SEQ2FUN

BioLiP
Download all results in tab-seperated text for 1072681 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
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  • Hover over EC number to view the full name of enzymatic activity.
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    # PDB
    (Resolution Å)
    Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    899001 8v9l:n (3.0) BS01 rna ? GO:0003735 ... A0QSG2 38355796
    899002 8v9l:o (3.0) BS01 rna ? GO:0003735 ... A0QVQ3 38355796
    899003 8v9l:o (3.0) BS02 rna ? GO:0003735 ... A0QVQ3 38355796
    899004 8v9l:p (3.0) BS01 rna ? GO:0003735 ... A0QV37 38355796
    899005 8v9l:q (3.0) BS01 rna ? GO:0003735 ... A0QSE0 38355796
    899006 8v9l:r (3.0) BS01 rna ? GO:0003735 ... A0R7F7 38355796
    899007 8v9l:s (3.0) BS01 rna ? GO:0000028 ... A0QSD5 38355796
    899008 8v9l:t (3.0) BS01 rna ? GO:0003723 ... A0R102 38355796
    899009 8v9l:u (3.0) BS01 rna N/A N/A A0QR10 38355796
    899010 8v9l:u (3.0) BS02 rna N/A N/A A0QR10 38355796
    899011 8v9l:x (3.0) BS01 rna ? GO:0000287 ... A0QS98 38355796
    899012 8v9l:x (3.0) BS02 GDP ? GO:0000287 ... A0QS98 38355796
    899013 8v9l:z (3.0) BS01 rna ? N/A A0QRI6 38355796
    899014 8v9l:z (3.0) BS02 rna ? N/A A0QRI6 38355796
    899015 8v9m:A (1.61) BS01 YR5 2.6.1.13 GO:0004587 ... P04181 38630468
    899016 8v9m:B (1.61) BS01 YR5 2.6.1.13 GO:0004587 ... P04181 38630468
    899017 8v9m:C (1.61) BS01 YR5 2.6.1.13 GO:0004587 ... P04181 38630468
    899018 8v9n:F (1.78) BS01 dna N/A GO:0003700 ... P17947 39297050
    899019 8v9n:F (1.78) BS02 dna N/A GO:0003700 ... P17947 39297050
    899020 8v9p:A (1.85) BS01 YQK 4.1.99.1 GO:0006520 ... P28796 39114092
    899021 8v9p:B (1.85) BS01 YQK 4.1.99.1 GO:0006520 ... P28796 39114092
    899022 8v9p:C (1.85) BS01 YQK 4.1.99.1 GO:0006520 ... P28796 39114092
    899023 8v9p:D (1.85) BS01 YQK 4.1.99.1 GO:0006520 ... P28796 39114092
    899024 8v9q:A (2.29) BS01 peptide 2.4.1.41 GO:0004653 ... O08912 38416819
    899025 8v9q:A (2.29) BS02 peptide 2.4.1.41 GO:0004653 ... O08912 38416819
    899026 8v9q:A (2.29) BS03 UDP 2.4.1.41 GO:0004653 ... O08912 38416819
    899027 8v9q:A (2.29) BS04 MN 2.4.1.41 GO:0004653 ... O08912 38416819
    899028 8v9q:B (2.29) BS01 peptide 2.4.1.41 GO:0004653 ... O08912 38416819
    899029 8v9q:B (2.29) BS02 UDP 2.4.1.41 GO:0004653 ... O08912 38416819
    899030 8v9q:B (2.29) BS03 MN 2.4.1.41 GO:0004653 ... O08912 38416819
    899031 8v9r:A (2.8) BS01 ATP N/A GO:0005524 ... P0A6H1 39516482
    899032 8v9r:B (2.8) BS01 ATP N/A GO:0005524 ... P0A6H1 39516482
    899033 8v9r:C (2.8) BS01 ATP N/A GO:0005524 ... P0A6H1 39516482
    899034 8v9r:C (2.8) BS02 MG N/A GO:0005524 ... P0A6H1 39516482
    899035 8v9r:D (2.8) BS01 ATP N/A GO:0005524 ... P0A6H1 39516482
    899036 8v9r:D (2.8) BS02 ADP N/A GO:0005524 ... P0A6H1 39516482
    899037 8v9r:E (2.8) BS01 ADP N/A GO:0005524 ... P0A6H1 39516482
    899038 8v9r:F (2.8) BS01 ADP N/A GO:0005524 ... P0A6H1 39516482
    899039 8v9r:S (2.8) BS01 MTX N/A GO:0004146 ... P0ABQ4 39516482
    899040 8v9t:A (2.84) BS01 ADP N/A GO:0003678 ... P0ACB0 41312769
    899041 8v9t:A (2.84) BS02 MG N/A GO:0003678 ... P0ACB0 41312769
    899042 8v9t:C (2.84) BS01 ADP N/A GO:0003678 ... P0ACB0 41312769
    899043 8v9t:D (2.84) BS01 ADP N/A GO:0003678 ... P0ACB0 41312769
    899044 8v9t:D (2.84) BS02 MG N/A GO:0003678 ... P0ACB0 41312769
    899045 8v9t:E (2.84) BS01 ADP N/A GO:0003678 ... P0ACB0 41312769
    899046 8v9t:E (2.84) BS02 MG N/A GO:0003678 ... P0ACB0 41312769
    899047 8v9t:F (2.84) BS01 ADP N/A GO:0003678 ... P0ACB0 41312769
    899048 8v9w:A (1.68) BS01 7V7 N/A N/A N/A 38945452
    899049 8v9w:B (1.68) BS01 7V7 N/A N/A N/A 38945452
    899050 8v9w:C (1.68) BS01 7V7 N/A N/A N/A 38945452
    899051 8v9w:D (1.68) BS01 7V7 N/A N/A N/A 38945452
    899052 8v9x:A (1.55) BS01 7V7 N/A N/A N/A 38945452
    899053 8v9z:A (1.6) BS01 7V7 N/A N/A N/A 38945452
    899054 8va0:A (1.85) BS01 7V7 N/A N/A N/A 38945452
    899055 8va0:B (1.85) BS01 7V7 N/A N/A N/A 38945452
    899056 8va1:A (3.4) BS01 V2V 2.7.8.14 GO:0005886 ... Q2G1B8 38416829
    899057 8va1:B (3.4) BS01 V2V 2.7.8.14 GO:0005886 ... Q2G1B8 38416829
    899058 8va1:C (3.4) BS01 V2V 2.7.8.14 GO:0005886 ... Q2G1B8 38416829
    899059 8va1:D (3.4) BS01 V2V 2.7.8.14 GO:0005886 ... Q2G1B8 38416829
    899060 8va2:a (4.5) BS01 GTP 3.6.5.- GO:0000226 ... P68363 38609661
    899061 8va2:a (4.5) BS02 MG 3.6.5.- GO:0000226 ... P68363 38609661
    899062 8va2:b (4.5) BS01 GTP 3.6.5.- GO:0000226 ... P68363 38609661
    899063 8va2:g (4.5) BS01 GDP ? GO:0000070 ... P23258 38609661
    899064 8va2:h (4.5) BS01 GDP ? GO:0000070 ... P23258 38609661
    899065 8va3:A (1.8) BS01 MG N/A GO:0004553 ... N/A 39397008
    899066 8va3:B (1.8) BS01 MG N/A GO:0004553 ... N/A 39397008
    899067 8va4:A (1.96) BS01 CA N/A GO:0004553 ... N/A 39397008
    899068 8va5:A (1.3) BS01 K5O N/A GO:0005634 ... O00255 39362248
    899069 8va6:A (1.57) BS01 K5O N/A GO:0005634 ... O00255 39362248
    899070 8va9:A (2.35) BS01 FE2 N/A GO:0005576 ... O84616 39471288
    899071 8va9:A (2.35) BS02 MN N/A GO:0005576 ... O84616 39471288
    899072 8va9:B (2.35) BS01 FE2 N/A GO:0005576 ... O84616 39471288
    899073 8va9:B (2.35) BS02 MN N/A GO:0005576 ... O84616 39471288
    899074 8vaa:A (3.58) BS01 ADP N/A GO:0001725 ... P68138 N/A
    899075 8vaa:B (3.58) BS01 ADP N/A GO:0001725 ... P68138 N/A
    899076 8vaa:C (3.58) BS01 ADP N/A GO:0001725 ... P68138 N/A
    899077 8vaa:D (3.58) BS01 ADP N/A GO:0001725 ... P68138 N/A
    899078 8vaa:E (3.58) BS01 ADP N/A GO:0001725 ... P68138 N/A
    899079 8vaa:F (3.58) BS01 ADP N/A GO:0001725 ... P68138 N/A
    899080 8vaa:G (3.58) BS01 ADP N/A GO:0001725 ... P68138 N/A
    899081 8vaa:H (3.58) BS01 ADP N/A GO:0001725 ... P68138 N/A
    899082 8vaa:I (3.58) BS01 ADP N/A GO:0001725 ... P68138 N/A
    899083 8vaa:J (3.58) BS01 ADP N/A GO:0001725 ... P68138 N/A
    899084 8vab:A (2.65) BS01 FE2 N/A GO:0005576 ... O84616 39471288
    899085 8vab:A (2.65) BS02 FE2 N/A GO:0005576 ... O84616 39471288
    899086 8vac:A (3.4) BS01 9TP N/A GO:0003677 ... P02768 38852682
    899087 8vae:A (3.7) BS01 SAL N/A GO:0003677 ... P02768 38852682
    899088 8vae:A (3.7) BS02 SAL N/A GO:0003677 ... P02768 38852682
    899089 8vae:A (3.7) BS03 SAL N/A GO:0003677 ... P02768 38852682
    899090 8vag:A (2.61) BS01 MN N/A GO:0005576 ... O84616 39471288
    899091 8vag:A (2.61) BS02 MN N/A GO:0005576 ... O84616 39471288
    899092 8vag:B (2.61) BS01 MN N/A GO:0005576 ... O84616 39471288
    899093 8vag:B (2.61) BS02 MN N/A GO:0005576 ... O84616 39471288
    899094 8vah:A (3.15) BS01 rna N/A GO:0000175 ... P05055 39495922
    899095 8vah:A (3.15) BS02 rna N/A GO:0000175 ... P05055 39495922
    899096 8vah:A (3.15) BS03 MG N/A GO:0000175 ... P05055 39495922
    899097 8vah:B (3.15) BS01 rna N/A GO:0000175 ... P05055 39495922
    899098 8vah:B (3.15) BS02 rna N/A GO:0000175 ... P05055 39495922
    899099 8vah:C (3.15) BS01 rna N/A GO:0000175 ... P05055 39495922
    899100 8vah:C (3.15) BS02 rna N/A GO:0000175 ... P05055 39495922
    899101 8vah:C (3.15) BS03 MG N/A GO:0000175 ... P05055 39495922
    899102 8vaj:A (3.45) BS01 rna N/A GO:0000794 ... Q9H9G7 39368090
    899103 8vaj:A (3.45) BS02 rna N/A GO:0000794 ... Q9H9G7 39368090
    899104 8vak:A (3.3) BS01 rna N/A GO:0000175 ... P05055 39495922
    899105 8vak:A (3.3) BS02 rna N/A GO:0000175 ... P05055 39495922
    899106 8vak:B (3.3) BS01 rna N/A GO:0000175 ... P05055 39495922
    899107 8vak:B (3.3) BS02 rna N/A GO:0000175 ... P05055 39495922
    899108 8vak:C (3.3) BS01 rna N/A GO:0000175 ... P05055 39495922
    899109 8vak:C (3.3) BS02 rna N/A GO:0000175 ... P05055 39495922
    899110 8val:A (3.7) BS01 dna 2.7.7.7 GO:0003677 ... P28630 38490435
    899111 8val:B (3.7) BS01 dna 2.7.7.7 GO:0003677 ... P06710 38490435
    899112 8val:B (3.7) BS02 ADP 2.7.7.7 GO:0003677 ... P06710 38490435
    899113 8val:C (3.7) BS01 dna 2.7.7.7 GO:0003677 ... P06710 38490435
    899114 8val:C (3.7) BS02 ZN 2.7.7.7 GO:0003677 ... P06710 38490435
    899115 8val:C (3.7) BS03 ADP 2.7.7.7 GO:0003677 ... P06710 38490435
    899116 8val:C (3.7) BS04 BEF 2.7.7.7 GO:0003677 ... P06710 38490435
    899117 8val:C (3.7) BS05 MG 2.7.7.7 GO:0003677 ... P06710 38490435
    899118 8val:D (3.7) BS01 dna 2.7.7.7 GO:0003677 ... P06710 38490435
    899119 8val:D (3.7) BS02 BEF 2.7.7.7 GO:0003677 ... P06710 38490435
    899120 8val:D (3.7) BS03 ZN 2.7.7.7 GO:0003677 ... P06710 38490435
    899121 8val:D (3.7) BS04 ADP 2.7.7.7 GO:0003677 ... P06710 38490435
    899122 8val:E (3.7) BS01 dna 2.7.7.7 GO:0003677 ... P28631 38490435
    899123 8val:E (3.7) BS02 ZN 2.7.7.7 GO:0003677 ... P28631 38490435
    899124 8vam:B (3.9) BS01 ZN 2.7.7.7 GO:0003677 ... P06710 38490435
    899125 8vam:B (3.9) BS02 ADP 2.7.7.7 GO:0003677 ... P06710 38490435
    899126 8vam:B (3.9) BS03 BEF 2.7.7.7 GO:0003677 ... P06710 38490435
    899127 8vam:B (3.9) BS04 MG 2.7.7.7 GO:0003677 ... P06710 38490435
    899128 8vam:C (3.9) BS01 ADP 2.7.7.7 GO:0003677 ... P06710 38490435
    899129 8vam:C (3.9) BS02 BEF 2.7.7.7 GO:0003677 ... P06710 38490435
    899130 8vam:C (3.9) BS03 ZN 2.7.7.7 GO:0003677 ... P06710 38490435
    899131 8vam:D (3.9) BS01 BEF 2.7.7.7 GO:0003677 ... P06710 38490435
    899132 8vam:D (3.9) BS02 ADP 2.7.7.7 GO:0003677 ... P06710 38490435
    899133 8vam:D (3.9) BS03 BEF 2.7.7.7 GO:0003677 ... P06710 38490435
    899134 8vam:D (3.9) BS04 ZN 2.7.7.7 GO:0003677 ... P06710 38490435
    899135 8vam:E (3.9) BS01 ZN 2.7.7.7 GO:0003677 ... P28631 38490435
    899136 8vap:B (3.0) BS01 ADP 2.7.7.7 GO:0003677 ... P06710 38490435
    899137 8vap:B (3.0) BS02 BEF 2.7.7.7 GO:0003677 ... P06710 38490435
    899138 8vap:B (3.0) BS03 ZN 2.7.7.7 GO:0003677 ... P06710 38490435
    899139 8vap:C (3.0) BS01 ADP 2.7.7.7 GO:0003677 ... P06710 38490435
    899140 8vap:C (3.0) BS02 ZN 2.7.7.7 GO:0003677 ... P06710 38490435
    899141 8vap:C (3.0) BS03 BEF 2.7.7.7 GO:0003677 ... P06710 38490435
    899142 8vap:D (3.0) BS01 BEF 2.7.7.7 GO:0003677 ... P06710 38490435
    899143 8vap:D (3.0) BS02 ADP 2.7.7.7 GO:0003677 ... P06710 38490435
    899144 8vap:D (3.0) BS03 BEF 2.7.7.7 GO:0003677 ... P06710 38490435
    899145 8vap:D (3.0) BS04 MG 2.7.7.7 GO:0003677 ... P06710 38490435
    899146 8vap:D (3.0) BS05 ZN 2.7.7.7 GO:0003677 ... P06710 38490435
    899147 8vap:E (3.0) BS01 ZN 2.7.7.7 GO:0003677 ... P28631 38490435
    899148 8vaq:A (3.8) BS01 dna 2.7.7.7 GO:0003677 ... P28630 38490435
    899149 8vaq:A (3.8) BS02 dna 2.7.7.7 GO:0003677 ... P28630 38490435
    899150 8vaq:B (3.8) BS01 dna 2.7.7.7 GO:0003677 ... P06710 38490435
    899151 8vaq:B (3.8) BS02 ADP 2.7.7.7 GO:0003677 ... P06710 38490435
    899152 8vaq:B (3.8) BS03 MG 2.7.7.7 GO:0003677 ... P06710 38490435
    899153 8vaq:B (3.8) BS04 BEF 2.7.7.7 GO:0003677 ... P06710 38490435
    899154 8vaq:C (3.8) BS01 dna 2.7.7.7 GO:0003677 ... P06710 38490435
    899155 8vaq:C (3.8) BS02 ADP 2.7.7.7 GO:0003677 ... P06710 38490435
    899156 8vaq:C (3.8) BS03 BEF 2.7.7.7 GO:0003677 ... P06710 38490435
    899157 8vaq:D (3.8) BS01 dna 2.7.7.7 GO:0003677 ... P06710 38490435
    899158 8vaq:D (3.8) BS02 ADP 2.7.7.7 GO:0003677 ... P06710 38490435
    899159 8vaq:D (3.8) BS03 BEF 2.7.7.7 GO:0003677 ... P06710 38490435
    899160 8vaq:D (3.8) BS04 MG 2.7.7.7 GO:0003677 ... P06710 38490435
    899161 8vaq:D (3.8) BS05 ZN 2.7.7.7 GO:0003677 ... P06710 38490435
    899162 8vaq:E (3.8) BS01 dna 2.7.7.7 GO:0003677 ... P28631 38490435
    899163 8vaq:E (3.8) BS02 ZN 2.7.7.7 GO:0003677 ... P28631 38490435
    899164 8var:A (3.9) BS01 dna 2.7.7.7 GO:0003677 ... P28630 38490435
    899165 8var:B (3.9) BS01 dna 2.7.7.7 GO:0003677 ... P06710 38490435
    899166 8var:B (3.9) BS02 ZN 2.7.7.7 GO:0003677 ... P06710 38490435
    899167 8var:B (3.9) BS03 ADP 2.7.7.7 GO:0003677 ... P06710 38490435
    899168 8var:B (3.9) BS04 BEF 2.7.7.7 GO:0003677 ... P06710 38490435
    899169 8var:C (3.9) BS01 dna 2.7.7.7 GO:0003677 ... P06710 38490435
    899170 8var:C (3.9) BS02 ZN 2.7.7.7 GO:0003677 ... P06710 38490435
    899171 8var:C (3.9) BS03 ADP 2.7.7.7 GO:0003677 ... P06710 38490435
    899172 8var:C (3.9) BS04 BEF 2.7.7.7 GO:0003677 ... P06710 38490435
    899173 8var:D (3.9) BS01 dna 2.7.7.7 GO:0003677 ... P06710 38490435
    899174 8var:D (3.9) BS02 ZN 2.7.7.7 GO:0003677 ... P06710 38490435
    899175 8var:D (3.9) BS03 ADP 2.7.7.7 GO:0003677 ... P06710 38490435
    899176 8var:D (3.9) BS04 BEF 2.7.7.7 GO:0003677 ... P06710 38490435
    899177 8var:D (3.9) BS05 MG 2.7.7.7 GO:0003677 ... P06710 38490435
    899178 8var:E (3.9) BS01 dna 2.7.7.7 GO:0003677 ... P28631 38490435
    899179 8var:E (3.9) BS02 ZN 2.7.7.7 GO:0003677 ... P28631 38490435
    899180 8var:G (3.9) BS01 dna ? GO:0003677 ... P0A988 38490435
    899181 8vas:A (3.8) BS01 dna 2.7.7.7 GO:0003677 ... P28630 38490435
    899182 8vas:B (3.8) BS01 dna 2.7.7.7 GO:0003677 ... P06710 38490435
    899183 8vas:B (3.8) BS02 ZN 2.7.7.7 GO:0003677 ... P06710 38490435
    899184 8vas:B (3.8) BS03 ADP 2.7.7.7 GO:0003677 ... P06710 38490435
    899185 8vas:B (3.8) BS04 BEF 2.7.7.7 GO:0003677 ... P06710 38490435
    899186 8vas:C (3.8) BS01 dna 2.7.7.7 GO:0003677 ... P06710 38490435
    899187 8vas:C (3.8) BS02 ZN 2.7.7.7 GO:0003677 ... P06710 38490435
    899188 8vas:C (3.8) BS03 ADP 2.7.7.7 GO:0003677 ... P06710 38490435
    899189 8vas:C (3.8) BS04 BEF 2.7.7.7 GO:0003677 ... P06710 38490435
    899190 8vas:D (3.8) BS01 dna 2.7.7.7 GO:0003677 ... P06710 38490435
    899191 8vas:D (3.8) BS02 ADP 2.7.7.7 GO:0003677 ... P06710 38490435
    899192 8vas:D (3.8) BS03 BEF 2.7.7.7 GO:0003677 ... P06710 38490435
    899193 8vas:E (3.8) BS01 dna 2.7.7.7 GO:0003677 ... P28631 38490435
    899194 8vas:E (3.8) BS02 ZN 2.7.7.7 GO:0003677 ... P28631 38490435
    899195 8vat:A (3.2) BS01 dna 2.7.7.7 GO:0003677 ... P28630 38490435
    899196 8vat:B (3.2) BS01 dna 2.7.7.7 GO:0003677 ... P06710 38490435
    899197 8vat:B (3.2) BS02 ZN 2.7.7.7 GO:0003677 ... P06710 38490435
    899198 8vat:B (3.2) BS03 ADP 2.7.7.7 GO:0003677 ... P06710 38490435
    899199 8vat:B (3.2) BS04 BEF 2.7.7.7 GO:0003677 ... P06710 38490435
    899200 8vat:C (3.2) BS01 dna 2.7.7.7 GO:0003677 ... P06710 38490435

    Reference:
  • Chengxin Zhang, Xi Zhang, Lydia Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).