SEQ2FUN

BioLiP
Download all results in tab-seperated text for 1072681 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.
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    # PDB
    (Resolution Å)
    Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    898201 8v6i:A (14.06) BS01 dna 2.7.7.7 GO:0000166 ... Q9DE46 38491139
    898202 8v6i:A (14.06) BS02 dna 2.7.7.7 GO:0000166 ... Q9DE46 38491139
    898203 8v6i:A (14.06) BS03 ZN 2.7.7.7 GO:0000166 ... Q9DE46 38491139
    898204 8v6i:A (14.06) BS04 ZN 2.7.7.7 GO:0000166 ... Q9DE46 38491139
    898205 8v6i:A (14.06) BS05 DGT 2.7.7.7 GO:0000166 ... Q9DE46 38491139
    898206 8v6i:A (14.06) BS06 MG 2.7.7.7 GO:0000166 ... Q9DE46 38491139
    898207 8v6i:C (14.06) BS01 dna ? GO:0003677 ... A0A1L8G3G3 38491139
    898208 8v6i:C (14.06) BS02 dna ? GO:0003677 ... A0A1L8G3G3 38491139
    898209 8v6i:C (14.06) BS03 SF4 ? GO:0003677 ... A0A1L8G3G3 38491139
    898210 8v6i:D (14.06) BS01 ZN 2.7.7.- GO:0003899 ... Q800A4 38491139
    898211 8v6j:A (11.11) BS01 dna 2.7.7.7 GO:0000166 ... Q9DE46 38491139
    898212 8v6j:A (11.11) BS02 dna 2.7.7.7 GO:0000166 ... Q9DE46 38491139
    898213 8v6j:A (11.11) BS03 ZN 2.7.7.7 GO:0000166 ... Q9DE46 38491139
    898214 8v6j:A (11.11) BS04 ZN 2.7.7.7 GO:0000166 ... Q9DE46 38491139
    898215 8v6j:A (11.11) BS05 DGT 2.7.7.7 GO:0000166 ... Q9DE46 38491139
    898216 8v6j:A (11.11) BS06 MG 2.7.7.7 GO:0000166 ... Q9DE46 38491139
    898217 8v6j:C (11.11) BS01 dna ? GO:0003677 ... A0A1L8G3G3 38491139
    898218 8v6j:C (11.11) BS02 dna ? GO:0003677 ... A0A1L8G3G3 38491139
    898219 8v6j:C (11.11) BS03 SF4 ? GO:0003677 ... A0A1L8G3G3 38491139
    898220 8v6j:D (11.11) BS01 ZN 2.7.7.- GO:0003899 ... Q800A4 38491139
    898221 8v6l:A (3.68) BS01 I8E ? GO:0005216 ... Q8NET8 38691614
    898222 8v6l:B (3.68) BS01 I8E ? GO:0005216 ... Q8NET8 38691614
    898223 8v6l:C (3.68) BS01 I8E ? GO:0005216 ... Q8NET8 38691614
    898224 8v6l:D (3.68) BS01 I8E ? GO:0005216 ... Q8NET8 38691614
    898225 8v6m:A (3.63) BS01 I8E ? GO:0005216 ... Q8NET8 38691614
    898226 8v6m:B (3.63) BS01 I8E ? GO:0005216 ... Q8NET8 38691614
    898227 8v6m:C (3.63) BS01 I8E ? GO:0005216 ... Q8NET8 38691614
    898228 8v6m:D (3.63) BS01 I8E ? GO:0005216 ... Q8NET8 38691614
    898229 8v6n:A (2.59) BS01 ACD ? GO:0005216 ... Q8NET8 38691614
    898230 8v6n:A (2.59) BS02 FZ4 ? GO:0005216 ... Q8NET8 38691614
    898231 8v6n:A (2.59) BS03 FZ4 ? GO:0005216 ... Q8NET8 38691614
    898232 8v6n:B (2.59) BS01 ACD ? GO:0005216 ... Q8NET8 38691614
    898233 8v6n:B (2.59) BS02 FZ4 ? GO:0005216 ... Q8NET8 38691614
    898234 8v6n:B (2.59) BS03 FZ4 ? GO:0005216 ... Q8NET8 38691614
    898235 8v6n:C (2.59) BS01 ACD ? GO:0005216 ... Q8NET8 38691614
    898236 8v6n:C (2.59) BS02 FZ4 ? GO:0005216 ... Q8NET8 38691614
    898237 8v6n:C (2.59) BS03 FZ4 ? GO:0005216 ... Q8NET8 38691614
    898238 8v6n:D (2.59) BS01 ACD ? GO:0005216 ... Q8NET8 38691614
    898239 8v6n:D (2.59) BS02 FZ4 ? GO:0005216 ... Q8NET8 38691614
    898240 8v6n:D (2.59) BS03 FZ4 ? GO:0005216 ... Q8NET8 38691614
    898241 8v6o:A (2.83) BS01 FZ4 ? GO:0005216 ... Q8NET8 38691614
    898242 8v6o:A (2.83) BS02 FZ4 ? GO:0005216 ... Q8NET8 38691614
    898243 8v6o:B (2.83) BS01 FZ4 ? GO:0005216 ... Q8NET8 38691614
    898244 8v6o:B (2.83) BS02 FZ4 ? GO:0005216 ... Q8NET8 38691614
    898245 8v6o:C (2.83) BS01 FZ4 ? GO:0005216 ... Q8NET8 38691614
    898246 8v6o:C (2.83) BS02 FZ4 ? GO:0005216 ... Q8NET8 38691614
    898247 8v6o:D (2.83) BS01 FZ4 ? GO:0005216 ... Q8NET8 38691614
    898248 8v6o:D (2.83) BS02 FZ4 ? GO:0005216 ... Q8NET8 38691614
    898249 8v6p:A (1.74) BS01 A1ACN 4.1.99.1 GO:0006520 ... P28796 39114092
    898250 8v6p:B (1.74) BS01 A1ABZ 4.1.99.1 GO:0006520 ... P28796 39114092
    898251 8v6p:C (1.74) BS01 A1ACN 4.1.99.1 GO:0006520 ... P28796 39114092
    898252 8v6p:D (1.74) BS01 A1ABZ 4.1.99.1 GO:0006520 ... P28796 39114092
    898253 8v6r:A (2.14) BS01 AR6 ? N/A A0A178STJ6 38924412
    898254 8v6r:B (2.14) BS01 AR6 ? N/A A0A178STJ6 38924412
    898255 8v6s:A (1.6) BS01 YG8 ? N/A A0A7Y5Z1U6 38924412
    898256 8v6s:B (1.6) BS01 YG8 ? N/A A0A7Y5Z1U6 38924412
    898257 8v6u:A (3.0) BS01 YEQ ? GO:0004930 ... P28223 38753765
    898258 8v6v:A (2.8) BS01 dna ? GO:0000786 ... P84233 38472177
    898259 8v6v:A (2.8) BS02 dna ? GO:0000786 ... P84233 38472177
    898260 8v6v:B (2.8) BS01 dna ? GO:0000786 ... P62799 38472177
    898261 8v6v:B (2.8) BS02 dna ? GO:0000786 ... P62799 38472177
    898262 8v6v:C (2.8) BS01 dna ? GO:0000786 ... P06897 38472177
    898263 8v6v:C (2.8) BS02 dna ? GO:0000786 ... P06897 38472177
    898264 8v6v:D (2.8) BS01 dna ? GO:0000786 ... P02281 38472177
    898265 8v6v:D (2.8) BS02 dna ? GO:0000786 ... P02281 38472177
    898266 8v6v:E (2.8) BS01 dna ? GO:0000786 ... P84233 38472177
    898267 8v6v:E (2.8) BS02 dna ? GO:0000786 ... P84233 38472177
    898268 8v6v:F (2.8) BS01 dna ? GO:0000786 ... P62799 38472177
    898269 8v6v:F (2.8) BS02 dna ? GO:0000786 ... P62799 38472177
    898270 8v6v:G (2.8) BS01 dna ? GO:0000786 ... P06897 38472177
    898271 8v6v:G (2.8) BS02 dna ? GO:0000786 ... P06897 38472177
    898272 8v6v:H (2.8) BS01 dna ? GO:0000786 ... P02281 38472177
    898273 8v6v:H (2.8) BS02 dna ? GO:0000786 ... P02281 38472177
    898274 8v6v:W (2.8) BS01 dna 3.6.4.- GO:0000183 ... O60264 38472177
    898275 8v6v:W (2.8) BS02 dna 3.6.4.- GO:0000183 ... O60264 38472177
    898276 8v6v:W (2.8) BS03 ADP 3.6.4.- GO:0000183 ... O60264 38472177
    898277 8v6v:X (2.8) BS01 dna 3.6.4.- GO:0000183 ... O60264 38472177
    898278 8v6v:X (2.8) BS02 dna 3.6.4.- GO:0000183 ... O60264 38472177
    898279 8v6v:X (2.8) BS03 ADP 3.6.4.- GO:0000183 ... O60264 38472177
    898280 8v6w:A (1.95) BS01 YHE N/A GO:0016301 ... Q8NFU5 41237254
    898281 8v6x:A (1.75) BS01 YHH N/A GO:0016301 ... Q8NFU5 41237254
    898282 8v6y:A (1.7) BS01 YHN N/A GO:0016301 ... Q8NFU5 41237254
    898283 8v6z:A (1.85) BS01 YHS N/A GO:0016301 ... Q8NFU5 41237254
    898284 8v70:A (1.85) BS01 YHW N/A GO:0016301 ... Q8NFU5 41237254
    898285 8v71:A (1.7) BS01 YI8 N/A GO:0016301 ... Q8NFU5 41237254
    898286 8v72:A (2.0) BS01 YIB N/A GO:0016301 ... Q8NFU5 41237254
    898287 8v73:A (1.9) BS01 YIG N/A GO:0016301 ... Q8NFU5 41237254
    898288 8v74:A (1.85) BS01 YJQ N/A GO:0016301 ... Q8NFU5 41237254
    898289 8v75:A (1.85) BS01 YIK N/A GO:0016301 ... Q8NFU5 41237254
    898290 8v76:A (1.9) BS01 YIU N/A GO:0016301 ... Q8NFU5 41237254
    898291 8v77:A (1.95) BS01 YJ3 N/A GO:0016301 ... Q8NFU5 41237254
    898292 8v78:A (1.96) BS01 YJB N/A GO:0016301 ... Q8NFU5 41237254
    898293 8v79:A (1.95) BS01 YJH N/A GO:0016301 ... Q8NFU5 41237254
    898294 8v7a:A (1.95) BS01 dna 2.7.7.7 GO:0003684 ... Q9Y253 38735473
    898295 8v7a:A (1.95) BS02 dna 2.7.7.7 GO:0003684 ... Q9Y253 38735473
    898296 8v7a:A (1.95) BS03 DCP 2.7.7.7 GO:0003684 ... Q9Y253 38735473
    898297 8v7a:A (1.95) BS04 CA 2.7.7.7 GO:0003684 ... Q9Y253 38735473
    898298 8v7b:A (1.9) BS01 dna 2.7.7.7 GO:0003684 ... Q9Y253 38735473
    898299 8v7b:A (1.9) BS02 dna 2.7.7.7 GO:0003684 ... Q9Y253 38735473
    898300 8v7b:A (1.9) BS03 HF4 2.7.7.7 GO:0003684 ... Q9Y253 38735473
    898301 8v7b:A (1.9) BS04 CA 2.7.7.7 GO:0003684 ... Q9Y253 38735473
    898302 8v7c:A (1.79) BS01 dna 2.7.7.7 GO:0003684 ... Q9Y253 38735473
    898303 8v7c:A (1.79) BS02 dna 2.7.7.7 GO:0003684 ... Q9Y253 38735473
    898304 8v7c:A (1.79) BS03 GTF 2.7.7.7 GO:0003684 ... Q9Y253 38735473
    898305 8v7c:A (1.79) BS04 CA 2.7.7.7 GO:0003684 ... Q9Y253 38735473
    898306 8v7d:A (1.95) BS01 dna 2.7.7.7 GO:0003684 ... Q9Y253 38735473
    898307 8v7d:A (1.95) BS02 dna 2.7.7.7 GO:0003684 ... Q9Y253 38735473
    898308 8v7d:A (1.95) BS03 CTP 2.7.7.7 GO:0003684 ... Q9Y253 38735473
    898309 8v7d:A (1.95) BS04 CA 2.7.7.7 GO:0003684 ... Q9Y253 38735473
    898310 8v7e:A (1.82) BS01 dna 2.7.7.7 GO:0003684 ... Q9Y253 38735473
    898311 8v7e:A (1.82) BS02 dna 2.7.7.7 GO:0003684 ... Q9Y253 38735473
    898312 8v7e:A (1.82) BS03 MG 2.7.7.7 GO:0003684 ... Q9Y253 38735473
    898313 8v7e:A (1.82) BS04 MG 2.7.7.7 GO:0003684 ... Q9Y253 38735473
    898314 8v7e:A (1.82) BS05 DZ4 2.7.7.7 GO:0003684 ... Q9Y253 38735473
    898315 8v7f:A (2.2) BS01 dna 2.7.7.7 GO:0003684 ... Q9Y253 38735473
    898316 8v7f:A (2.2) BS02 dna 2.7.7.7 GO:0003684 ... Q9Y253 38735473
    898317 8v7f:A (2.2) BS03 MN 2.7.7.7 GO:0003684 ... Q9Y253 38735473
    898318 8v7f:A (2.2) BS04 MN 2.7.7.7 GO:0003684 ... Q9Y253 38735473
    898319 8v7f:A (2.2) BS05 DZ4 2.7.7.7 GO:0003684 ... Q9Y253 38735473
    898320 8v7g:A (1.52) BS01 dna 2.7.7.7 GO:0003684 ... Q9Y253 38735473
    898321 8v7g:A (1.52) BS02 dna 2.7.7.7 GO:0003684 ... Q9Y253 38735473
    898322 8v7g:A (1.52) BS03 MG 2.7.7.7 GO:0003684 ... Q9Y253 38735473
    898323 8v7g:A (1.52) BS04 MG 2.7.7.7 GO:0003684 ... Q9Y253 38735473
    898324 8v7g:A (1.52) BS05 DZ4 2.7.7.7 GO:0003684 ... Q9Y253 38735473
    898325 8v7h:A (1.68) BS01 dna 2.7.7.7 GO:0003684 ... Q9Y253 38735473
    898326 8v7h:A (1.68) BS02 dna 2.7.7.7 GO:0003684 ... Q9Y253 38735473
    898327 8v7h:A (1.68) BS03 CA 2.7.7.7 GO:0003684 ... Q9Y253 38735473
    898328 8v7h:A (1.68) BS04 DTP 2.7.7.7 GO:0003684 ... Q9Y253 38735473
    898329 8v7i:A (1.72) BS01 dna 2.7.7.7 GO:0003684 ... Q9Y253 38735473
    898330 8v7i:A (1.72) BS02 dna 2.7.7.7 GO:0003684 ... Q9Y253 38735473
    898331 8v7i:A (1.72) BS03 MG 2.7.7.7 GO:0003684 ... Q9Y253 38735473
    898332 8v7i:A (1.72) BS04 MG 2.7.7.7 GO:0003684 ... Q9Y253 38735473
    898333 8v7i:A (1.72) BS05 DTP 2.7.7.7 GO:0003684 ... Q9Y253 38735473
    898334 8v7j:A (1.66) BS01 dna 2.7.7.7 GO:0003684 ... Q9Y253 38735473
    898335 8v7j:A (1.66) BS02 dna 2.7.7.7 GO:0003684 ... Q9Y253 38735473
    898336 8v7j:A (1.66) BS03 MG 2.7.7.7 GO:0003684 ... Q9Y253 38735473
    898337 8v7j:A (1.66) BS04 MG 2.7.7.7 GO:0003684 ... Q9Y253 38735473
    898338 8v7j:A (1.66) BS05 DTP 2.7.7.7 GO:0003684 ... Q9Y253 38735473
    898339 8v7k:A (1.65) BS01 dna 2.7.7.7 GO:0003684 ... Q9Y253 38735473
    898340 8v7k:A (1.65) BS02 dna 2.7.7.7 GO:0003684 ... Q9Y253 38735473
    898341 8v7k:A (1.65) BS03 MN 2.7.7.7 GO:0003684 ... Q9Y253 38735473
    898342 8v7k:A (1.65) BS04 MN 2.7.7.7 GO:0003684 ... Q9Y253 38735473
    898343 8v7k:A (1.65) BS05 DTP 2.7.7.7 GO:0003684 ... Q9Y253 38735473
    898344 8v7l:A (2.9) BS01 dna ? GO:0000786 ... P84233 38472177
    898345 8v7l:A (2.9) BS02 dna ? GO:0000786 ... P84233 38472177
    898346 8v7l:B (2.9) BS01 dna ? GO:0000786 ... P62799 38472177
    898347 8v7l:B (2.9) BS02 dna ? GO:0000786 ... P62799 38472177
    898348 8v7l:C (2.9) BS01 dna ? GO:0000786 ... P06897 38472177
    898349 8v7l:C (2.9) BS02 dna ? GO:0000786 ... P06897 38472177
    898350 8v7l:D (2.9) BS01 dna ? GO:0000786 ... P02281 38472177
    898351 8v7l:D (2.9) BS02 dna ? GO:0000786 ... P02281 38472177
    898352 8v7l:E (2.9) BS01 dna ? GO:0000786 ... P84233 38472177
    898353 8v7l:E (2.9) BS02 dna ? GO:0000786 ... P84233 38472177
    898354 8v7l:F (2.9) BS01 dna ? GO:0000786 ... P62799 38472177
    898355 8v7l:F (2.9) BS02 dna ? GO:0000786 ... P62799 38472177
    898356 8v7l:G (2.9) BS01 dna ? GO:0000786 ... P06897 38472177
    898357 8v7l:G (2.9) BS02 dna ? GO:0000786 ... P06897 38472177
    898358 8v7l:H (2.9) BS01 dna ? GO:0000786 ... P02281 38472177
    898359 8v7l:H (2.9) BS02 dna ? GO:0000786 ... P02281 38472177
    898360 8v7l:W (2.9) BS01 dna 3.6.4.- GO:0000183 ... O60264 38472177
    898361 8v7l:W (2.9) BS02 dna 3.6.4.- GO:0000183 ... O60264 38472177
    898362 8v7l:W (2.9) BS03 ADP 3.6.4.- GO:0000183 ... O60264 38472177
    898363 8v7r:A (1.41) BS01 YG9 2.1.1.56
    2.1.1.57
    2.7.7.48
    3.4.21.91
    3.6.1.15
    3.6.4.13
    GO:0004386 ... Q32ZE1 N/A
    898364 8v7r:A (1.41) BS02 YG9 2.1.1.56
    2.1.1.57
    2.7.7.48
    3.4.21.91
    3.6.1.15
    3.6.4.13
    GO:0004386 ... Q32ZE1 N/A
    898365 8v7u:A (1.82) BS01 YDU 2.1.1.56
    2.1.1.57
    2.7.7.48
    3.4.21.91
    3.6.1.15
    3.6.4.13
    GO:0004386 ... Q32ZE1 N/A
    898366 8v7z:A (3.4) BS01 MG N/A GO:0005254 ... P13569 39107303
    898367 8v7z:A (3.4) BS02 MG N/A GO:0005254 ... P13569 39107303
    898368 8v7z:A (3.4) BS03 ATP N/A GO:0005254 ... P13569 39107303
    898369 8v7z:A (3.4) BS04 ATP N/A GO:0005254 ... P13569 39107303
    898370 8v7z:A (3.4) BS05 CLR N/A GO:0005254 ... P13569 39107303
    898371 8v80:A (2.34) BS01 CA ? GO:0004888 ... P0ABE7
    P36544
    38382524
    898372 8v80:A (2.34) BS02 9Z9 ? GO:0004888 ... P0ABE7
    P36544
    38382524
    898373 8v80:A (2.34) BS03 EPJ ? GO:0004888 ... P0ABE7
    P36544
    38382524
    898374 8v80:A (2.34) BS04 YLR ? GO:0004888 ... P0ABE7
    P36544
    38382524
    898375 8v80:A (2.34) BS05 EPJ ? GO:0004888 ... P0ABE7
    P36544
    38382524
    898376 8v80:A (2.34) BS06 YLR ? GO:0004888 ... P0ABE7
    P36544
    38382524
    898377 8v80:B (2.34) BS01 EPJ ? GO:0004888 ... P0ABE7
    P36544
    38382524
    898378 8v80:B (2.34) BS02 YLR ? GO:0004888 ... P0ABE7
    P36544
    38382524
    898379 8v80:B (2.34) BS03 CA ? GO:0004888 ... P0ABE7
    P36544
    38382524
    898380 8v80:B (2.34) BS04 9Z9 ? GO:0004888 ... P0ABE7
    P36544
    38382524
    898381 8v80:B (2.34) BS05 EPJ ? GO:0004888 ... P0ABE7
    P36544
    38382524
    898382 8v80:B (2.34) BS06 YLR ? GO:0004888 ... P0ABE7
    P36544
    38382524
    898383 8v80:C (2.34) BS01 EPJ ? GO:0004888 ... P0ABE7
    P36544
    38382524
    898384 8v80:C (2.34) BS02 YLR ? GO:0004888 ... P0ABE7
    P36544
    38382524
    898385 8v80:C (2.34) BS03 CA ? GO:0004888 ... P0ABE7
    P36544
    38382524
    898386 8v80:C (2.34) BS04 9Z9 ? GO:0004888 ... P0ABE7
    P36544
    38382524
    898387 8v80:C (2.34) BS05 EPJ ? GO:0004888 ... P0ABE7
    P36544
    38382524
    898388 8v80:C (2.34) BS06 YLR ? GO:0004888 ... P0ABE7
    P36544
    38382524
    898389 8v80:D (2.34) BS01 EPJ ? GO:0004888 ... P0ABE7
    P36544
    38382524
    898390 8v80:D (2.34) BS02 YLR ? GO:0004888 ... P0ABE7
    P36544
    38382524
    898391 8v80:D (2.34) BS03 CA ? GO:0004888 ... P0ABE7
    P36544
    38382524
    898392 8v80:D (2.34) BS04 9Z9 ? GO:0004888 ... P0ABE7
    P36544
    38382524
    898393 8v80:D (2.34) BS05 EPJ ? GO:0004888 ... P0ABE7
    P36544
    38382524
    898394 8v80:D (2.34) BS06 YLR ? GO:0004888 ... P0ABE7
    P36544
    38382524
    898395 8v80:E (2.34) BS01 EPJ ? GO:0004888 ... P0ABE7
    P36544
    38382524
    898396 8v80:E (2.34) BS02 YLR ? GO:0004888 ... P0ABE7
    P36544
    38382524
    898397 8v80:E (2.34) BS03 CA ? GO:0004888 ... P0ABE7
    P36544
    38382524
    898398 8v80:E (2.34) BS04 9Z9 ? GO:0004888 ... P0ABE7
    P36544
    38382524
    898399 8v80:E (2.34) BS05 EPJ ? GO:0004888 ... P0ABE7
    P36544
    38382524
    898400 8v80:E (2.34) BS06 YLR ? GO:0004888 ... P0ABE7
    P36544
    38382524

    Reference:
  • Chengxin Zhang, Xi Zhang, Lydia Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
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