.14.14.53
    GO:0004497 ... P11712 38852293
    896560 8vz8:A (3.45) BS01 2LJ ? N/A Q8HWB0 38537698
    896561 8vz9:A (3.4) BS01 2LJ ? N/A Q8HWB0 38537698
    896562 8vza:A (2.05) BS01 8FL N/A GO:0000166 ... A0A3C0TX30 39034323
    896563 8vza:A (2.05) BS02 UQ3 N/A GO:0000166 ... A0A3C0TX30 39034323
    896564 8vza:A (2.05) BS03 ADP N/A GO:0000166 ... A0A3C0TX30 39034323
    896565 8vza:A (2.05) BS04 MG N/A GO:0000166 ... A0A3C0TX30 39034323
    896566 8vza:A (2.05) BS05 8FL N/A GO:0000166 ... A0A3C0TX30 39034323
    896567 8vza:A (2.05) BS06 UQ3 N/A GO:0000166 ... A0A3C0TX30 39034323
    896568 8vza:B (2.05) BS01 8FL N/A GO:0000166 ... A0A3C0TX30 39034323
    896569 8vza:B (2.05) BS02 UQ3 N/A GO:0000166 ... A0A3C0TX30 39034323
    896570 8vza:B (2.05) BS03 8FL N/A GO:0000166 ... A0A3C0TX30 39034323
    896571 8vza:B (2.05) BS04 UQ3 N/A GO:0000166 ... A0A3C0TX30 39034323
    896572 8vza:B (2.05) BS05 ADP N/A GO:0000166 ... A0A3C0TX30 39034323
    896573 8vza:B (2.05) BS06 MG N/A GO:0000166 ... A0A3C0TX30 39034323
    896574 8vza:C (2.05) BS01 8FL N/A GO:0000166 ... A0A3C0TX30 39034323
    896575 8vza:C (2.05) BS02 UQ3 N/A GO:0000166 ... A0A3C0TX30 39034323
    896576 8vza:C (2.05) BS03 ADP N/A GO:0000166 ... A0A3C0TX30 39034323
    896577 8vza:C (2.05) BS04 MG N/A GO:0000166 ... A0A3C0TX30 39034323
    896578 8vza:C (2.05) BS05 8FL N/A GO:0000166 ... A0A3C0TX30 39034323
    896579 8vza:C (2.05) BS06 UQ3 N/A GO:0000166 ... A0A3C0TX30 39034323
    896580 8vza:D (2.05) BS01 8FL N/A GO:0000166 ... A0A3C0TX30 39034323
    896581 8vza:D (2.05) BS02 UQ3 N/A GO:0000166 ... A0A3C0TX30 39034323
    896582 8vza:D (2.05) BS03 8FL N/A GO:0000166 ... A0A3C0TX30 39034323
    896583 8vza:D (2.05) BS04 UQ3 N/A GO:0000166 ... A0A3C0TX30 39034323
    896584 8vza:D (2.05) BS05 ADP N/A GO:0000166 ... A0A3C0TX30 39034323
    896585 8vza:D (2.05) BS06 MG N/A GO:0000166 ... A0A3C0TX30 39034323
    896586 8vzb:A (1.98) BS01 MG N/A GO:0000166 ... A0A3C0TX30 39034323
    896587 8vzb:A (1.98) BS02 8FL N/A GO:0000166 ... A0A3C0TX30 39034323
    896588 8vzb:A (1.98) BS03 UQ3 N/A GO:0000166 ... A0A3C0TX30 39034323
    896589 8vzb:A (1.98) BS04 ADP N/A GO:0000166 ... A0A3C0TX30 39034323
    896590 8vzb:A (1.98) BS05 PO4 N/A GO:0000166 ... A0A3C0TX30 39034323
    896591 8vzb:A (1.98) BS06 8FL N/A GO:0000166 ... A0A3C0TX30 39034323
    896592 8vzb:B (1.98) BS01 8FL N/A GO:0000166 ... A0A3C0TX30 39034323
    896593 8vzb:B (1.98) BS02 MG N/A GO:0000166 ... A0A3C0TX30 39034323
    896594 8vzb:B (1.98) BS03 8FL N/A GO:0000166 ... A0A3C0TX30 39034323
    896595 8vzb:B (1.98) BS04 UQ3 N/A GO:0000166 ... A0A3C0TX30 39034323
    896596 8vzb:B (1.98) BS05 ADP N/A GO:0000166 ... A0A3C0TX30 39034323
    896597 8vzb:B (1.98) BS06 PO4 N/A GO:0000166 ... A0A3C0TX30 39034323
    896598 8vzb:C (1.98) BS01 MG N/A GO:0000166 ... A0A3C0TX30 39034323
    896599 8vzb:C (1.98) BS02 8FL N/A GO:0000166 ... A0A3C0TX30 39034323
    896600 8vzb:C (1.98) BS03 UQ3 N/A GO:0000166 ... A0A3C0TX30 39034323

    Reference:
  • Chengxin Zhang, Xi Zhang, Lydia Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).