SEQ2FUN

BioLiP
Download all results in tab-seperated text for 1072681 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.
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    # PDB
    (Resolution Å)
    Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    897401 8uzg:U (3.7) BS01 rna N/A GO:0000027 ... P60624 40789848
    897402 8uzg:V (3.7) BS01 rna N/A GO:0000027 ... P68919 40789848
    897403 8uzg:V (3.7) BS02 rna N/A GO:0000027 ... P68919 40789848
    897404 8uzg:W (3.7) BS01 rna N/A GO:0000027 ... P0A7L8 40789848
    897405 8uzg:W (3.7) BS02 rna N/A GO:0000027 ... P0A7L8 40789848
    897406 8uzg:X (3.7) BS01 rna N/A GO:0000027 ... P0A7M2 40789848
    897407 8uzg:Y (3.7) BS01 rna N/A GO:0000027 ... P0A7M6 40789848
    897408 8uzg:Z (3.7) BS01 rna N/A GO:0000027 ... P0AG51 40789848
    897409 8uzg:Z (3.7) BS02 rna N/A GO:0000027 ... P0AG51 40789848
    897410 8uzg:b (3.7) BS01 rna N/A GO:0000027 ... P0A7N4 40789848
    897411 8uzg:c (3.7) BS01 rna N/A GO:0000027 ... P0A7N9 40789848
    897412 8uzg:d (3.7) BS01 rna N/A GO:0002181 ... P0A7P5 40789848
    897413 8uzg:e (3.7) BS01 rna N/A GO:0002181 ... P0A7Q1 40789848
    897414 8uzg:f (3.7) BS01 rna N/A GO:0002181 ... P0A7Q6 40789848
    897415 8uzg:g (3.7) BS01 rna N/A GO:0003735 ... P0A7V0 40789848
    897416 8uzg:h (3.7) BS01 rna N/A GO:0003676 ... P0A7V3 40789848
    897417 8uzg:i (3.7) BS01 rna N/A GO:0000028 ... P0A7V8 40789848
    897418 8uzg:j (3.7) BS01 rna N/A GO:0000028 ... P0A7W1 40789848
    897419 8uzg:k (3.7) BS01 rna N/A GO:0002181 ... P02358 40789848
    897420 8uzg:l (3.7) BS01 rna N/A GO:0000028 ... P02359 40789848
    897421 8uzg:m (3.7) BS01 rna N/A GO:0000028 ... P0A7W7 40789848
    897422 8uzg:n (3.7) BS01 rna N/A GO:0002181 ... P0A7X3 40789848
    897423 8uzg:o (3.7) BS01 rna N/A GO:0000049 ... P0A7R5 40789848
    897424 8uzg:p (3.7) BS01 rna N/A GO:0002181 ... P0A7R9 40789848
    897425 8uzg:q (3.7) BS01 rna N/A GO:0000049 ... P0A7S3 40789848
    897426 8uzg:r (3.7) BS01 rna N/A GO:0000049 ... P0A7S9 40789848
    897427 8uzg:r (3.7) BS02 MG N/A GO:0000049 ... P0A7S9 40789848
    897428 8uzg:s (3.7) BS01 rna N/A GO:0000028 ... P0AG59 40789848
    897429 8uzg:t (3.7) BS01 rna N/A GO:0000028 ... P0ADZ4 40789848
    897430 8uzg:t (3.7) BS02 rna N/A GO:0000028 ... P0ADZ4 40789848
    897431 8uzg:u (3.7) BS01 rna N/A GO:0000028 ... P0A7T3 40789848
    897432 8uzg:v (3.7) BS01 rna N/A GO:0000028 ... P0AG63 40789848
    897433 8uzg:w (3.7) BS01 rna N/A GO:0002181 ... P0A7T7 40789848
    897434 8uzg:x (3.7) BS01 rna N/A GO:0002181 ... P0A7U3 40789848
    897435 8uzg:y (3.7) BS01 rna N/A GO:0000028 ... P0A7U7 40789848
    897436 8uzh:A (2.8) BS01 CA ?
    3.2.1.1
    5.4.99.16
    GO:0000023 ... P9WQ19
    Q12306
    38485491
    897437 8uzh:A (2.8) BS02 CA ?
    3.2.1.1
    5.4.99.16
    GO:0000023 ... P9WQ19
    Q12306
    38485491
    897438 8uzh:B (2.8) BS01 CA ?
    3.2.1.1
    5.4.99.16
    GO:0000023 ... P9WQ19
    Q12306
    38485491
    897439 8uzj:A (2.3) BS01 CA ? GO:0004888 ... P0ABE7
    P36544
    38382524
    897440 8uzj:A (2.3) BS02 9Z9 ? GO:0004888 ... P0ABE7
    P36544
    38382524
    897441 8uzj:A (2.3) BS03 EPJ ? GO:0004888 ... P0ABE7
    P36544
    38382524
    897442 8uzj:A (2.3) BS04 IVM ? GO:0004888 ... P0ABE7
    P36544
    38382524
    897443 8uzj:A (2.3) BS05 IVM ? GO:0004888 ... P0ABE7
    P36544
    38382524
    897444 8uzj:A (2.3) BS06 EPJ ? GO:0004888 ... P0ABE7
    P36544
    38382524
    897445 8uzj:B (2.3) BS01 EPJ ? GO:0004888 ... P0ABE7
    P36544
    38382524
    897446 8uzj:B (2.3) BS02 IVM ? GO:0004888 ... P0ABE7
    P36544
    38382524
    897447 8uzj:B (2.3) BS03 CA ? GO:0004888 ... P0ABE7
    P36544
    38382524
    897448 8uzj:B (2.3) BS04 9Z9 ? GO:0004888 ... P0ABE7
    P36544
    38382524
    897449 8uzj:B (2.3) BS05 EPJ ? GO:0004888 ... P0ABE7
    P36544
    38382524
    897450 8uzj:B (2.3) BS06 IVM ? GO:0004888 ... P0ABE7
    P36544
    38382524
    897451 8uzj:C (2.3) BS01 EPJ ? GO:0004888 ... P0ABE7
    P36544
    38382524
    897452 8uzj:C (2.3) BS02 IVM ? GO:0004888 ... P0ABE7
    P36544
    38382524
    897453 8uzj:C (2.3) BS03 CA ? GO:0004888 ... P0ABE7
    P36544
    38382524
    897454 8uzj:C (2.3) BS04 9Z9 ? GO:0004888 ... P0ABE7
    P36544
    38382524
    897455 8uzj:C (2.3) BS05 EPJ ? GO:0004888 ... P0ABE7
    P36544
    38382524
    897456 8uzj:C (2.3) BS06 IVM ? GO:0004888 ... P0ABE7
    P36544
    38382524
    897457 8uzj:D (2.3) BS01 EPJ ? GO:0004888 ... P0ABE7
    P36544
    38382524
    897458 8uzj:D (2.3) BS02 IVM ? GO:0004888 ... P0ABE7
    P36544
    38382524
    897459 8uzj:D (2.3) BS03 CA ? GO:0004888 ... P0ABE7
    P36544
    38382524
    897460 8uzj:D (2.3) BS04 9Z9 ? GO:0004888 ... P0ABE7
    P36544
    38382524
    897461 8uzj:D (2.3) BS05 EPJ ? GO:0004888 ... P0ABE7
    P36544
    38382524
    897462 8uzj:D (2.3) BS06 IVM ? GO:0004888 ... P0ABE7
    P36544
    38382524
    897463 8uzj:E (2.3) BS01 IVM ? GO:0004888 ... P0ABE7
    P36544
    38382524
    897464 8uzj:E (2.3) BS02 EPJ ? GO:0004888 ... P0ABE7
    P36544
    38382524
    897465 8uzj:E (2.3) BS03 IVM ? GO:0004888 ... P0ABE7
    P36544
    38382524
    897466 8uzj:E (2.3) BS04 CA ? GO:0004888 ... P0ABE7
    P36544
    38382524
    897467 8uzj:E (2.3) BS05 9Z9 ? GO:0004888 ... P0ABE7
    P36544
    38382524
    897468 8uzj:E (2.3) BS06 EPJ ? GO:0004888 ... P0ABE7
    P36544
    38382524
    897469 8uzk:A (1.9) BS01 NAP 1.2.1.8 GO:0006578 ... A0A0H3FPU4 N/A
    897470 8uzk:B (1.9) BS01 NAP 1.2.1.8 GO:0006578 ... A0A0H3FPU4 N/A
    897471 8uzk:C (1.9) BS01 NAP 1.2.1.8 GO:0006578 ... A0A0H3FPU4 N/A
    897472 8uzk:D (1.9) BS01 NAP 1.2.1.8 GO:0006578 ... A0A0H3FPU4 N/A
    897473 8uzk:D (1.9) BS02 NAP 1.2.1.8 GO:0006578 ... A0A0H3FPU4 N/A
    897474 8uzm:A (2.2) BS01 NDP 1.2.1.8 GO:0006578 ... A0A0H3FPU4 N/A
    897475 8uzm:B (2.2) BS01 NDP 1.2.1.8 GO:0006578 ... A0A0H3FPU4 N/A
    897476 8uzm:C (2.2) BS01 NDP 1.2.1.8 GO:0006578 ... A0A0H3FPU4 N/A
    897477 8uzm:D (2.2) BS01 NDP 1.2.1.8 GO:0006578 ... A0A0H3FPU4 N/A
    897478 8uzn:A (2.15) BS01 AMP 1.2.1.8 GO:0006578 ... A0A0H3FPU4 N/A
    897479 8uzn:B (2.15) BS01 AMP 1.2.1.8 GO:0006578 ... A0A0H3FPU4 N/A
    897480 8uzn:C (2.15) BS01 AMP 1.2.1.8 GO:0006578 ... A0A0H3FPU4 N/A
    897481 8uzn:D (2.15) BS01 AMP 1.2.1.8 GO:0006578 ... A0A0H3FPU4 N/A
    897482 8uzo:A (2.1) BS01 ADP 1.2.1.8 GO:0006578 ... A0A0H3FPU4 N/A
    897483 8uzo:B (2.1) BS01 ADP 1.2.1.8 GO:0006578 ... A0A0H3FPU4 N/A
    897484 8uzo:C (2.1) BS01 ADP 1.2.1.8 GO:0006578 ... A0A0H3FPU4 N/A
    897485 8uzo:D (2.1) BS01 ADP 1.2.1.8 GO:0006578 ... A0A0H3FPU4 N/A
    897486 8uzt:A (1.9) BS01 dna N/A GO:0003697 ... Q04837 39106165
    897487 8uzt:B (1.9) BS01 dna N/A GO:0003697 ... Q04837 39106165
    897488 8uzt:C (1.9) BS01 dna N/A GO:0003697 ... Q04837 39106165
    897489 8uzt:D (1.9) BS01 dna N/A GO:0003697 ... Q04837 39106165
    897490 8uzu:A (1.9) BS01 HEM ? GO:0015671 ... A9DF82 39864624
    897491 8uzu:B (1.9) BS01 HEM ? GO:0015671 ... A9DF82 39864624
    897492 8uzu:C (1.9) BS01 HEM ? GO:0015671 ... A9DF82 39864624
    897493 8uzu:D (1.9) BS01 HEM ? GO:0015671 ... A9DF82 39864624
    897494 8uzv:A (1.846) BS01 Y9G N/A GO:0005634 ... Q9NUW8 N/A
    897495 8uzv:B (1.846) BS01 Y9G N/A GO:0005634 ... Q9NUW8 N/A
    897496 8uzx:A (5.4) BS01 ADP ? GO:0000146 ... A0A8W4F696 38387550
    897497 8uzx:B (5.4) BS01 ADP ? GO:0000146 ... A0A8W4F696 38387550
    897498 8uzx:C (5.4) BS01 CA ? GO:0003009 ... P63317 38387550
    897499 8uzx:C (5.4) BS02 CA ? GO:0003009 ... P63317 38387550
    897500 8uzx:C (5.4) BS03 CA ? GO:0003009 ... P63317 38387550
    897501 8uzy:A (5.3) BS01 ADP ? GO:0000146 ... A0A8W4F696 38387550
    897502 8uzy:B (5.3) BS01 ADP ? GO:0000146 ... A0A8W4F696 38387550
    897503 8uzy:C (5.3) BS01 CA ? GO:0003009 ... P63317 38387550
    897504 8uzy:C (5.3) BS02 CA ? GO:0003009 ... P63317 38387550
    897505 8uzy:C (5.3) BS03 CA ? GO:0003009 ... P63317 38387550
    897506 8uzz:A (1.93) BS01 YA5 N/A GO:0005634 ... Q9NUW8 N/A
    897507 8uzz:B (1.93) BS01 YA5 N/A GO:0005634 ... Q9NUW8 N/A
    897508 8v01:A (5.5) BS01 ADP ? GO:0000146 ... A0A8W4F696 38387550
    897509 8v01:B (5.5) BS01 ADP ? GO:0000146 ... A0A8W4F696 38387550
    897510 8v01:C (5.5) BS01 CA ? GO:0003009 ... P63317 38387550
    897511 8v01:C (5.5) BS02 CA ? GO:0003009 ... P63317 38387550
    897512 8v01:C (5.5) BS03 CA ? GO:0003009 ... P63317 38387550
    897513 8v02:D (2.9) BS01 JZ0 N/A GO:0004984 ... Q177X3 38870275
    897514 8v03:B (4.0) BS01 rna N/A GO:0000027 ... P60422 40789848
    897515 8v03:B (4.0) BS02 rna N/A GO:0000027 ... P60422 40789848
    897516 8v03:C (4.0) BS01 rna N/A GO:0000027 ... P60438 40789848
    897517 8v03:D (4.0) BS01 rna N/A GO:0001070 ... P60723 40789848
    897518 8v03:E (4.0) BS01 rna N/A GO:0000027 ... P62399 40789848
    897519 8v03:E (4.0) BS02 rna N/A GO:0000027 ... P62399 40789848
    897520 8v03:F (4.0) BS01 rna N/A GO:0000027 ... P0AG55 40789848
    897521 8v03:G (4.0) BS01 rna N/A GO:0002181 ... P0A7R1 40789848
    897522 8v03:J (4.0) BS01 rna N/A GO:0002181 ... P0AA10 40789848
    897523 8v03:K (4.0) BS01 rna N/A GO:0002181 ... P0ADY3 40789848
    897524 8v03:K (4.0) BS02 rna N/A GO:0002181 ... P0ADY3 40789848
    897525 8v03:L (4.0) BS01 rna N/A GO:0002181 ... P02413 40789848
    897526 8v03:M (4.0) BS01 rna N/A GO:0000027 ... P0ADY7 40789848
    897527 8v03:M (4.0) BS02 rna N/A GO:0000027 ... P0ADY7 40789848
    897528 8v03:N (4.0) BS01 rna N/A GO:0000027 ... P0AG44 40789848
    897529 8v03:O (4.0) BS01 rna N/A GO:0002181 ... P0C018 40789848
    897530 8v03:O (4.0) BS02 rna N/A GO:0002181 ... P0C018 40789848
    897531 8v03:P (4.0) BS01 rna N/A GO:0000027 ... P0A7K6 40789848
    897532 8v03:P (4.0) BS02 rna N/A GO:0000027 ... P0A7K6 40789848
    897533 8v03:Q (4.0) BS01 rna N/A GO:0000027 ... P0A7L3 40789848
    897534 8v03:R (4.0) BS01 rna N/A GO:0002181 ... P0AG48 40789848
    897535 8v03:S (4.0) BS01 rna N/A GO:0002181 ... P61175 40789848
    897536 8v03:T (4.0) BS01 rna N/A GO:0000027 ... P0ADZ0 40789848
    897537 8v03:U (4.0) BS01 rna N/A GO:0000027 ... P60624 40789848
    897538 8v03:V (4.0) BS01 rna N/A GO:0000027 ... P68919 40789848
    897539 8v03:W (4.0) BS01 rna N/A GO:0000027 ... P0A7L8 40789848
    897540 8v03:W (4.0) BS02 rna N/A GO:0000027 ... P0A7L8 40789848
    897541 8v03:X (4.0) BS01 rna N/A GO:0000027 ... P0A7M2 40789848
    897542 8v03:X (4.0) BS02 rna N/A GO:0000027 ... P0A7M2 40789848
    897543 8v03:Y (4.0) BS01 rna N/A GO:0000027 ... P0A7M6 40789848
    897544 8v03:Z (4.0) BS01 rna N/A GO:0000027 ... P0AG51 40789848
    897545 8v03:Z (4.0) BS02 rna N/A GO:0000027 ... P0AG51 40789848
    897546 8v03:b (4.0) BS01 rna N/A GO:0000027 ... P0A7N4 40789848
    897547 8v03:c (4.0) BS01 rna N/A GO:0000027 ... P0A7N9 40789848
    897548 8v03:d (4.0) BS01 rna N/A GO:0002181 ... P0A7P5 40789848
    897549 8v03:e (4.0) BS01 rna N/A GO:0002181 ... P0A7Q1 40789848
    897550 8v03:f (4.0) BS01 rna N/A GO:0002181 ... P0A7Q6 40789848
    897551 8v03:g (4.0) BS01 rna N/A GO:0000028 ... P0A7V0 40789848
    897552 8v03:h (4.0) BS01 rna N/A GO:0003676 ... P0A7V3 40789848
    897553 8v03:i (4.0) BS01 rna N/A GO:0000028 ... P0A7V8 40789848
    897554 8v03:j (4.0) BS01 rna N/A GO:0000028 ... P0A7W1 40789848
    897555 8v03:k (4.0) BS01 rna N/A GO:0002181 ... P02358 40789848
    897556 8v03:l (4.0) BS01 rna N/A GO:0000028 ... P02359 40789848
    897557 8v03:m (4.0) BS01 rna N/A GO:0000028 ... P0A7W7 40789848
    897558 8v03:n (4.0) BS01 rna N/A GO:0002181 ... P0A7X3 40789848
    897559 8v03:o (4.0) BS01 rna N/A GO:0000049 ... P0A7R5 40789848
    897560 8v03:p (4.0) BS01 rna N/A GO:0002181 ... P0A7R9 40789848
    897561 8v03:q (4.0) BS01 rna N/A GO:0000049 ... P0A7S3 40789848
    897562 8v03:r (4.0) BS01 rna N/A GO:0000049 ... P0A7S9 40789848
    897563 8v03:s (4.0) BS01 rna N/A GO:0003735 ... P0AG59 40789848
    897564 8v03:t (4.0) BS01 rna N/A GO:0000028 ... P0ADZ4 40789848
    897565 8v03:t (4.0) BS02 rna N/A GO:0000028 ... P0ADZ4 40789848
    897566 8v03:u (4.0) BS01 rna N/A GO:0000028 ... P0A7T3 40789848
    897567 8v03:v (4.0) BS01 rna N/A GO:0000028 ... P0AG63 40789848
    897568 8v03:w (4.0) BS01 rna N/A GO:0002181 ... P0A7T7 40789848
    897569 8v03:x (4.0) BS01 rna N/A GO:0002181 ... P0A7U3 40789848
    897570 8v03:y (4.0) BS01 rna N/A GO:0000028 ... P0A7U7 40789848
    897571 8v03:z (4.0) BS01 rna N/A GO:0000028 ... P68679 40789848
    897572 8v04:B (1.58) BS01 GBS 3.4.21.122 GO:0004252 ... O15393 40973081
    897573 8v05:A (2.08) BS01 MAN 3.1.16.1 GO:0003824 ... O35405 38537643
    897574 8v05:A (2.08) BS02 CYS 3.1.16.1 GO:0003824 ... O35405 38537643
    897575 8v06:B (2.73) BS01 BMA 3.1.16.1 GO:0003824 ... O35405 38537643
    897576 8v06:B (2.73) BS02 MAN 3.1.16.1 GO:0003824 ... O35405 38537643
    897577 8v07:B (1.99) BS01 MAN 3.1.16.1 GO:0003824 ... O35405 38537643
    897578 8v07:B (1.99) BS02 MAN 3.1.16.1 GO:0003824 ... O35405 38537643
    897579 8v07:C (1.99) BS01 MAN 3.1.16.1 GO:0003824 ... O35405 38537643
    897580 8v08:A (3.0) BS01 dna 3.1.16.1 GO:0003824 ... Q96BZ4 38537643
    897581 8v08:B (3.0) BS01 dna 3.1.16.1 GO:0003824 ... Q96BZ4 38537643
    897582 8v09:A (1.61) BS01 PGH N/A GO:0004807 ... N/A 39145435
    897583 8v0a:B (2.05) BS01 PGH N/A GO:0004807 ... N/A 39145435
    897584 8v0b:A (1.65) BS01 YCI N/A GO:0005634 ... Q9NUW8 N/A
    897585 8v0b:B (1.65) BS01 YCI N/A GO:0005634 ... Q9NUW8 N/A
    897586 8v0c:A (1.62) BS01 YE3 N/A GO:0005634 ... Q9NUW8 N/A
    897587 8v0c:B (1.62) BS01 YE3 N/A GO:0005634 ... Q9NUW8 N/A
    897588 8v0d:A (2.4) BS01 ZN N/A GO:0000209 ... P62837
    Q86YT6
    39121852
    897589 8v0d:A (2.4) BS02 ZN N/A GO:0000209 ... P62837
    Q86YT6
    39121852
    897590 8v0d:A (2.4) BS03 ZN N/A GO:0000209 ... P62837
    Q86YT6
    39121852
    897591 8v0d:B (2.4) BS01 ZN N/A GO:0000209 ... P62837
    Q86YT6
    39121852
    897592 8v0d:B (2.4) BS02 ZN N/A GO:0000209 ... P62837
    Q86YT6
    39121852
    897593 8v0g:A (3.11) BS01 CLR N/A GO:0005886 ... Q8I266 39693420
    897594 8v0i:A (5.8) BS01 ADP ? GO:0000146 ... A0A8W4F696 38387550
    897595 8v0i:B (5.8) BS01 ADP ? GO:0000146 ... A0A8W4F696 38387550
    897596 8v0i:C (5.8) BS01 CA ? GO:0003009 ... P63317 38387550
    897597 8v0i:C (5.8) BS02 CA ? GO:0003009 ... P63317 38387550
    897598 8v0i:C (5.8) BS03 CA ? GO:0003009 ... P63317 38387550
    897599 8v0j:A (2.58) BS01 SF4 N/A GO:0003824 ... O43766 40640146
    897600 8v0j:A (2.58) BS02 F3S N/A GO:0003824 ... O43766 40640146

    Reference:
  • Chengxin Zhang, Xi Zhang, Lydia Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).