SEQ2FUN

BioLiP
Download all results in tab-seperated text for 942758 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.
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    # PDB
    (Resolution Å)
    Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    897401 8w30:B (2.45) BS02 CA N/A N/A P05556 38872300
    897402 8w30:B (2.45) BS03 A1AFA N/A N/A P05556 38872300
    897403 8w31:A (2.5) BS01 ZN N/A GO:0004842 ... Q9JK66 39300082
    897404 8w31:A (2.5) BS02 ZN N/A GO:0004842 ... Q9JK66 39300082
    897405 8w31:A (2.5) BS03 ZN N/A GO:0004842 ... Q9JK66 39300082
    897406 8w31:A (2.5) BS04 ZN N/A GO:0004842 ... Q9JK66 39300082
    897407 8w31:A (2.5) BS05 ZN N/A GO:0004842 ... Q9JK66 39300082
    897408 8w31:A (2.5) BS06 ZN N/A GO:0004842 ... Q9JK66 39300082
    897409 8w31:A (2.5) BS07 A1AE9 N/A GO:0004842 ... Q9JK66 39300082
    897410 8w31:C (2.5) BS01 A1AE9 N/A N/A P0CG47 39300082
    897411 8w34:A (2.83) BS01 dna ? GO:0003676 ... P12497 38582148
    897412 8w34:A (2.83) BS02 dna ? GO:0003676 ... P12497 38582148
    897413 8w34:A (2.83) BS03 dna ? GO:0003676 ... P12497 38582148
    897414 8w34:A (2.83) BS04 ZN ? GO:0003676 ... P12497 38582148
    897415 8w34:A (2.83) BS05 DLU ? GO:0003676 ... P12497 38582148
    897416 8w34:A (2.83) BS06 MG ? GO:0003676 ... P12497 38582148
    897417 8w34:A (2.83) BS07 MG ? GO:0003676 ... P12497 38582148
    897418 8w34:C (2.83) BS01 dna ? GO:0003676 ... P12497 38582148
    897419 8w34:D (2.83) BS01 dna ? GO:0003676 ... P12497 38582148
    897420 8w34:D (2.83) BS02 dna ? GO:0003676 ... P12497 38582148
    897421 8w34:I (2.83) BS01 dna ? GO:0003676 ... P12497 38582148
    897422 8w34:I (2.83) BS02 dna ? GO:0003676 ... P12497 38582148
    897423 8w34:I (2.83) BS03 dna ? GO:0003676 ... P12497 38582148
    897424 8w34:I (2.83) BS04 ZN ? GO:0003676 ... P12497 38582148
    897425 8w34:I (2.83) BS05 DLU ? GO:0003676 ... P12497 38582148
    897426 8w34:I (2.83) BS06 MG ? GO:0003676 ... P12497 38582148
    897427 8w34:I (2.83) BS07 MG ? GO:0003676 ... P12497 38582148
    897428 8w34:L (2.83) BS01 dna ? GO:0003676 ... P12497 38582148
    897429 8w34:M (2.83) BS01 dna ? GO:0003676 ... P12497 38582148
    897430 8w34:M (2.83) BS02 dna ? GO:0003676 ... P12497 38582148
    897431 8w35:A (2.61) BS01 rna N/A GO:0003677 ... H9C180 38987591
    897432 8w35:B (2.61) BS01 rna N/A GO:0003677 ... H9C180 38987591
    897433 8w38:A (2.6) BS01 TZ0 N/A N/A P21802 39706336
    897434 8w38:B (2.6) BS01 TZ0 N/A N/A P21802 39706336
    897435 8w38:C (2.6) BS01 TZ0 N/A N/A P21802 39706336
    897436 8w38:D (2.6) BS01 TZ0 N/A N/A P21802 39706336
    897437 8w3a:A (1.8) BS01 HEM ? GO:0015671 ... A9DF82 38959524
    897438 8w3a:A (1.8) BS02 A1ADT ? GO:0015671 ... A9DF82 38959524
    897439 8w3a:B (1.8) BS01 A1ADT ? GO:0015671 ... A9DF82 38959524
    897440 8w3a:B (1.8) BS02 HEM ? GO:0015671 ... A9DF82 38959524
    897441 8w3a:C (1.8) BS01 A1ADT ? GO:0015671 ... A9DF82 38959524
    897442 8w3a:C (1.8) BS02 HEM ? GO:0015671 ... A9DF82 38959524
    897443 8w3a:D (1.8) BS01 A1ADT ? GO:0015671 ... A9DF82 38959524
    897444 8w3a:D (1.8) BS02 HEM ? GO:0015671 ... A9DF82 38959524
    897445 8w3b:A (2.23) BS01 TZ0 N/A N/A P21802 39706336
    897446 8w3b:B (2.23) BS01 TZ0 N/A N/A P21802 39706336
    897447 8w3b:C (2.23) BS01 TZ0 N/A N/A P21802 39706336
    897448 8w3b:D (2.23) BS01 TZ0 N/A N/A P21802 39706336
    897449 8w3c:A (1.97) BS01 AG7 N/A N/A A1E4A3 39861864
    897450 8w3d:A (2.04) BS01 TZ0 N/A N/A P21802 39706336
    897451 8w3d:B (2.04) BS01 TZ0 N/A N/A P21802 39706336
    897452 8w3d:C (2.04) BS01 TZ0 N/A N/A P21802 39706336
    897453 8w3d:D (2.04) BS01 TZ0 N/A N/A P21802 39706336
    897454 8w3m:A (1.97) BS01 XNV N/A N/A A1E4A3 39861864
    897455 8w3t:A (1.98) BS01 UED N/A N/A A1E4A3 39861864
    897456 8w3w:A (1.976) BS01 A1AFO 2.7.11.1 GO:0000287 ... Q9NWZ3 38628800
    897457 8w3w:B (1.976) BS01 A1AFO 2.7.11.1 GO:0000287 ... Q9NWZ3 38628800
    897458 8w3w:C (1.976) BS01 A1AFO 2.7.11.1 GO:0000287 ... Q9NWZ3 38628800
    897459 8w3w:D (1.976) BS01 A1AFO 2.7.11.1 GO:0000287 ... Q9NWZ3 38628800
    897460 8w3x:A (1.765) BS01 A1AFH 2.7.11.1 GO:0000287 ... Q9NWZ3 38628800
    897461 8w3x:B (1.765) BS01 A1AFH 2.7.11.1 GO:0000287 ... Q9NWZ3 38628800
    897462 8w3x:C (1.765) BS01 A1AFH 2.7.11.1 GO:0000287 ... Q9NWZ3 38628800
    897463 8w3x:D (1.765) BS01 A1AFH 2.7.11.1 GO:0000287 ... Q9NWZ3 38628800
    897464 8w41:A (3.54) BS01 ADP ? GO:0000146 ... Q9UM54 38331992
    897465 8w41:B (3.54) BS01 CA ? GO:0000086 ... P0DP26 38331992
    897466 8w41:B (3.54) BS02 CA ? GO:0000086 ... P0DP26 38331992
    897467 8w41:B (3.54) BS03 CA ? GO:0000086 ... P0DP26 38331992
    897468 8w41:B (3.54) BS04 CA ? GO:0000086 ... P0DP26 38331992
    897469 8w42:A (1.45) BS01 STL ? N/A P02766 37910439
    897470 8w42:B (1.45) BS01 STL ? N/A P02766 37910439
    897471 8w43:A (1.302) BS01 PIT ? N/A P02766 37910439
    897472 8w43:B (1.302) BS01 PIT ? N/A P02766 37910439
    897473 8w44:A (1.399) BS01 EZE ? N/A P02766 37910439
    897474 8w44:B (1.399) BS01 EZE ? N/A P02766 37910439
    897475 8w44:B (1.399) BS02 EZE ? N/A P02766 37910439
    897476 8w45:A (1.1) BS01 8KZ ? N/A P02766 37910439
    897477 8w45:B (1.1) BS01 8KZ ? N/A P02766 37910439
    897478 8w46:A (1.35) BS01 3RL ? N/A P02766 37910439
    897479 8w46:B (1.35) BS01 3RL ? N/A P02766 37910439
    897480 8w46:B (1.35) BS02 3RL ? N/A P02766 37910439
    897481 8w47:A (1.4) BS01 P5O ? N/A P02766 37910439
    897482 8w47:B (1.4) BS01 P5O ? N/A P02766 37910439
    897483 8w48:A (1.19) BS01 PIT ? N/A P02766 37910439
    897484 8w48:B (1.19) BS01 PIT ? N/A P02766 37910439
    897485 8w49:A (1.77) BS01 NAP N/A GO:0000287 ... O88844 N/A
    897486 8w49:A (1.77) BS02 NAP N/A GO:0000287 ... O88844 N/A
    897487 8w49:B (1.77) BS01 NAP N/A GO:0000287 ... O88844 N/A
    897488 8w49:B (1.77) BS02 NAP N/A GO:0000287 ... O88844 N/A
    897489 8w49:C (1.77) BS01 NAP N/A GO:0000287 ... O88844 N/A
    897490 8w49:D (1.77) BS01 NAP N/A GO:0000287 ... O88844 N/A
    897491 8w4a:A (2.69) BS01 UV6 N/A GO:0005764 ... Q68CP4 38769387
    897492 8w4a:A (2.69) BS02 ACO N/A GO:0005764 ... Q68CP4 38769387
    897493 8w4a:A (2.69) BS03 CLR N/A GO:0005764 ... Q68CP4 38769387
    897494 8w4a:A (2.69) BS04 CLR N/A GO:0005764 ... Q68CP4 38769387
    897495 8w4a:B (2.69) BS01 UV6 N/A GO:0005764 ... Q68CP4 38769387
    897496 8w4a:B (2.69) BS02 ACO N/A GO:0005764 ... Q68CP4 38769387
    897497 8w4a:B (2.69) BS03 CLR N/A GO:0005764 ... Q68CP4 38769387
    897498 8w4a:B (2.69) BS04 CLR N/A GO:0005764 ... Q68CP4 38769387
    897499 8w4b:A (2.152) BS01 STR N/A GO:0005634 ... Q6DCU6 38965213
    897500 8w4c:A (2.676) BS01 STR N/A GO:0005634 ... Q6DCU6 38965213
    897501 8w4g:A (2.15) BS01 CA N/A N/A N/A 38938812
    897502 8w4i:A (2.9) BS01 CA N/A N/A N/A 38938812
    897503 8w4l:A (3.1) BS01 GAL N/A N/A P0DOX5 38938812
    897504 8w4l:B (3.1) BS01 BMA N/A N/A P0DOX5 38938812
    897505 8w4l:B (3.1) BS02 GAL N/A N/A P0DOX5 38938812
    897506 8w4m:A (2.18) BS01 BMA N/A N/A P0DOX5 38938812
    897507 8w4m:A (2.18) BS02 GAL N/A N/A P0DOX5 38938812
    897508 8w4m:A (2.18) BS03 ZN N/A N/A P0DOX5 38938812
    897509 8w4m:A (2.18) BS04 ZN N/A N/A P0DOX5 38938812
    897510 8w4m:A (2.18) BS05 ZN N/A N/A P0DOX5 38938812
    897511 8w4m:A (2.18) BS06 ZN N/A N/A P0DOX5 38938812
    897512 8w4m:A (2.18) BS07 ZN N/A N/A P0DOX5 38938812
    897513 8w4n:A (3.1) BS01 BMA N/A N/A N/A 38938812
    897514 8w4n:A (3.1) BS02 MAN N/A N/A N/A 38938812
    897515 8w4n:A (3.1) BS03 CA N/A N/A N/A 38938812
    897516 8w4o:5 (3.23) BS01 ET4 ? GO:0009416 ... B5YLU3 38071196
    897517 8w4o:5 (3.23) BS02 A86 ? GO:0009416 ... B5YLU3 38071196
    897518 8w4o:5 (3.23) BS03 CLA ? GO:0009416 ... B5YLU3 38071196
    897519 8w4o:5 (3.23) BS04 CLA ? GO:0009416 ... B5YLU3 38071196
    897520 8w4o:5 (3.23) BS05 CLA ? GO:0009416 ... B5YLU3 38071196
    897521 8w4o:5 (3.23) BS06 CLA ? GO:0009416 ... B5YLU3 38071196
    897522 8w4o:5 (3.23) BS07 CLA ? GO:0009416 ... B5YLU3 38071196
    897523 8w4o:5 (3.23) BS08 CLA ? GO:0009416 ... B5YLU3 38071196
    897524 8w4o:5 (3.23) BS09 CLA ? GO:0009416 ... B5YLU3 38071196
    897525 8w4o:5 (3.23) BS10 CLA ? GO:0009416 ... B5YLU3 38071196
    897526 8w4o:5 (3.23) BS11 CLA ? GO:0009416 ... B5YLU3 38071196
    897527 8w4o:6 (3.23) BS01 CLA ? GO:0009416 ... B8BX93 38071196
    897528 8w4o:6 (3.23) BS02 CLA ? GO:0009416 ... B8BX93 38071196
    897529 8w4o:6 (3.23) BS03 A86 ? GO:0009416 ... B8BX93 38071196
    897530 8w4o:6 (3.23) BS04 DD6 ? GO:0009416 ... B8BX93 38071196
    897531 8w4o:6 (3.23) BS05 DD6 ? GO:0009416 ... B8BX93 38071196
    897532 8w4o:6 (3.23) BS06 CLA ? GO:0009416 ... B8BX93 38071196
    897533 8w4o:6 (3.23) BS07 CLA ? GO:0009416 ... B8BX93 38071196
    897534 8w4o:6 (3.23) BS08 CLA ? GO:0009416 ... B8BX93 38071196
    897535 8w4o:6 (3.23) BS09 CLA ? GO:0009416 ... B8BX93 38071196
    897536 8w4o:6 (3.23) BS10 CLA ? GO:0009416 ... B8BX93 38071196
    897537 8w4o:6 (3.23) BS11 CLA ? GO:0009416 ... B8BX93 38071196
    897538 8w4o:6 (3.23) BS12 CLA ? GO:0009416 ... B8BX93 38071196
    897539 8w4o:6 (3.23) BS13 CLA ? GO:0009416 ... B8BX93 38071196
    897540 8w4o:6 (3.23) BS14 CLA ? GO:0009416 ... B8BX93 38071196
    897541 8w4o:6 (3.23) BS15 CLA ? GO:0009416 ... B8BX93 38071196
    897542 8w4o:6 (3.23) BS16 CLA ? GO:0009416 ... B8BX93 38071196
    897543 8w4o:6 (3.23) BS17 CLA ? GO:0009416 ... B8BX93 38071196
    897544 8w4o:7 (3.23) BS01 A86 N/A GO:0009765 ... N/A 38071196
    897545 8w4o:7 (3.23) BS02 A86 N/A GO:0009765 ... N/A 38071196
    897546 8w4o:7 (3.23) BS03 DD6 N/A GO:0009765 ... N/A 38071196
    897547 8w4o:7 (3.23) BS04 DD6 N/A GO:0009765 ... N/A 38071196
    897548 8w4o:7 (3.23) BS05 CLA N/A GO:0009765 ... N/A 38071196
    897549 8w4o:7 (3.23) BS06 CLA N/A GO:0009765 ... N/A 38071196
    897550 8w4o:7 (3.23) BS07 CLA N/A GO:0009765 ... N/A 38071196
    897551 8w4o:7 (3.23) BS08 CLA N/A GO:0009765 ... N/A 38071196
    897552 8w4o:7 (3.23) BS09 CLA N/A GO:0009765 ... N/A 38071196
    897553 8w4o:7 (3.23) BS10 CLA N/A GO:0009765 ... N/A 38071196
    897554 8w4o:7 (3.23) BS11 CLA N/A GO:0009765 ... N/A 38071196
    897555 8w4o:7 (3.23) BS12 CLA N/A GO:0009765 ... N/A 38071196
    897556 8w4o:7 (3.23) BS13 CLA N/A GO:0009765 ... N/A 38071196
    897557 8w4o:7 (3.23) BS14 CLA N/A GO:0009765 ... N/A 38071196
    897558 8w4o:7 (3.23) BS15 CLA N/A GO:0009765 ... N/A 38071196
    897559 8w4o:7 (3.23) BS16 CLA N/A GO:0009765 ... N/A 38071196
    897560 8w4o:7 (3.23) BS17 CLA N/A GO:0009765 ... N/A 38071196
    897561 8w4o:7 (3.23) BS18 CLA N/A GO:0009765 ... N/A 38071196
    897562 8w4p:3 (3.48) BS01 A86 ? GO:0009416 ... B8BVI1 38071196
    897563 8w4p:3 (3.48) BS02 DD6 ? GO:0009416 ... B8BVI1 38071196
    897564 8w4p:3 (3.48) BS03 CLA ? GO:0009416 ... B8BVI1 38071196
    897565 8w4p:3 (3.48) BS04 CLA ? GO:0009416 ... B8BVI1 38071196
    897566 8w4p:3 (3.48) BS05 CLA ? GO:0009416 ... B8BVI1 38071196
    897567 8w4p:3 (3.48) BS06 CLA ? GO:0009416 ... B8BVI1 38071196
    897568 8w4p:3 (3.48) BS07 CLA ? GO:0009416 ... B8BVI1 38071196
    897569 8w4p:3 (3.48) BS08 CLA ? GO:0009416 ... B8BVI1 38071196
    897570 8w4p:3 (3.48) BS09 CLA ? GO:0009416 ... B8BVI1 38071196
    897571 8w4p:3 (3.48) BS10 CLA ? GO:0009416 ... B8BVI1 38071196
    897572 8w4p:3 (3.48) BS11 CLA ? GO:0009416 ... B8BVI1 38071196
    897573 8w4p:4 (3.48) BS01 A86 N/A N/A N/A 38071196
    897574 8w4p:4 (3.48) BS02 A86 N/A N/A N/A 38071196
    897575 8w4p:4 (3.48) BS03 CLA N/A N/A N/A 38071196
    897576 8w4p:4 (3.48) BS04 CLA N/A N/A N/A 38071196
    897577 8w4p:4 (3.48) BS05 CLA N/A N/A N/A 38071196
    897578 8w4p:4 (3.48) BS06 CLA N/A N/A N/A 38071196
    897579 8w4p:4 (3.48) BS07 CLA N/A N/A N/A 38071196
    897580 8w4p:4 (3.48) BS08 CLA N/A N/A N/A 38071196
    897581 8w4p:4 (3.48) BS09 CLA N/A N/A N/A 38071196
    897582 8w4p:p (3.48) BS01 CLA ? GO:0009416 ... B8BUU4 38071196
    897583 8w4p:p (3.48) BS02 CLA ? GO:0009416 ... B8BUU4 38071196
    897584 8w4p:p (3.48) BS03 CLA ? GO:0009416 ... B8BUU4 38071196
    897585 8w4p:p (3.48) BS04 CLA ? GO:0009416 ... B8BUU4 38071196
    897586 8w4p:p (3.48) BS05 CLA ? GO:0009416 ... B8BUU4 38071196
    897587 8w4p:p (3.48) BS06 CLA ? GO:0009416 ... B8BUU4 38071196
    897588 8w4p:p (3.48) BS07 CLA ? GO:0009416 ... B8BUU4 38071196
    897589 8w4p:p (3.48) BS08 CLA ? GO:0009416 ... B8BUU4 38071196
    897590 8w4p:p (3.48) BS09 A86 ? GO:0009416 ... B8BUU4 38071196
    897591 8w4p:p (3.48) BS10 DD6 ? GO:0009416 ... B8BUU4 38071196
    897592 8w4q:A (1.55) BS01 ZN 3.1.4.53 GO:0004114 ... Q08499 37918035
    897593 8w4q:A (1.55) BS02 3NG 3.1.4.53 GO:0004114 ... Q08499 37918035
    897594 8w4q:B (1.55) BS01 ZN 3.1.4.53 GO:0004114 ... Q08499 37918035
    897595 8w4q:B (1.55) BS02 3NG 3.1.4.53 GO:0004114 ... Q08499 37918035
    897596 8w4r:A (1.37) BS01 AJR 3.1.4.53 GO:0004114 ... Q08499 37918035
    897597 8w4r:A (1.37) BS02 ZN 3.1.4.53 GO:0004114 ... Q08499 37918035
    897598 8w4r:B (1.37) BS01 AJR 3.1.4.53 GO:0004114 ... Q08499 37918035
    897599 8w4r:B (1.37) BS02 ZN 3.1.4.53 GO:0004114 ... Q08499 37918035
    897600 8w4s:A (1.848) BS01 ZN 3.1.4.35 GO:0004114 ... O76074 37918035

    Reference:
  • Chengxin Zhang, Xi Zhang, Lydia Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).