SEQ2FUN

BioLiP
Download all results in tab-seperated text for 1072681 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
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  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
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    # PDB
    (Resolution Å)
    Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    897801 8v2l:B (2.43) BS01 YK0 N/A GO:0000287 ... Q9NWZ3 38920289
    897802 8v2l:C (2.43) BS01 YK0 N/A GO:0000287 ... Q9NWZ3 38920289
    897803 8v2l:D (2.43) BS01 YK0 N/A GO:0000287 ... Q9NWZ3 38920289
    897804 8v2n:A (1.74) BS01 peptide 2.3.1.286 GO:0017136 ... Q9NTG7 N/A
    897805 8v2n:A (1.74) BS02 CNA 2.3.1.286 GO:0017136 ... Q9NTG7 N/A
    897806 8v2n:A (1.74) BS03 ZN 2.3.1.286 GO:0017136 ... Q9NTG7 N/A
    897807 8v2o:A (2.45) BS01 ADP 3.6.4.- GO:0005200 ... P63267 38820162
    897808 8v2o:B (2.45) BS01 ADP 3.6.4.- GO:0005200 ... P63267 38820162
    897809 8v2o:C (2.45) BS01 ADP 3.6.4.- GO:0005200 ... P63267 38820162
    897810 8v2o:D (2.45) BS01 ADP 3.6.4.- GO:0005200 ... P63267 38820162
    897811 8v2o:E (2.45) BS01 ADP 3.6.4.- GO:0005200 ... P63267 38820162
    897812 8v2t:A (1.402) BS01 XLR 5.3.1.28 GO:0005737 ... Q93UJ2 38598312
    897813 8v2t:A (1.402) BS02 ZN 5.3.1.28 GO:0005737 ... Q93UJ2 38598312
    897814 8v2y:A (2.86) BS01 FMN ? GO:0009055 ... Q6N7Y7 38417793
    897815 8v2y:B (2.86) BS01 FMN ? GO:0009055 ... Q6N7Y7 38417793
    897816 8v2z:A (2.72) BS01 ADP 3.6.4.- GO:0005200 ... P63267 38820162
    897817 8v2z:B (2.72) BS01 ADP 3.6.4.- GO:0005200 ... P63267 38820162
    897818 8v2z:C (2.72) BS01 ADP 3.6.4.- GO:0005200 ... P63267 38820162
    897819 8v2z:D (2.72) BS01 ADP 3.6.4.- GO:0005200 ... P63267 38820162
    897820 8v2z:E (2.72) BS01 ADP 3.6.4.- GO:0005200 ... P63267 38820162
    897821 8v30:A (2.54) BS01 peptide 3.6.4.- GO:0005200 ... P63267 38820162
    897822 8v30:A (2.54) BS02 ADP 3.6.4.- GO:0005200 ... P63267 38820162
    897823 8v30:B (2.54) BS01 peptide 3.6.4.- GO:0005200 ... P63267 38820162
    897824 8v30:B (2.54) BS02 peptide 3.6.4.- GO:0005200 ... P63267 38820162
    897825 8v30:B (2.54) BS03 ADP 3.6.4.- GO:0005200 ... P63267 38820162
    897826 8v30:C (2.54) BS01 peptide 3.6.4.- GO:0005200 ... P63267 38820162
    897827 8v30:C (2.54) BS02 peptide 3.6.4.- GO:0005200 ... P63267 38820162
    897828 8v30:C (2.54) BS03 ADP 3.6.4.- GO:0005200 ... P63267 38820162
    897829 8v30:D (2.54) BS01 peptide 3.6.4.- GO:0005200 ... P63267 38820162
    897830 8v30:D (2.54) BS02 peptide 3.6.4.- GO:0005200 ... P63267 38820162
    897831 8v30:D (2.54) BS03 ADP 3.6.4.- GO:0005200 ... P63267 38820162
    897832 8v30:E (2.54) BS01 peptide 3.6.4.- GO:0005200 ... P63267 38820162
    897833 8v30:E (2.54) BS02 peptide 3.6.4.- GO:0005200 ... P63267 38820162
    897834 8v30:E (2.54) BS03 ADP 3.6.4.- GO:0005200 ... P63267 38820162
    897835 8v31:A (2.65) BS01 MG N/A GO:0016787 ... A0A1Y3R144 38898276
    897836 8v31:C (2.65) BS01 MG N/A GO:0016787 ... A0A1Y3R144 38898276
    897837 8v32:J (3.01) BS01 dna N/A N/A N/A 39383864
    897838 8v32:J (3.01) BS02 dna N/A N/A N/A 39383864
    897839 8v32:J (3.01) BS03 ZN N/A N/A N/A 39383864
    897840 8v32:J (3.01) BS04 ZN N/A N/A N/A 39383864
    897841 8v32:Q (3.01) BS01 ATP N/A GO:0016887 ... A0ACD6BA40 39383864
    897842 8v32:R (3.01) BS01 ATP N/A GO:0016887 ... A0ACD6BA40 39383864
    897843 8v32:R (3.01) BS02 ATP N/A GO:0016887 ... A0ACD6BA40 39383864
    897844 8v32:S (3.01) BS01 ATP N/A GO:0016887 ... A0ACD6BA40 39383864
    897845 8v32:S (3.01) BS02 ATP N/A GO:0016887 ... A0ACD6BA40 39383864
    897846 8v32:T (3.01) BS01 ATP N/A GO:0016887 ... A0ACD6BA40 39383864
    897847 8v32:T (3.01) BS02 ATP N/A GO:0016887 ... A0ACD6BA40 39383864
    897848 8v32:U (3.01) BS01 ATP N/A GO:0016887 ... A0ACD6BA40 39383864
    897849 8v32:U (3.01) BS02 ATP N/A GO:0016887 ... A0ACD6BA40 39383864
    897850 8v32:V (3.01) BS01 ATP N/A GO:0016887 ... A0ACD6BA40 39383864
    897851 8v32:V (3.01) BS02 ATP N/A GO:0016887 ... A0ACD6BA40 39383864
    897852 8v32:W (3.01) BS01 ATP N/A GO:0016887 ... A0ACD6BA40 39383864
    897853 8v32:W (3.01) BS02 ATP N/A GO:0016887 ... A0ACD6BA40 39383864
    897854 8v35:A (1.94) BS01 ZN N/A GO:0000105 ... Q46N53 39263660
    897855 8v35:B (1.94) BS01 ZN N/A GO:0000105 ... Q46N53 39263660
    897856 8v36:A (2.235) BS01 ZN N/A GO:0000105 ... Q46N53 39263660
    897857 8v36:A (2.235) BS02 NAI N/A GO:0000105 ... Q46N53 39263660
    897858 8v36:B (2.235) BS01 NAI N/A GO:0000105 ... Q46N53 39263660
    897859 8v36:B (2.235) BS02 ZN N/A GO:0000105 ... Q46N53 39263660
    897860 8v37:A (2.228) BS01 NAD N/A GO:0000105 ... Q46N53 39263660
    897861 8v37:A (2.228) BS02 ZN N/A GO:0000105 ... Q46N53 39263660
    897862 8v37:B (2.228) BS01 ZN N/A GO:0000105 ... Q46N53 39263660
    897863 8v39:A (2.1) BS01 GNP N/A GO:0003924 ... P01116 39642212
    897864 8v39:A (2.1) BS02 Y8N N/A GO:0003924 ... P01116 39642212
    897865 8v39:B (2.1) BS01 GNP N/A GO:0003924 ... P01116 39642212
    897866 8v39:B (2.1) BS02 Y8N N/A GO:0003924 ... P01116 39642212
    897867 8v39:C (2.1) BS01 GNP N/A GO:0003924 ... P01116 39642212
    897868 8v39:C (2.1) BS02 Y8N N/A GO:0003924 ... P01116 39642212
    897869 8v3a:A (1.67) BS01 GDP N/A GO:0003924 ... P01116 39642212
    897870 8v3a:A (1.67) BS02 Y8N N/A GO:0003924 ... P01116 39642212
    897871 8v3a:B (1.67) BS01 GDP N/A GO:0003924 ... P01116 39642212
    897872 8v3a:B (1.67) BS02 Y8N N/A GO:0003924 ... P01116 39642212
    897873 8v3d:D (2.95) BS01 A1AFC N/A GO:0004984 ... A0A1S4GFY3 38870275
    897874 8v3g:E (3.1) BS01 CA N/A GO:0000785 ... P0DP29 40246884
    897875 8v3g:E (3.1) BS02 CA N/A GO:0000785 ... P0DP29 40246884
    897876 8v3g:F (3.1) BS01 CA N/A GO:0000785 ... P0DP29 40246884
    897877 8v3g:F (3.1) BS02 CA N/A GO:0000785 ... P0DP29 40246884
    897878 8v3g:G (3.1) BS01 CA N/A GO:0000785 ... P0DP29 40246884
    897879 8v3g:G (3.1) BS02 CA N/A GO:0000785 ... P0DP29 40246884
    897880 8v3g:H (3.1) BS01 CA N/A GO:0000785 ... P0DP29 40246884
    897881 8v3g:H (3.1) BS02 CA N/A GO:0000785 ... P0DP29 40246884
    897882 8v3k:A (1.47) BS01 MG 4.2.3.37 GO:0010333 ... Q9K499 38420671
    897883 8v3k:A (1.47) BS02 DPO 4.2.3.37 GO:0010333 ... Q9K499 38420671
    897884 8v3k:A (1.47) BS03 BTM 4.2.3.37 GO:0010333 ... Q9K499 38420671
    897885 8v3m:A (1.8) BS01 ZN N/A GO:0004181 ... Q8NDL9 39020174
    897886 8v3n:A (2.3) BS01 ZN N/A GO:0004181 ... Q8NDL9 39020174
    897887 8v3n:A (2.3) BS02 A1AAG N/A GO:0004181 ... Q8NDL9 39020174
    897888 8v3o:A (2.3) BS01 peptide N/A GO:0004181 ... Q8NDL9 39020174
    897889 8v3o:A (2.3) BS02 ZN N/A GO:0004181 ... Q8NDL9 39020174
    897890 8v3p:A (2.36) BS01 peptide N/A GO:0004181 ... Q8NDL9 39020174
    897891 8v3p:A (2.36) BS02 ZN N/A GO:0004181 ... Q8NDL9 39020174
    897892 8v3q:A (3.1) BS01 peptide N/A GO:0004181 ... Q8NDL9 39020174
    897893 8v3q:A (3.1) BS02 ZN N/A GO:0004181 ... Q8NDL9 39020174
    897894 8v3q:A (3.1) BS03 GLU N/A GO:0004181 ... Q8NDL9 39020174
    897895 8v3r:A (3.4) BS01 peptide N/A GO:0004181 ... Q8NDL9 39020174
    897896 8v3r:A (3.4) BS02 ZN N/A GO:0004181 ... Q8NDL9 39020174
    897897 8v3r:A (3.4) BS03 GLU N/A GO:0004181 ... Q8NDL9 39020174
    897898 8v3s:A (3.6) BS01 peptide N/A GO:0004181 ... Q8NDL9 39020174
    897899 8v3s:A (3.6) BS02 ZN N/A GO:0004181 ... Q8NDL9 39020174
    897900 8v3s:A (3.6) BS03 GLU N/A GO:0004181 ... Q8NDL9 39020174
    897901 8v3u:A (2.6) BS01 FAD N/A GO:0003995 ... Q80XL6 40537578
    897902 8v3u:A (2.6) BS02 FAD N/A GO:0003995 ... Q80XL6 40537578
    897903 8v3u:B (2.6) BS01 FAD N/A GO:0003995 ... Q80XL6 40537578
    897904 8v3u:B (2.6) BS02 FAD N/A GO:0003995 ... Q80XL6 40537578
    897905 8v3u:C (2.6) BS01 FAD N/A GO:0003995 ... Q80XL6 40537578
    897906 8v3u:C (2.6) BS02 FAD N/A GO:0003995 ... Q80XL6 40537578
    897907 8v3u:D (2.6) BS01 FAD N/A GO:0003995 ... Q80XL6 40537578
    897908 8v3u:D (2.6) BS02 FAD N/A GO:0003995 ... Q80XL6 40537578
    897909 8v3v:A (3.6) BS01 FAD N/A GO:0003995 ... Q80XL6 40537578
    897910 8v3v:B (3.6) BS01 FAD N/A GO:0003995 ... Q80XL6 40537578
    897911 8v3v:C (3.6) BS01 FAD N/A GO:0003995 ... Q80XL6 40537578
    897912 8v3v:D (3.6) BS01 FAD N/A GO:0003995 ... Q80XL6 40537578
    897913 8v3w:C (2.9) BS01 peptide N/A N/A A0A031WFB8 39152109
    897914 8v3w:H (2.9) BS01 peptide N/A N/A A0A1X9K255 39152109
    897915 8v3w:W (2.9) BS01 peptide N/A N/A A0A031WFB8 39152109
    897916 8v3w:b (2.9) BS01 peptide N/A N/A A0A1X9K255 39152109
    897917 8v3w:t (2.9) BS01 peptide N/A N/A A0A031WFB8 39152109
    897918 8v3w:x (2.9) BS01 peptide N/A N/A A0A1X9K255 39152109
    897919 8v42:B (2.3) BS01 YD9 N/A GO:0000785 ... Q99986 38780468
    897920 8v42:D (2.3) BS01 YD9 N/A GO:0000785 ... Q99986 38780468
    897921 8v45:A (3.63) BS01 ATP N/A GO:0005524 ... N/A 39112702
    897922 8v45:A (3.63) BS02 ATP N/A GO:0005524 ... N/A 39112702
    897923 8v45:B (3.63) BS01 ATP N/A GO:0005524 ... N/A 39112702
    897924 8v45:B (3.63) BS02 ATP N/A GO:0005524 ... N/A 39112702
    897925 8v45:C (3.63) BS01 ATP N/A GO:0005524 ... N/A 39112702
    897926 8v45:C (3.63) BS02 ATP N/A GO:0005524 ... N/A 39112702
    897927 8v45:F (3.63) BS01 ATP N/A GO:0005524 ... N/A 39112702
    897928 8v45:F (3.63) BS02 ATP N/A GO:0005524 ... N/A 39112702
    897929 8v46:A (3.09) BS01 ATP N/A GO:0005524 ... N/A 39112702
    897930 8v46:B (3.09) BS01 ATP N/A GO:0005524 ... N/A 39112702
    897931 8v46:B (3.09) BS02 ATP N/A GO:0005524 ... N/A 39112702
    897932 8v47:A (4.08) BS01 ATP N/A GO:0005524 ... N/A 39112702
    897933 8v47:B (4.08) BS01 ATP N/A GO:0005524 ... N/A 39112702
    897934 8v47:B (4.08) BS02 ATP N/A GO:0005524 ... N/A 39112702
    897935 8v47:C (4.08) BS01 ATP N/A GO:0005524 ... N/A 39112702
    897936 8v47:H (4.08) BS01 ATP N/A GO:0005524 ... N/A 39112702
    897937 8v47:H (4.08) BS02 ATP N/A GO:0005524 ... N/A 39112702
    897938 8v48:A (3.68) BS01 ATP N/A GO:0005524 ... N/A 39112702
    897939 8v48:B (3.68) BS01 ATP N/A GO:0005524 ... N/A 39112702
    897940 8v48:B (3.68) BS02 ATP N/A GO:0005524 ... N/A 39112702
    897941 8v48:C (3.68) BS01 ATP N/A GO:0005524 ... N/A 39112702
    897942 8v48:C (3.68) BS02 ATP N/A GO:0005524 ... N/A 39112702
    897943 8v48:F (3.68) BS01 ATP N/A GO:0005524 ... N/A 39112702
    897944 8v48:F (3.68) BS02 ATP N/A GO:0005524 ... N/A 39112702
    897945 8v48:H (3.68) BS01 ATP N/A GO:0005524 ... N/A 39112702
    897946 8v48:K (3.68) BS01 ATP N/A GO:0005524 ... N/A 39112702
    897947 8v49:A (3.62) BS01 ATP N/A GO:0005524 ... N/A 39112702
    897948 8v49:B (3.62) BS01 ATP N/A GO:0005524 ... N/A 39112702
    897949 8v4a:A (1.96) BS01 YAE 4.1.99.1 GO:0006520 ... P28796 40147499
    897950 8v4a:B (1.96) BS01 YAR 4.1.99.1 GO:0006520 ... P28796 40147499
    897951 8v4a:C (1.96) BS01 YAE 4.1.99.1 GO:0006520 ... P28796 40147499
    897952 8v4a:D (1.96) BS01 YAR 4.1.99.1 GO:0006520 ... P28796 40147499
    897953 8v4g:A (2.0) BS01 NAP ? GO:0045227 ... A0A0U3AP28 38386885
    897954 8v4g:A (2.0) BS02 CDP ? GO:0045227 ... A0A0U3AP28 38386885
    897955 8v4g:B (2.0) BS01 NAP ? GO:0045227 ... A0A0U3AP28 38386885
    897956 8v4g:B (2.0) BS02 CDP ? GO:0045227 ... A0A0U3AP28 38386885
    897957 8v4h:A (2.2) BS01 YCX ? GO:0045227 ... A0A0U3AP28 38386885
    897958 8v4h:B (2.2) BS01 YCX ? GO:0045227 ... A0A0U3AP28 38386885
    897959 8v4h:B (2.2) BS02 PO4 ? GO:0045227 ... A0A0U3AP28 38386885
    897960 8v4j:A (1.31) BS01 J7D 5.3.1.28 GO:0005737 ... Q93UJ2 38598312
    897961 8v4j:A (1.31) BS02 ZN 5.3.1.28 GO:0005737 ... Q93UJ2 38598312
    897962 8v4k:A (3.1) BS01 GTP N/A GO:0000226 ... Q2XVP4 39020174
    897963 8v4k:B (3.1) BS01 G2P N/A GO:0000226 ... P02554 39020174
    897964 8v4k:C (3.1) BS01 GTP N/A GO:0000226 ... Q2XVP4 39020174
    897965 8v4k:D (3.1) BS01 G2P N/A GO:0000226 ... P02554 39020174
    897966 8v4k:E (3.1) BS01 ZN N/A GO:0004181 ... Q8NDL9 39020174
    897967 8v4k:E (3.1) BS02 GLU N/A GO:0004181 ... Q8NDL9 39020174
    897968 8v4l:A (2.9) BS01 GTP N/A GO:0000226 ... Q2XVP4 39020174
    897969 8v4l:B (2.9) BS01 G2P N/A GO:0000226 ... P02554 39020174
    897970 8v4l:C (2.9) BS01 GTP N/A GO:0000226 ... Q2XVP4 39020174
    897971 8v4l:D (2.9) BS01 G2P N/A GO:0000226 ... P02554 39020174
    897972 8v4l:E (2.9) BS01 GLU N/A GO:0004181 ... Q8NDL9 39020174
    897973 8v4l:E (2.9) BS02 ZN N/A GO:0004181 ... Q8NDL9 39020174
    897974 8v4m:A (3.0) BS01 GTP N/A GO:0000226 ... Q2XVP4 39020174
    897975 8v4m:B (3.0) BS01 G2P N/A GO:0000226 ... P02554 39020174
    897976 8v4m:C (3.0) BS01 GTP N/A GO:0000226 ... Q2XVP4 39020174
    897977 8v4m:D (3.0) BS01 G2P N/A GO:0000226 ... P02554 39020174
    897978 8v4m:E (3.0) BS01 GLU N/A GO:0004181 ... Q8NDL9 39020174
    897979 8v4m:E (3.0) BS02 ZN N/A GO:0004181 ... Q8NDL9 39020174
    897980 8v4o:A (2.7) BS01 AMP 6.2.1.1 GO:0003987 ... Q8NJN3 N/A
    897981 8v4o:B (2.7) BS01 AMP 6.2.1.1 GO:0003987 ... Q8NJN3 N/A
    897982 8v4o:C (2.7) BS01 AMP 6.2.1.1 GO:0003987 ... Q8NJN3 N/A
    897983 8v4p:A (2.3) BS01 WPO 6.2.1.1 GO:0003987 ... Q8NJN3 N/A
    897984 8v4p:A (2.3) BS02 WPO 6.2.1.1 GO:0003987 ... Q8NJN3 N/A
    897985 8v4p:B (2.3) BS01 WPO 6.2.1.1 GO:0003987 ... Q8NJN3 N/A
    897986 8v4p:C (2.3) BS01 WPO 6.2.1.1 GO:0003987 ... Q8NJN3 N/A
    897987 8v4p:C (2.3) BS02 WPO 6.2.1.1 GO:0003987 ... Q8NJN3 N/A
    897988 8v4r:A (2.7) BS01 AMP 6.2.1.1 GO:0003987 ... Q8NJN3 39395803
    897989 8v4r:A (2.7) BS02 COA 6.2.1.1 GO:0003987 ... Q8NJN3 39395803
    897990 8v4r:B (2.7) BS01 AMP 6.2.1.1 GO:0003987 ... Q8NJN3 39395803
    897991 8v4r:B (2.7) BS02 COA 6.2.1.1 GO:0003987 ... Q8NJN3 39395803
    897992 8v4r:C (2.7) BS01 AMP 6.2.1.1 GO:0003987 ... Q8NJN3 39395803
    897993 8v4r:C (2.7) BS02 COA 6.2.1.1 GO:0003987 ... Q8NJN3 39395803
    897994 8v4s:A (2.49) BS01 GDP N/A GO:0000287 ... Q64663 39107314
    897995 8v4s:A (2.49) BS02 ZN N/A GO:0000287 ... Q64663 39107314
    897996 8v4s:A (2.49) BS03 ZN N/A GO:0000287 ... Q64663 39107314
    897997 8v4s:B (2.49) BS01 GDP N/A GO:0000287 ... Q64663 39107314
    897998 8v4s:B (2.49) BS02 ZN N/A GO:0000287 ... Q64663 39107314
    897999 8v4s:B (2.49) BS03 ZN N/A GO:0000287 ... Q64663 39107314
    898000 8v4s:C (2.49) BS01 GDP N/A GO:0000287 ... Q64663 39107314

    Reference:
  • Chengxin Zhang, Xi Zhang, Lydia Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).