SEQ2FUN

BioLiP
Download all results in tab-seperated text for 1072681 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
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  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
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    # PDB
    (Resolution Å)
    Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    897601 8v0j:A (2.58) BS03 SAM N/A GO:0003824 ... O43766 40640146
    897602 8v0j:A (2.58) BS04 YVI N/A GO:0003824 ... O43766 40640146
    897603 8v0j:B (2.58) BS01 SF4 N/A GO:0003824 ... O43766 40640146
    897604 8v0j:B (2.58) BS02 F3S N/A GO:0003824 ... O43766 40640146
    897605 8v0j:B (2.58) BS03 SAM N/A GO:0003824 ... O43766 40640146
    897606 8v0j:B (2.58) BS04 YVI N/A GO:0003824 ... O43766 40640146
    897607 8v0j:C (2.58) BS01 peptide N/A GO:0003824 ... O43766 40640146
    897608 8v0j:C (2.58) BS02 SF4 N/A GO:0003824 ... O43766 40640146
    897609 8v0j:C (2.58) BS03 F3S N/A GO:0003824 ... O43766 40640146
    897610 8v0j:C (2.58) BS04 SAM N/A GO:0003824 ... O43766 40640146
    897611 8v0j:C (2.58) BS05 YVI N/A GO:0003824 ... O43766 40640146
    897612 8v0k:A (5.2) BS01 ADP ? GO:0000146 ... A0A8W4F696 38387550
    897613 8v0k:B (5.2) BS01 ADP ? GO:0000146 ... A0A8W4F696 38387550
    897614 8v0k:C (5.2) BS01 CA ? GO:0003009 ... P63317 38387550
    897615 8v0k:C (5.2) BS02 CA ? GO:0003009 ... P63317 38387550
    897616 8v0k:C (5.2) BS03 CA ? GO:0003009 ... P63317 38387550
    897617 8v0y:A (7.0) BS01 ADP ? GO:0000146 ... A0A8W4F696 38387550
    897618 8v0y:B (7.0) BS01 ADP ? GO:0000146 ... A0A8W4F696 38387550
    897619 8v0z:A (4.56) BS01 LF0 N/A GO:0003676 ... P12497 40409709
    897620 8v0z:B (4.56) BS01 LF0 N/A GO:0003676 ... P12497 40409709
    897621 8v0z:B (4.56) BS02 LF0 N/A GO:0003676 ... P12497 40409709
    897622 8v12:A (3.81) BS01 CLR N/A GO:0005886 ... Q8I266 39693420
    897623 8v14:A (1.9) BS01 CA ? N/A G5EEF9 38265937
    897624 8v14:B (1.9) BS01 CA ? N/A G5EEF9 38265937
    897625 8v15:A (2.4) BS01 peptide 2.3.1.286 GO:0017136 ... Q9NTG7 N/A
    897626 8v15:A (2.4) BS02 ZN 2.3.1.286 GO:0017136 ... Q9NTG7 N/A
    897627 8v15:A (2.4) BS03 CNA 2.3.1.286 GO:0017136 ... Q9NTG7 N/A
    897628 8v15:C (2.4) BS01 peptide 2.3.1.286 GO:0017136 ... Q9NTG7 N/A
    897629 8v15:C (2.4) BS02 ZN 2.3.1.286 GO:0017136 ... Q9NTG7 N/A
    897630 8v15:C (2.4) BS03 Y4T 2.3.1.286 GO:0017136 ... Q9NTG7 N/A
    897631 8v15:C (2.4) BS04 CNA 2.3.1.286 GO:0017136 ... Q9NTG7 N/A
    897632 8v17:A (1.5) BS01 Y4X N/A GO:0016032 ... Q72497 39418501
    897633 8v1f:B (2.19) BS01 7R8 3.4.21.122 GO:0004252 ... O15393 40973081
    897634 8v1f:C (2.19) BS01 FUC 3.4.21.122 GO:0016020 ... O15393 40973081
    897635 8v1f:D (2.19) BS01 7R8 3.4.21.122 GO:0004252 ... O15393 40973081
    897636 8v1g:A (2.98) BS01 CLR N/A GO:0005886 ... Q8I266 39693420
    897637 8v1g:A (2.98) BS02 Y6F N/A GO:0005886 ... Q8I266 39693420
    897638 8v1j:A (2.41596) BS01 ZN ? N/A A0A5B0PMB3 38730532
    897639 8v1j:A (2.41596) BS02 ZN ? N/A A0A5B0PMB3 38730532
    897640 8v1j:A (2.41596) BS03 ZN ? N/A A0A5B0PMB3 38730532
    897641 8v1j:A (2.41596) BS04 ZN ? N/A A0A5B0PMB3 38730532
    897642 8v1j:B (2.41596) BS01 ZN ? N/A A0A5B0PMB3 38730532
    897643 8v1j:B (2.41596) BS02 ZN ? N/A A0A5B0PMB3 38730532
    897644 8v1j:B (2.41596) BS03 ZN ? N/A A0A5B0PMB3 38730532
    897645 8v1j:B (2.41596) BS04 ZN ? N/A A0A5B0PMB3 38730532
    897646 8v1l:A (2.68) BS01 Y9M 3.6.4.12
    3.6.4.13
    N/A Q13283 38284934
    897647 8v1l:B (2.68) BS01 Y9M 3.6.4.12
    3.6.4.13
    N/A Q13283 38284934
    897648 8v1l:C (2.68) BS01 Y9M 3.6.4.12
    3.6.4.13
    N/A Q13283 38284934
    897649 8v1l:D (2.68) BS01 Y9M 3.6.4.12
    3.6.4.13
    N/A Q13283 38284934
    897650 8v1l:E (2.68) BS01 Y9M 3.6.4.12
    3.6.4.13
    N/A Q13283 38284934
    897651 8v1l:F (2.68) BS01 Y9M 3.6.4.12
    3.6.4.13
    N/A Q13283 38284934
    897652 8v1o:A (2.92) BS01 Y9T N/A GO:0000287 ... Q9NWZ3 38920289
    897653 8v1o:B (2.92) BS01 Y9T N/A GO:0000287 ... Q9NWZ3 38920289
    897654 8v1o:C (2.92) BS01 Y9T N/A GO:0000287 ... Q9NWZ3 38920289
    897655 8v1o:D (2.92) BS01 Y9T N/A GO:0000287 ... Q9NWZ3 38920289
    897656 8v1p:A (2.21) BS01 98C ? N/A Q8IVV7 N/A
    897657 8v1q:A (2.7) BS01 dna N/A GO:0000166 ... H9E937 39197451
    897658 8v1q:A (2.7) BS02 dna N/A GO:0000166 ... H9E937 39197451
    897659 8v1q:A (2.7) BS03 MG N/A GO:0000166 ... H9E937 39197451
    897660 8v1q:B (2.7) BS01 dna N/A GO:0003677 ... A0A181ZFK4 39197451
    897661 8v1r:A (2.9) BS01 dna N/A GO:0000166 ... H9E937 39197451
    897662 8v1r:A (2.9) BS02 dna N/A GO:0000166 ... H9E937 39197451
    897663 8v1r:A (2.9) BS03 MG N/A GO:0000166 ... H9E937 39197451
    897664 8v1r:A (2.9) BS04 MG N/A GO:0000166 ... H9E937 39197451
    897665 8v1r:A (2.9) BS05 MG N/A GO:0000166 ... H9E937 39197451
    897666 8v1r:A (2.9) BS06 MG N/A GO:0000166 ... H9E937 39197451
    897667 8v1r:A (2.9) BS07 TTP N/A GO:0000166 ... H9E937 39197451
    897668 8v1r:B (2.9) BS01 dna N/A GO:0003677 ... H9E949 39197451
    897669 8v1s:A (3.26) BS01 dna N/A GO:0000166 ... H9E937 39197451
    897670 8v1s:A (3.26) BS02 dna N/A GO:0000166 ... H9E937 39197451
    897671 8v1s:A (3.26) BS03 MG N/A GO:0000166 ... H9E937 39197451
    897672 8v1s:B (3.26) BS01 dna N/A GO:0003677 ... H9E949 39197451
    897673 8v1t:A (2.8) BS01 dna N/A GO:0000166 ... H9E937 39197451
    897674 8v1t:A (2.8) BS02 dna N/A GO:0000166 ... H9E937 39197451
    897675 8v1t:A (2.8) BS03 MG N/A GO:0000166 ... H9E937 39197451
    897676 8v1t:A (2.8) BS04 MG N/A GO:0000166 ... H9E937 39197451
    897677 8v1t:A (2.8) BS05 MG N/A GO:0000166 ... H9E937 39197451
    897678 8v1t:A (2.8) BS06 MG N/A GO:0000166 ... H9E937 39197451
    897679 8v1t:A (2.8) BS07 AVP N/A GO:0000166 ... H9E937 39197451
    897680 8v1t:B (2.8) BS01 dna N/A GO:0003677 ... H9E949 39197451
    897681 8v1t:B (2.8) BS02 dna N/A GO:0003677 ... H9E949 39197451
    897682 8v1u:A (2.0) BS01 dna N/A GO:0003677 ... P18858 40239996
    897683 8v1u:A (2.0) BS02 dna N/A GO:0003677 ... P18858 40239996
    897684 8v1u:A (2.0) BS03 dna N/A GO:0003677 ... P18858 40239996
    897685 8v1u:A (2.0) BS04 AMP N/A GO:0003677 ... P18858 40239996
    897686 8v1v:A (2.3) BS01 dna N/A GO:0003677 ... P18858 40239996
    897687 8v1v:A (2.3) BS02 dna N/A GO:0003677 ... P18858 40239996
    897688 8v1v:A (2.3) BS03 dna N/A GO:0003677 ... P18858 40239996
    897689 8v1v:A (2.3) BS04 AMP N/A GO:0003677 ... P18858 40239996
    897690 8v1w:A (2.2) BS01 dna N/A GO:0003677 ... P18858 40239996
    897691 8v1w:A (2.2) BS02 dna N/A GO:0003677 ... P18858 40239996
    897692 8v1w:A (2.2) BS03 dna N/A GO:0003677 ... P18858 40239996
    897693 8v1w:A (2.2) BS04 AMP N/A GO:0003677 ... P18858 40239996
    897694 8v1x:A (1.84) BS01 NDP N/A N/A Q9EX54 N/A
    897695 8v1x:B (1.84) BS01 NDP N/A N/A Q9EX54 N/A
    897696 8v1y:C (2.7) BS01 AMP N/A GO:0003824 ... P0ACE7 40849408
    897697 8v1y:D (2.7) BS01 AMP N/A GO:0003824 ... P0ACE7 40849408
    897698 8v22:A (2.2) BS01 MN N/A GO:0003824 ... P0A9C5 40849408
    897699 8v22:B (2.2) BS01 MN N/A GO:0003824 ... P0A9C5 40849408
    897700 8v22:C (2.2) BS01 MN N/A GO:0003824 ... P0A9C5 40849408
    897701 8v22:D (2.2) BS01 MN N/A GO:0003824 ... P0A9C5 40849408
    897702 8v22:E (2.2) BS01 MN N/A GO:0003824 ... P0A9C5 40849408
    897703 8v22:F (2.2) BS01 MN N/A GO:0003824 ... P0A9C5 40849408
    897704 8v22:G (2.2) BS01 MN N/A GO:0003824 ... P0A9C5 40849408
    897705 8v22:H (2.2) BS01 MN N/A GO:0003824 ... P0A9C5 40849408
    897706 8v22:I (2.2) BS01 MN N/A GO:0003824 ... P0A9C5 40849408
    897707 8v22:J (2.2) BS01 MN N/A GO:0003824 ... P0A9C5 40849408
    897708 8v22:K (2.2) BS01 MN N/A GO:0003824 ... P0A9C5 40849408
    897709 8v22:L (2.2) BS01 MN N/A GO:0003824 ... P0A9C5 40849408
    897710 8v24:A (3.6) BS01 ZN ? GO:0005506 ... P0AB59 38635633
    897711 8v24:B (3.6) BS01 24G 3.5.1.108 GO:0009245 ... P0A726 38635633
    897712 8v24:B (3.6) BS02 ZN 3.5.1.108 GO:0009245 ... P0A726 38635633
    897713 8v24:C (3.6) BS01 ZN ? GO:0005506 ... P0AB59 38635633
    897714 8v24:D (3.6) BS01 24G 3.5.1.108 GO:0009245 ... P0A726 38635633
    897715 8v24:D (3.6) BS02 ZN 3.5.1.108 GO:0009245 ... P0A726 38635633
    897716 8v25:A (3.32) BS01 dna N/A GO:0000786 ... P84233 39149911
    897717 8v25:A (3.32) BS02 dna N/A GO:0000786 ... P84233 39149911
    897718 8v25:B (3.32) BS01 dna N/A GO:0000786 ... P62799 39149911
    897719 8v25:C (3.32) BS01 dna N/A GO:0000786 ... P06897 39149911
    897720 8v25:C (3.32) BS02 dna N/A GO:0000786 ... P06897 39149911
    897721 8v25:D (3.32) BS01 dna N/A GO:0000786 ... P02281 39149911
    897722 8v25:D (3.32) BS02 dna N/A GO:0000786 ... P02281 39149911
    897723 8v25:E (3.32) BS01 dna N/A GO:0000786 ... P84233 39149911
    897724 8v25:E (3.32) BS02 dna N/A GO:0000786 ... P84233 39149911
    897725 8v25:F (3.32) BS01 dna N/A GO:0000786 ... P62799 39149911
    897726 8v25:G (3.32) BS01 dna N/A GO:0000786 ... P06897 39149911
    897727 8v25:G (3.32) BS02 dna N/A GO:0000786 ... P06897 39149911
    897728 8v25:H (3.32) BS01 dna N/A GO:0000786 ... P02281 39149911
    897729 8v25:H (3.32) BS02 dna N/A GO:0000786 ... P02281 39149911
    897730 8v26:A (3.33) BS01 dna N/A GO:0000786 ... P84233 39149911
    897731 8v26:A (3.33) BS02 dna N/A GO:0000786 ... P84233 39149911
    897732 8v26:B (3.33) BS01 dna N/A GO:0000786 ... P62799 39149911
    897733 8v26:C (3.33) BS01 dna N/A GO:0000786 ... P06897 39149911
    897734 8v26:C (3.33) BS02 dna N/A GO:0000786 ... P06897 39149911
    897735 8v26:D (3.33) BS01 dna N/A GO:0000786 ... P02281 39149911
    897736 8v26:E (3.33) BS01 dna N/A GO:0000786 ... P84233 39149911
    897737 8v26:E (3.33) BS02 dna N/A GO:0000786 ... P84233 39149911
    897738 8v26:F (3.33) BS01 dna N/A GO:0000786 ... P62799 39149911
    897739 8v26:G (3.33) BS01 dna N/A GO:0000786 ... P06897 39149911
    897740 8v26:H (3.33) BS01 dna N/A GO:0000786 ... P02281 39149911
    897741 8v26:H (3.33) BS02 dna N/A GO:0000786 ... P02281 39149911
    897742 8v27:A (3.34) BS01 dna N/A GO:0000786 ... P84233 39149911
    897743 8v27:A (3.34) BS02 dna N/A GO:0000786 ... P84233 39149911
    897744 8v27:B (3.34) BS01 dna N/A GO:0000786 ... P62799 39149911
    897745 8v27:C (3.34) BS01 dna N/A GO:0000786 ... P06897 39149911
    897746 8v27:C (3.34) BS02 dna N/A GO:0000786 ... P06897 39149911
    897747 8v27:D (3.34) BS01 dna N/A GO:0000786 ... P02281 39149911
    897748 8v27:D (3.34) BS02 dna N/A GO:0000786 ... P02281 39149911
    897749 8v27:E (3.34) BS01 dna N/A GO:0000786 ... P84233 39149911
    897750 8v27:E (3.34) BS02 dna N/A GO:0000786 ... P84233 39149911
    897751 8v27:F (3.34) BS01 dna N/A GO:0000786 ... P62799 39149911
    897752 8v27:F (3.34) BS02 dna N/A GO:0000786 ... P62799 39149911
    897753 8v27:G (3.34) BS01 dna N/A GO:0000786 ... P06897 39149911
    897754 8v27:G (3.34) BS02 dna N/A GO:0000786 ... P06897 39149911
    897755 8v27:H (3.34) BS01 dna N/A GO:0000786 ... P02281 39149911
    897756 8v28:A (3.36) BS01 dna N/A GO:0000786 ... P84233 39149911
    897757 8v28:A (3.36) BS02 dna N/A GO:0000786 ... P84233 39149911
    897758 8v28:B (3.36) BS01 dna N/A GO:0000786 ... P62799 39149911
    897759 8v28:C (3.36) BS01 dna N/A GO:0000786 ... P06897 39149911
    897760 8v28:C (3.36) BS02 dna N/A GO:0000786 ... P06897 39149911
    897761 8v28:D (3.36) BS01 dna N/A GO:0000786 ... P02281 39149911
    897762 8v28:E (3.36) BS01 dna N/A GO:0000786 ... P84233 39149911
    897763 8v28:E (3.36) BS02 dna N/A GO:0000786 ... P84233 39149911
    897764 8v28:F (3.36) BS01 dna N/A GO:0000786 ... P62799 39149911
    897765 8v28:F (3.36) BS02 dna N/A GO:0000786 ... P62799 39149911
    897766 8v28:G (3.36) BS01 dna N/A GO:0000786 ... P06897 39149911
    897767 8v28:G (3.36) BS02 dna N/A GO:0000786 ... P06897 39149911
    897768 8v2f:A (2.09) BS01 YJU N/A GO:0000287 ... Q9NWZ3 38920289
    897769 8v2f:B (2.09) BS01 YJU N/A GO:0000287 ... Q9NWZ3 38920289
    897770 8v2f:C (2.09) BS01 YJU N/A GO:0000287 ... Q9NWZ3 38920289
    897771 8v2f:D (2.09) BS01 YJU N/A GO:0000287 ... Q9NWZ3 38920289
    897772 8v2g:E (3.18) BS01 CA N/A GO:0000785 ... P0DP29 40246884
    897773 8v2g:E (3.18) BS02 CA N/A GO:0000785 ... P0DP29 40246884
    897774 8v2g:F (3.18) BS01 CA N/A GO:0000785 ... P0DP29 40246884
    897775 8v2g:F (3.18) BS02 CA N/A GO:0000785 ... P0DP29 40246884
    897776 8v2g:G (3.18) BS01 CA N/A GO:0000785 ... P0DP29 40246884
    897777 8v2g:G (3.18) BS02 CA N/A GO:0000785 ... P0DP29 40246884
    897778 8v2g:H (3.18) BS01 CA N/A GO:0000785 ... P0DP29 40246884
    897779 8v2g:H (3.18) BS02 CA N/A GO:0000785 ... P0DP29 40246884
    897780 8v2h:E (3.1) BS01 CA N/A GO:0000785 ... P0DP29 40246884
    897781 8v2h:E (3.1) BS02 CA N/A GO:0000785 ... P0DP29 40246884
    897782 8v2h:F (3.1) BS01 CA N/A GO:0000785 ... P0DP29 40246884
    897783 8v2h:F (3.1) BS02 CA N/A GO:0000785 ... P0DP29 40246884
    897784 8v2h:G (3.1) BS01 CA N/A GO:0000785 ... P0DP29 40246884
    897785 8v2h:G (3.1) BS02 CA N/A GO:0000785 ... P0DP29 40246884
    897786 8v2h:H (3.1) BS01 CA N/A GO:0000785 ... P0DP29 40246884
    897787 8v2h:H (3.1) BS02 CA N/A GO:0000785 ... P0DP29 40246884
    897788 8v2i:A () BS01 GTP N/A N/A N/A N/A
    897789 8v2i:B () BS01 G2P N/A N/A N/A N/A
    897790 8v2i:I () BS01 GTP N/A N/A N/A N/A
    897791 8v2i:Q () BS01 G2P N/A N/A N/A N/A
    897792 8v2j:A (2.9) BS01 GTP N/A GO:0000226 ... P68363 N/A
    897793 8v2j:B (2.9) BS01 GDP N/A GO:0000226 ... P07437 N/A
    897794 8v2j:D (2.9) BS01 GTP N/A GO:0000226 ... P68363 N/A
    897795 8v2j:E (2.9) BS01 GDP N/A GO:0000226 ... P07437 N/A
    897796 8v2k:A (1.81) BS01 F0G 4.1.99.1 GO:0006520 ... P28796 40147499
    897797 8v2k:B (1.81) BS01 PLI 4.1.99.1 GO:0006520 ... P28796 40147499
    897798 8v2k:C (1.81) BS01 PLI 4.1.99.1 GO:0006520 ... P28796 40147499
    897799 8v2k:D (1.81) BS01 F0G 4.1.99.1 GO:0006520 ... P28796 40147499
    897800 8v2l:A (2.43) BS01 YK0 N/A GO:0000287 ... Q9NWZ3 38920289

    Reference:
  • Chengxin Zhang, Xi Zhang, Lydia Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).