SEQ2FUN

BioLiP
Download all results in tab-seperated text for 1072681 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.
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    # PDB
    (Resolution Å)
    Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    898401 8v81:A (3.6) BS01 ATP N/A GO:0005254 ... P13569 39107303
    898402 8v81:A (3.6) BS02 ATP N/A GO:0005254 ... P13569 39107303
    898403 8v81:A (3.6) BS03 CLR N/A GO:0005254 ... P13569 39107303
    898404 8v81:A (3.6) BS04 WG5 N/A GO:0005254 ... P13569 39107303
    898405 8v82:A (2.61) BS01 CA ? GO:0004888 ... P0ABE7
    P36544
    38382524
    898406 8v82:A (2.61) BS02 9Z9 ? GO:0004888 ... P0ABE7
    P36544
    38382524
    898407 8v82:A (2.61) BS03 EPJ ? GO:0004888 ... P0ABE7
    P36544
    38382524
    898408 8v82:A (2.61) BS04 I34 ? GO:0004888 ... P0ABE7
    P36544
    38382524
    898409 8v82:A (2.61) BS05 I34 ? GO:0004888 ... P0ABE7
    P36544
    38382524
    898410 8v82:A (2.61) BS06 EPJ ? GO:0004888 ... P0ABE7
    P36544
    38382524
    898411 8v82:B (2.61) BS01 EPJ ? GO:0004888 ... P0ABE7
    P36544
    38382524
    898412 8v82:B (2.61) BS02 I34 ? GO:0004888 ... P0ABE7
    P36544
    38382524
    898413 8v82:B (2.61) BS03 CA ? GO:0004888 ... P0ABE7
    P36544
    38382524
    898414 8v82:B (2.61) BS04 9Z9 ? GO:0004888 ... P0ABE7
    P36544
    38382524
    898415 8v82:B (2.61) BS05 EPJ ? GO:0004888 ... P0ABE7
    P36544
    38382524
    898416 8v82:B (2.61) BS06 I34 ? GO:0004888 ... P0ABE7
    P36544
    38382524
    898417 8v82:C (2.61) BS01 EPJ ? GO:0004888 ... P0ABE7
    P36544
    38382524
    898418 8v82:C (2.61) BS02 I34 ? GO:0004888 ... P0ABE7
    P36544
    38382524
    898419 8v82:C (2.61) BS03 CA ? GO:0004888 ... P0ABE7
    P36544
    38382524
    898420 8v82:C (2.61) BS04 9Z9 ? GO:0004888 ... P0ABE7
    P36544
    38382524
    898421 8v82:C (2.61) BS05 EPJ ? GO:0004888 ... P0ABE7
    P36544
    38382524
    898422 8v82:C (2.61) BS06 I34 ? GO:0004888 ... P0ABE7
    P36544
    38382524
    898423 8v82:D (2.61) BS01 EPJ ? GO:0004888 ... P0ABE7
    P36544
    38382524
    898424 8v82:D (2.61) BS02 I34 ? GO:0004888 ... P0ABE7
    P36544
    38382524
    898425 8v82:D (2.61) BS03 CA ? GO:0004888 ... P0ABE7
    P36544
    38382524
    898426 8v82:D (2.61) BS04 9Z9 ? GO:0004888 ... P0ABE7
    P36544
    38382524
    898427 8v82:D (2.61) BS05 EPJ ? GO:0004888 ... P0ABE7
    P36544
    38382524
    898428 8v82:D (2.61) BS06 I34 ? GO:0004888 ... P0ABE7
    P36544
    38382524
    898429 8v82:E (2.61) BS01 I34 ? GO:0004888 ... P0ABE7
    P36544
    38382524
    898430 8v82:E (2.61) BS02 EPJ ? GO:0004888 ... P0ABE7
    P36544
    38382524
    898431 8v82:E (2.61) BS03 I34 ? GO:0004888 ... P0ABE7
    P36544
    38382524
    898432 8v82:E (2.61) BS04 CA ? GO:0004888 ... P0ABE7
    P36544
    38382524
    898433 8v82:E (2.61) BS05 9Z9 ? GO:0004888 ... P0ABE7
    P36544
    38382524
    898434 8v82:E (2.61) BS06 EPJ ? GO:0004888 ... P0ABE7
    P36544
    38382524
    898435 8v83:8 (2.53) BS01 rna ? GO:0003674 ... P36080 38632236
    898436 8v83:A (2.53) BS01 rna ? GO:0000027 ... Q08235 38632236
    898437 8v83:B (2.53) BS01 rna ? GO:0000027 ... P14126 38632236
    898438 8v83:C (2.53) BS01 rna ? GO:0002181 ... P10664 38632236
    898439 8v83:C (2.53) BS02 rna ? GO:0002181 ... P10664 38632236
    898440 8v83:D (2.53) BS01 rna 3.6.4.13 GO:0000462 ... Q03532 38632236
    898441 8v83:E (2.53) BS01 rna ? GO:0000027 ... Q02326 38632236
    898442 8v83:F (2.53) BS01 rna ? GO:0000463 ... P05737 38632236
    898443 8v83:G (2.53) BS01 rna ? GO:0000470 ... P17076 38632236
    898444 8v83:G (2.53) BS02 rna ? GO:0000470 ... P17076 38632236
    898445 8v83:H (2.53) BS01 rna ? GO:0002181 ... P05738 38632236
    898446 8v83:I (2.53) BS01 rna ? GO:0005515 ... P53136 38632236
    898447 8v83:J (2.53) BS01 rna ? GO:0000280 ... P36049 38632236
    898448 8v83:K (2.53) BS01 rna ? GO:0000463 ... P38779 38632236
    898449 8v83:L (2.53) BS01 rna ? GO:0002181 ... Q12690 38632236
    898450 8v83:L (2.53) BS02 rna ? GO:0002181 ... Q12690 38632236
    898451 8v83:M (2.53) BS01 rna ? GO:0000027 ... P36105 38632236
    898452 8v83:N (2.53) BS01 rna ? GO:0000470 ... P05748 38632236
    898453 8v83:N (2.53) BS02 rna ? GO:0000470 ... P05748 38632236
    898454 8v83:O (2.53) BS01 rna ? GO:0000470 ... P26784 38632236
    898455 8v83:P (2.53) BS01 rna ? GO:0000448 ... P05740 38632236
    898456 8v83:P (2.53) BS02 rna ? GO:0000448 ... P05740 38632236
    898457 8v83:Q (2.53) BS01 rna ? GO:0002181 ... P0CX49 38632236
    898458 8v83:R (2.53) BS01 rna ? GO:0000460 ... P10962 38632236
    898459 8v83:S (2.53) BS01 rna ? GO:0002181 ... P0CX23 38632236
    898460 8v83:V (2.53) BS01 rna ? GO:0002181 ... P0CX41 38632236
    898461 8v83:W (2.53) BS01 rna ? GO:0000027 ... P33201 38632236
    898462 8v83:Y (2.53) BS01 rna ? GO:0002181 ... P05743 38632236
    898463 8v83:Y (2.53) BS02 rna ? GO:0002181 ... P05743 38632236
    898464 8v83:Z (2.53) BS01 rna ? GO:0000027 ... P38789 38632236
    898465 8v83:a (2.53) BS01 rna ? GO:0000055 ... P0CX43 38632236
    898466 8v83:b (2.53) BS01 rna ? GO:0000054 ... Q02892 38632236
    898467 8v83:e (2.53) BS01 rna ? GO:0002181 ... P38061 38632236
    898468 8v83:f (2.53) BS01 rna ? GO:0000027 ... P05744 38632236
    898469 8v83:h (2.53) BS01 rna ? GO:0000463 ... P0CX84 38632236
    898470 8v83:h (2.53) BS02 rna ? GO:0000463 ... P0CX84 38632236
    898471 8v83:i (2.53) BS01 rna ? GO:0000470 ... P05745 38632236
    898472 8v83:j (2.53) BS01 rna ? GO:0000448 ... P49166 38632236
    898473 8v83:j (2.53) BS02 rna ? GO:0000448 ... P49166 38632236
    898474 8v83:j (2.53) BS03 ZN ? GO:0000448 ... P49166 38632236
    898475 8v83:l (2.53) BS01 rna ? GO:0000463 ... Q08962 38632236
    898476 8v83:l (2.53) BS02 peptide ? GO:0000463 ... Q08962 38632236
    898477 8v83:m (2.53) BS01 rna ? GO:0000463 ... Q04660 38632236
    898478 8v83:n (2.53) BS01 rna ? GO:0000462 ... P53261 38632236
    898479 8v83:n (2.53) BS02 rna ? GO:0000462 ... P53261 38632236
    898480 8v83:o (2.53) BS01 rna ? GO:0000463 ... P53927 38632236
    898481 8v83:q (2.53) BS01 rna 2.1.1.310 GO:0000463 ... P40991 38632236
    898482 8v83:r (2.53) BS01 rna ? GO:0000460 ... P40078 38632236
    898483 8v83:t (2.53) BS01 rna ? GO:0000463 ... P40693 38632236
    898484 8v83:t (2.53) BS02 rna ? GO:0000463 ... P40693 38632236
    898485 8v83:u (2.53) BS01 rna ? GO:0001671 ... Q07915 38632236
    898486 8v83:u (2.53) BS02 ZN ? GO:0001671 ... Q07915 38632236
    898487 8v83:v (2.53) BS01 rna ? GO:0003674 ... P40007 38632236
    898488 8v83:v (2.53) BS02 rna ? GO:0003674 ... P40007 38632236
    898489 8v83:w (2.53) BS01 rna ? GO:0003674 ... P35178 38632236
    898490 8v83:x (2.53) BS01 rna ? GO:0000055 ... P38805 38632236
    898491 8v83:y (2.53) BS01 rna ? GO:0000054 ... Q12522 38632236
    898492 8v84:3 (2.7) BS01 rna 3.6.4.13 GO:0000463 ... Q12389 38632236
    898493 8v84:8 (2.7) BS01 rna ? GO:0003674 ... P36080 38632236
    898494 8v84:A (2.7) BS01 rna ? GO:0000027 ... Q08235 38632236
    898495 8v84:B (2.7) BS01 rna ? GO:0000027 ... P14126 38632236
    898496 8v84:C (2.7) BS01 rna ? GO:0002181 ... P10664 38632236
    898497 8v84:C (2.7) BS02 rna ? GO:0002181 ... P10664 38632236
    898498 8v84:D (2.7) BS01 rna 3.6.4.13 GO:0000462 ... Q03532 38632236
    898499 8v84:E (2.7) BS01 rna ? GO:0000027 ... Q02326 38632236
    898500 8v84:F (2.7) BS01 rna ? GO:0000463 ... P05737 38632236
    898501 8v84:G (2.7) BS01 rna ? GO:0000470 ... P17076 38632236
    898502 8v84:G (2.7) BS02 rna ? GO:0000470 ... P17076 38632236
    898503 8v84:G (2.7) BS03 rna ? GO:0000470 ... P17076 38632236
    898504 8v84:H (2.7) BS01 rna ? GO:0002181 ... P05738 38632236
    898505 8v84:I (2.7) BS01 rna ? GO:0005515 ... P53136 38632236
    898506 8v84:J (2.7) BS01 rna ? GO:0000280 ... P36049 38632236
    898507 8v84:K (2.7) BS01 rna ? GO:0000463 ... P38779 38632236
    898508 8v84:L (2.7) BS01 rna ? GO:0002181 ... Q12690 38632236
    898509 8v84:L (2.7) BS02 rna ? GO:0002181 ... Q12690 38632236
    898510 8v84:M (2.7) BS01 rna ? GO:0000027 ... P36105 38632236
    898511 8v84:N (2.7) BS01 rna ? GO:0000470 ... P05748 38632236
    898512 8v84:N (2.7) BS02 rna ? GO:0000470 ... P05748 38632236
    898513 8v84:O (2.7) BS01 rna ? GO:0000470 ... P26784 38632236
    898514 8v84:P (2.7) BS01 rna ? GO:0000448 ... P05740 38632236
    898515 8v84:P (2.7) BS02 rna ? GO:0000448 ... P05740 38632236
    898516 8v84:Q (2.7) BS01 rna ? GO:0002181 ... P0CX49 38632236
    898517 8v84:R (2.7) BS01 rna ? GO:0000460 ... P10962 38632236
    898518 8v84:S (2.7) BS01 rna ? GO:0002181 ... P0CX23 38632236
    898519 8v84:V (2.7) BS01 rna ? GO:0002181 ... P0CX41 38632236
    898520 8v84:W (2.7) BS01 rna ? GO:0000027 ... P33201 38632236
    898521 8v84:Y (2.7) BS01 rna ? GO:0002181 ... P05743 38632236
    898522 8v84:Y (2.7) BS02 rna ? GO:0002181 ... P05743 38632236
    898523 8v84:Z (2.7) BS01 rna ? GO:0000027 ... P38789 38632236
    898524 8v84:a (2.7) BS01 rna ? GO:0000055 ... P0CX43 38632236
    898525 8v84:b (2.7) BS01 rna ? GO:0000054 ... Q02892 38632236
    898526 8v84:b (2.7) BS02 GDP ? GO:0000054 ... Q02892 38632236
    898527 8v84:b (2.7) BS03 MG ? GO:0000054 ... Q02892 38632236
    898528 8v84:e (2.7) BS01 rna ? GO:0002181 ... P38061 38632236
    898529 8v84:f (2.7) BS01 rna ? GO:0000027 ... P05744 38632236
    898530 8v84:h (2.7) BS01 rna ? GO:0000463 ... P0CX84 38632236
    898531 8v84:h (2.7) BS02 rna ? GO:0000463 ... P0CX84 38632236
    898532 8v84:i (2.7) BS01 rna ? GO:0000470 ... P05745 38632236
    898533 8v84:j (2.7) BS01 rna ? GO:0000448 ... P49166 38632236
    898534 8v84:j (2.7) BS02 rna ? GO:0000448 ... P49166 38632236
    898535 8v84:j (2.7) BS03 ZN ? GO:0000448 ... P49166 38632236
    898536 8v84:l (2.7) BS01 rna ? GO:0000463 ... Q08962 38632236
    898537 8v84:m (2.7) BS01 rna ? GO:0000463 ... Q04660 38632236
    898538 8v84:n (2.7) BS01 rna ? GO:0000462 ... P53261 38632236
    898539 8v84:n (2.7) BS02 rna ? GO:0000462 ... P53261 38632236
    898540 8v84:o (2.7) BS01 rna ? GO:0000463 ... P53927 38632236
    898541 8v84:q (2.7) BS01 rna 2.1.1.310 GO:0000463 ... P40991 38632236
    898542 8v84:r (2.7) BS01 rna ? GO:0000460 ... P40078 38632236
    898543 8v84:t (2.7) BS01 rna ? GO:0000463 ... P40693 38632236
    898544 8v84:t (2.7) BS02 rna ? GO:0000463 ... P40693 38632236
    898545 8v84:u (2.7) BS01 rna ? GO:0001671 ... Q07915 38632236
    898546 8v84:u (2.7) BS02 ZN ? GO:0001671 ... Q07915 38632236
    898547 8v84:v (2.7) BS01 rna ? GO:0003674 ... P40007 38632236
    898548 8v84:v (2.7) BS02 rna ? GO:0003674 ... P40007 38632236
    898549 8v84:w (2.7) BS01 rna ? GO:0003674 ... P35178 38632236
    898550 8v84:x (2.7) BS01 rna ? GO:0000055 ... P38805 38632236
    898551 8v84:y (2.7) BS01 rna ? GO:0000054 ... Q12522 38632236
    898552 8v86:A (2.47) BS01 9Z9 ? GO:0004888 ... P0ABE7
    P36544
    38382524
    898553 8v86:A (2.47) BS02 YLI ? GO:0004888 ... P0ABE7
    P36544
    38382524
    898554 8v86:A (2.47) BS03 YLI ? GO:0004888 ... P0ABE7
    P36544
    38382524
    898555 8v86:B (2.47) BS01 YLI ? GO:0004888 ... P0ABE7
    P36544
    38382524
    898556 8v86:B (2.47) BS02 9Z9 ? GO:0004888 ... P0ABE7
    P36544
    38382524
    898557 8v86:B (2.47) BS03 YLI ? GO:0004888 ... P0ABE7
    P36544
    38382524
    898558 8v86:C (2.47) BS01 YLI ? GO:0004888 ... P0ABE7
    P36544
    38382524
    898559 8v86:C (2.47) BS02 9Z9 ? GO:0004888 ... P0ABE7
    P36544
    38382524
    898560 8v86:C (2.47) BS03 YLI ? GO:0004888 ... P0ABE7
    P36544
    38382524
    898561 8v86:D (2.47) BS01 YLI ? GO:0004888 ... P0ABE7
    P36544
    38382524
    898562 8v86:D (2.47) BS02 9Z9 ? GO:0004888 ... P0ABE7
    P36544
    38382524
    898563 8v86:D (2.47) BS03 YLI ? GO:0004888 ... P0ABE7
    P36544
    38382524
    898564 8v86:E (2.47) BS01 YLI ? GO:0004888 ... P0ABE7
    P36544
    38382524
    898565 8v86:E (2.47) BS02 YLI ? GO:0004888 ... P0ABE7
    P36544
    38382524
    898566 8v86:E (2.47) BS03 9Z9 ? GO:0004888 ... P0ABE7
    P36544
    38382524
    898567 8v87:3 (2.66) BS01 rna 3.6.4.13 GO:0000463 ... Q12389 38632236
    898568 8v87:3 (2.66) BS02 ADP 3.6.4.13 GO:0000463 ... Q12389 38632236
    898569 8v87:7 (2.66) BS01 rna ? GO:0000055 ... P43586 38632236
    898570 8v87:8 (2.66) BS01 rna ? GO:0003729 ... P39744 38632236
    898571 8v87:A (2.66) BS01 rna ? GO:0000027 ... Q08235 38632236
    898572 8v87:B (2.66) BS01 rna ? GO:0000027 ... P14126 38632236
    898573 8v87:C (2.66) BS01 rna ? GO:0002181 ... P10664 38632236
    898574 8v87:C (2.66) BS02 rna ? GO:0002181 ... P10664 38632236
    898575 8v87:D (2.66) BS01 rna 3.6.4.13 GO:0000462 ... Q03532 38632236
    898576 8v87:E (2.66) BS01 rna ? GO:0000027 ... Q02326 38632236
    898577 8v87:F (2.66) BS01 rna ? GO:0000463 ... P05737 38632236
    898578 8v87:G (2.66) BS01 rna ? GO:0000470 ... P17076 38632236
    898579 8v87:G (2.66) BS02 rna ? GO:0000470 ... P17076 38632236
    898580 8v87:G (2.66) BS03 rna ? GO:0000470 ... P17076 38632236
    898581 8v87:H (2.66) BS01 rna ? GO:0002181 ... P05738 38632236
    898582 8v87:I (2.66) BS01 rna ? GO:0003682 ... Q07896 38632236
    898583 8v87:J (2.66) BS01 rna ? GO:0000280 ... P36049 38632236
    898584 8v87:K (2.66) BS01 rna ? GO:0000463 ... P38779 38632236
    898585 8v87:L (2.66) BS01 rna ? GO:0002181 ... Q12690 38632236
    898586 8v87:L (2.66) BS02 rna ? GO:0002181 ... Q12690 38632236
    898587 8v87:M (2.66) BS01 rna ? GO:0000027 ... P36105 38632236
    898588 8v87:N (2.66) BS01 rna ? GO:0000470 ... P05748 38632236
    898589 8v87:N (2.66) BS02 rna ? GO:0000470 ... P05748 38632236
    898590 8v87:O (2.66) BS01 rna ? GO:0000470 ... P26784 38632236
    898591 8v87:P (2.66) BS01 rna ? GO:0000448 ... P05740 38632236
    898592 8v87:P (2.66) BS02 rna ? GO:0000448 ... P05740 38632236
    898593 8v87:Q (2.66) BS01 rna ? GO:0002181 ... P0CX49 38632236
    898594 8v87:R (2.66) BS01 rna ? GO:0002181 ... P0CX82 38632236
    898595 8v87:S (2.66) BS01 rna ? GO:0002181 ... P0CX23 38632236
    898596 8v87:U (2.66) BS01 rna ? GO:0002181 ... P05749 38632236
    898597 8v87:V (2.66) BS01 rna ? GO:0002181 ... P0CX41 38632236
    898598 8v87:W (2.66) BS01 rna ? GO:0000027 ... P33201 38632236
    898599 8v87:X (2.66) BS01 rna ? GO:0000027 ... P04456 38632236
    898600 8v87:X (2.66) BS02 rna ? GO:0000027 ... P04456 38632236

    Reference:
  • Chengxin Zhang, Xi Zhang, Lydia Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).