SEQ2FUN

BioLiP
Download all results in tab-seperated text for 1072681 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
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  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.
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    # PDB
    (Resolution Å)
    Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    899201 8vat:C (3.2) BS02 ZN 2.7.7.7 GO:0003677 ... P06710 38490435
    899202 8vat:C (3.2) BS03 ADP 2.7.7.7 GO:0003677 ... P06710 38490435
    899203 8vat:C (3.2) BS04 BEF 2.7.7.7 GO:0003677 ... P06710 38490435
    899204 8vat:D (3.2) BS01 dna 2.7.7.7 GO:0003677 ... P06710 38490435
    899205 8vat:D (3.2) BS02 ADP 2.7.7.7 GO:0003677 ... P06710 38490435
    899206 8vat:D (3.2) BS03 BEF 2.7.7.7 GO:0003677 ... P06710 38490435
    899207 8vat:D (3.2) BS04 MG 2.7.7.7 GO:0003677 ... P06710 38490435
    899208 8vat:E (3.2) BS01 dna 2.7.7.7 GO:0003677 ... P28631 38490435
    899209 8vat:E (3.2) BS02 ZN 2.7.7.7 GO:0003677 ... P28631 38490435
    899210 8vau:A (2.1) BS01 NNR N/A GO:0061809 ... P28907 39610739
    899211 8vau:A (2.1) BS02 RIB N/A GO:0061809 ... P28907 39610739
    899212 8vau:B (2.1) BS01 NNR N/A GO:0061809 ... P28907 39610739
    899213 8vau:B (2.1) BS02 RIB N/A GO:0061809 ... P28907 39610739
    899214 8vav:A (3.13) BS01 AJP N/A GO:0005216 ... Q12791 N/A
    899215 8vav:A (3.13) BS02 AJP N/A GO:0005216 ... Q12791 N/A
    899216 8vav:A (3.13) BS03 AJP N/A GO:0005216 ... Q12791 N/A
    899217 8vav:A (3.13) BS04 AJP N/A GO:0005216 ... Q12791 N/A
    899218 8vav:A (3.13) BS05 CLR N/A GO:0005216 ... Q12791 N/A
    899219 8vav:A (3.13) BS06 AJP N/A GO:0005216 ... Q12791 N/A
    899220 8vav:B (3.13) BS01 AJP N/A GO:0005216 ... Q12791 N/A
    899221 8vav:B (3.13) BS02 AJP N/A GO:0005216 ... Q12791 N/A
    899222 8vav:B (3.13) BS03 AJP N/A GO:0005216 ... Q12791 N/A
    899223 8vav:B (3.13) BS04 AJP N/A GO:0005216 ... Q12791 N/A
    899224 8vav:B (3.13) BS05 AJP N/A GO:0005216 ... Q12791 N/A
    899225 8vav:B (3.13) BS06 CLR N/A GO:0005216 ... Q12791 N/A
    899226 8vav:B (3.13) BS07 AJP N/A GO:0005216 ... Q12791 N/A
    899227 8vav:C (3.13) BS01 AJP N/A GO:0005216 ... Q12791 N/A
    899228 8vav:C (3.13) BS02 AJP N/A GO:0005216 ... Q12791 N/A
    899229 8vav:C (3.13) BS03 AJP N/A GO:0005216 ... Q12791 N/A
    899230 8vav:C (3.13) BS04 AJP N/A GO:0005216 ... Q12791 N/A
    899231 8vav:C (3.13) BS05 AJP N/A GO:0005216 ... Q12791 N/A
    899232 8vav:C (3.13) BS06 CLR N/A GO:0005216 ... Q12791 N/A
    899233 8vav:C (3.13) BS07 AJP N/A GO:0005216 ... Q12791 N/A
    899234 8vav:D (3.13) BS01 AJP N/A GO:0005216 ... Q12791 N/A
    899235 8vav:D (3.13) BS02 AJP N/A GO:0005216 ... Q12791 N/A
    899236 8vav:D (3.13) BS03 AJP N/A GO:0005216 ... Q12791 N/A
    899237 8vav:D (3.13) BS04 AJP N/A GO:0005216 ... Q12791 N/A
    899238 8vav:D (3.13) BS05 AJP N/A GO:0005216 ... Q12791 N/A
    899239 8vav:D (3.13) BS06 AJP N/A GO:0005216 ... Q12791 N/A
    899240 8vav:D (3.13) BS07 CLR N/A GO:0005216 ... Q12791 N/A
    899241 8vb1:A (1.3) BS01 A1AAD ? GO:0004190 ... P03367 38380945
    899242 8vb1:B (1.3) BS01 A1AAD ? GO:0004190 ... P03367 38380945
    899243 8vb5:A (1.48) BS01 A1AAC N/A GO:0004672 ... P04626 N/A
    899244 8vb6:A (2.7) BS01 dna N/A GO:0003676 ... P03366 39632888
    899245 8vb7:A (2.5) BS01 dna N/A GO:0003676 ... P03366 39632888
    899246 8vb7:A (2.5) BS02 MG N/A GO:0003676 ... P03366 39632888
    899247 8vb7:A (2.5) BS03 DTP N/A GO:0003676 ... P03366 39632888
    899248 8vb7:B (2.5) BS01 dna N/A GO:0003964 ... P03366 39632888
    899249 8vb8:A (3.0) BS01 dna N/A GO:0003676 ... P03366 39632888
    899250 8vb8:A (3.0) BS02 DTP N/A GO:0003676 ... P03366 39632888
    899251 8vb8:A (3.0) BS03 MG N/A GO:0003676 ... P03366 39632888
    899252 8vb9:A (2.8) BS01 dna N/A GO:0003676 ... P03366 39632888
    899253 8vb9:A (2.8) BS02 MG N/A GO:0003676 ... P03366 39632888
    899254 8vb9:A (2.8) BS03 DTP N/A GO:0003676 ... P03366 39632888
    899255 8vb9:B (2.8) BS01 dna N/A GO:0003964 ... P03366 39632888
    899256 8vba:A (3.29) BS01 BGC N/A N/A Q29XT7 N/A
    899257 8vba:A (3.29) BS02 BGC N/A N/A Q29XT7 N/A
    899258 8vba:A (3.29) BS03 BGC N/A N/A Q29XT7 N/A
    899259 8vba:A (3.29) BS04 BGC N/A N/A Q29XT7 N/A
    899260 8vba:A (3.29) BS05 BGC N/A N/A Q29XT7 N/A
    899261 8vba:A (3.29) BS06 BGC N/A N/A Q29XT7 N/A
    899262 8vba:A (3.29) BS07 BGC N/A N/A Q29XT7 N/A
    899263 8vba:A (3.29) BS08 BGC N/A N/A Q29XT7 N/A
    899264 8vba:A (3.29) BS09 BGC N/A N/A Q29XT7 N/A
    899265 8vba:A (3.29) BS10 BGC N/A N/A Q29XT7 N/A
    899266 8vba:A (3.29) BS11 BGC N/A N/A Q29XT7 N/A
    899267 8vba:A (3.29) BS12 BGC N/A N/A Q29XT7 N/A
    899268 8vba:A (3.29) BS13 BGC N/A N/A Q29XT7 N/A
    899269 8vba:A (3.29) BS14 BGC N/A N/A Q29XT7 N/A
    899270 8vba:A (3.29) BS15 BGC N/A N/A Q29XT7 N/A
    899271 8vba:A (3.29) BS16 BGC N/A N/A Q29XT7 N/A
    899272 8vba:A (3.29) BS17 BGC N/A N/A Q29XT7 N/A
    899273 8vba:A (3.29) BS18 BGC N/A N/A Q29XT7 N/A
    899274 8vba:A (3.29) BS19 BGC N/A N/A Q29XT7 N/A
    899275 8vba:A (3.29) BS20 BGC N/A N/A Q29XT7 N/A
    899276 8vba:A (3.29) BS21 BGC N/A N/A Q29XT7 N/A
    899277 8vba:A (3.29) BS22 BGC N/A N/A Q29XT7 N/A
    899278 8vba:A (3.29) BS23 BGC N/A N/A Q29XT7 N/A
    899279 8vba:A (3.29) BS24 BGC N/A N/A Q29XT7 N/A
    899280 8vba:A (3.29) BS25 BGC N/A N/A Q29XT7 N/A
    899281 8vba:A (3.29) BS26 BGC N/A N/A Q29XT7 N/A
    899282 8vba:A (3.29) BS27 BGC N/A N/A Q29XT7 N/A
    899283 8vba:H (3.29) BS01 BGC N/A N/A N/A N/A
    899284 8vbb:A (3.97) BS01 BGC N/A N/A Q29XT7 39283948
    899285 8vbb:A (3.97) BS02 BGC N/A N/A Q29XT7 39283948
    899286 8vbb:A (3.97) BS03 BGC N/A N/A Q29XT7 39283948
    899287 8vbb:A (3.97) BS04 BGC N/A N/A Q29XT7 39283948
    899288 8vbb:A (3.97) BS05 BGC N/A N/A Q29XT7 39283948
    899289 8vbb:A (3.97) BS06 BGC N/A N/A Q29XT7 39283948
    899290 8vbb:A (3.97) BS07 BGC N/A N/A Q29XT7 39283948
    899291 8vbb:A (3.97) BS08 BGC N/A N/A Q29XT7 39283948
    899292 8vbb:A (3.97) BS09 BGC N/A N/A Q29XT7 39283948
    899293 8vbb:A (3.97) BS10 BGC N/A N/A Q29XT7 39283948
    899294 8vbb:A (3.97) BS11 BGC N/A N/A Q29XT7 39283948
    899295 8vbb:A (3.97) BS12 BGC N/A N/A Q29XT7 39283948
    899296 8vbb:A (3.97) BS13 BGC N/A N/A Q29XT7 39283948
    899297 8vbb:A (3.97) BS14 BGC N/A N/A Q29XT7 39283948
    899298 8vbb:A (3.97) BS15 BGC N/A N/A Q29XT7 39283948
    899299 8vbb:A (3.97) BS16 BGC N/A N/A Q29XT7 39283948
    899300 8vbb:A (3.97) BS17 BGC N/A N/A Q29XT7 39283948
    899301 8vbb:A (3.97) BS18 BGC N/A N/A Q29XT7 39283948
    899302 8vbb:A (3.97) BS19 BGC N/A N/A Q29XT7 39283948
    899303 8vbb:A (3.97) BS20 BGC N/A N/A Q29XT7 39283948
    899304 8vbb:A (3.97) BS21 BGC N/A N/A Q29XT7 39283948
    899305 8vbb:A (3.97) BS22 BGC N/A N/A Q29XT7 39283948
    899306 8vbb:A (3.97) BS23 BGC N/A N/A Q29XT7 39283948
    899307 8vbb:A (3.97) BS24 BGC N/A N/A Q29XT7 39283948
    899308 8vbb:A (3.97) BS25 BGC N/A N/A Q29XT7 39283948
    899309 8vbb:A (3.97) BS26 BGC N/A N/A Q29XT7 39283948
    899310 8vbb:A (3.97) BS27 BGC N/A N/A Q29XT7 39283948
    899311 8vbb:A (3.97) BS28 BGC N/A N/A Q29XT7 39283948
    899312 8vbb:A (3.97) BS29 BGC N/A N/A Q29XT7 39283948
    899313 8vbb:A (3.97) BS30 BGC N/A N/A Q29XT7 39283948
    899314 8vbb:A (3.97) BS31 BGC N/A N/A Q29XT7 39283948
    899315 8vbb:A (3.97) BS32 BGC N/A N/A Q29XT7 39283948
    899316 8vbb:H (3.97) BS01 BGC N/A N/A N/A 39283948
    899317 8vbc:A (2.8) BS01 dna N/A GO:0003676 ... P03366 39632888
    899318 8vbc:A (2.8) BS02 MG N/A GO:0003676 ... P03366 39632888
    899319 8vbc:A (2.8) BS03 DTP N/A GO:0003676 ... P03366 39632888
    899320 8vbc:B (2.8) BS01 dna N/A GO:0003964 ... P03366 39632888
    899321 8vbd:A (2.7) BS01 dna N/A GO:0003676 ... P03366 39632888
    899322 8vbd:A (2.7) BS02 MG N/A GO:0003676 ... P03366 39632888
    899323 8vbd:A (2.7) BS03 DTP N/A GO:0003676 ... P03366 39632888
    899324 8vbe:A (2.6) BS01 dna N/A GO:0003676 ... P03366 39632888
    899325 8vbe:A (2.6) BS02 DTP N/A GO:0003676 ... P03366 39632888
    899326 8vbe:A (2.6) BS03 MG N/A GO:0003676 ... P03366 39632888
    899327 8vbf:A (2.8) BS01 dna N/A GO:0003676 ... P03366 39632888
    899328 8vbf:A (2.8) BS02 DTP N/A GO:0003676 ... P03366 39632888
    899329 8vbf:A (2.8) BS03 POP N/A GO:0003676 ... P03366 39632888
    899330 8vbf:A (2.8) BS04 MG N/A GO:0003676 ... P03366 39632888
    899331 8vbf:A (2.8) BS05 MG N/A GO:0003676 ... P03366 39632888
    899332 8vbg:A (2.4) BS01 dna N/A GO:0003676 ... P03366 39632888
    899333 8vbg:A (2.4) BS02 F2A N/A GO:0003676 ... P03366 39632888
    899334 8vbg:A (2.4) BS03 MG N/A GO:0003676 ... P03366 39632888
    899335 8vbg:B (2.4) BS01 dna N/A GO:0003964 ... P03366 39632888
    899336 8vbh:A (2.2) BS01 dna N/A GO:0003676 ... P03366 39632888
    899337 8vbh:A (2.2) BS02 DTP N/A GO:0003676 ... P03366 39632888
    899338 8vbh:B (2.2) BS01 dna N/A GO:0003964 ... P03366 39632888
    899339 8vbi:A (2.3) BS01 dna N/A GO:0003676 ... P03366 39632888
    899340 8vbi:A (2.3) BS02 DTP N/A GO:0003676 ... P03366 39632888
    899341 8vbi:A (2.3) BS03 MG N/A GO:0003676 ... P03366 39632888
    899342 8vbi:A (2.3) BS04 MG N/A GO:0003676 ... P03366 39632888
    899343 8vbi:B (2.3) BS01 dna N/A GO:0003964 ... P03366 39632888
    899344 8vbu:A (2.0) BS01 1S6 ? GO:0008658 ... Q2FZ94 38527711
    899345 8vbu:B (2.0) BS01 1S6 ? GO:0008658 ... Q2FZ94 38527711
    899346 8vbv:A (2.4) BS01 63U ? GO:0008658 ... Q2FZ94 38527711
    899347 8vbv:B (2.4) BS01 63U ? GO:0008658 ... Q2FZ94 38527711
    899348 8vbw:A (2.3) BS01 1RG ? GO:0008658 ... Q2FZ94 38527711
    899349 8vbw:B (2.3) BS01 1RG ? GO:0008658 ... Q2FZ94 38527711
    899350 8vby:A (3.19) BS01 42L N/A GO:0001504 ... Q01959 39112705
    899351 8vby:A (3.19) BS02 A1AAF N/A GO:0001504 ... Q01959 39112705
    899352 8vby:A (3.19) BS03 Y01 N/A GO:0001504 ... Q01959 39112705
    899353 8vby:A (3.19) BS04 Y01 N/A GO:0001504 ... Q01959 39112705
    899354 8vby:A (3.19) BS05 ZN N/A GO:0001504 ... Q01959 39112705
    899355 8vby:A (3.19) BS06 Y01 N/A GO:0001504 ... Q01959 39112705
    899356 8vc0:A (3.46) BS01 A1AAO N/A GO:0016032 ... P12497 N/A
    899357 8vc0:B (3.46) BS01 A1AAO N/A GO:0016032 ... P12497 N/A
    899358 8vc0:C (3.46) BS01 A1AAO N/A GO:0016032 ... P12497 N/A
    899359 8vc0:D (3.46) BS01 A1AAO N/A GO:0016032 ... P12497 N/A
    899360 8vc0:E (3.46) BS01 A1AAO N/A GO:0016032 ... P12497 N/A
    899361 8vc0:E (3.46) BS02 A1AAO N/A GO:0016032 ... P12497 N/A
    899362 8vc0:F (3.46) BS01 A1AAO N/A GO:0016032 ... P12497 N/A
    899363 8vc0:F (3.46) BS02 A1AAO N/A GO:0016032 ... P12497 N/A
    899364 8vc0:G (3.46) BS01 A1AAO N/A GO:0016032 ... P12497 N/A
    899365 8vc0:H (3.46) BS01 A1AAO N/A GO:0016032 ... P12497 N/A
    899366 8vc0:I (3.46) BS01 A1AAO N/A GO:0016032 ... P12497 N/A
    899367 8vc0:J (3.46) BS01 A1AAO N/A GO:0016032 ... P12497 N/A
    899368 8vc0:J (3.46) BS02 A1AAO N/A GO:0016032 ... P12497 N/A
    899369 8vc1:A (2.85) BS01 9Z9 ? GO:0001582 ... B3GTD7 38573859
    899370 8vc1:B (2.85) BS01 9Z9 ? GO:0001582 ... B3GTD7 38573859
    899371 8vc1:C (2.85) BS01 9Z9 ? GO:0001582 ... B3GTD7 38573859
    899372 8vc1:D (2.85) BS01 9Z9 ? GO:0001582 ... B3GTD7 38573859
    899373 8vc5:A (2.3) BS01 ZN 6.1.1.17 GO:0000049 ... Q9XCL6 40343997
    899374 8vc5:B (2.3) BS01 ZN 6.1.1.17 GO:0000049 ... Q9XCL6 40343997
    899375 8vc8:A (1.8) BS01 HEM N/A N/A N/A 38452047
    899376 8vc9:A (2.65) BS01 ACP N/A GO:0000155 ... Q8F424 N/A
    899377 8vc9:A (2.65) BS02 MG N/A GO:0000155 ... Q8F424 N/A
    899378 8vc9:A (2.65) BS03 BEF N/A GO:0000155 ... Q8F424 N/A
    899379 8vc9:B (2.65) BS01 ACP N/A GO:0000155 ... Q8F424 N/A
    899380 8vc9:B (2.65) BS02 MG N/A GO:0000155 ... Q8F424 N/A
    899381 8vc9:B (2.65) BS03 BEF N/A GO:0000155 ... Q8F424 N/A
    899382 8vc9:C (2.65) BS01 ACP N/A GO:0000155 ... Q8F424 N/A
    899383 8vc9:C (2.65) BS02 MG N/A GO:0000155 ... Q8F424 N/A
    899384 8vc9:C (2.65) BS03 BEF N/A GO:0000155 ... Q8F424 N/A
    899385 8vc9:D (2.65) BS01 ACP N/A GO:0000155 ... Q8F424 N/A
    899386 8vc9:D (2.65) BS02 MG N/A GO:0000155 ... Q8F424 N/A
    899387 8vc9:D (2.65) BS03 BEF N/A GO:0000155 ... Q8F424 N/A
    899388 8vc9:E (2.65) BS01 ACP N/A GO:0000155 ... Q8F424 N/A
    899389 8vc9:E (2.65) BS02 MG N/A GO:0000155 ... Q8F424 N/A
    899390 8vc9:E (2.65) BS03 BEF N/A GO:0000155 ... Q8F424 N/A
    899391 8vc9:F (2.65) BS01 ACP N/A GO:0000155 ... Q8F424 N/A
    899392 8vc9:F (2.65) BS02 MG N/A GO:0000155 ... Q8F424 N/A
    899393 8vc9:F (2.65) BS03 BEF N/A GO:0000155 ... Q8F424 N/A
    899394 8vcd:A (2.32) BS01 VTY N/A GO:0005575 ... Q9FG13 39090154
    899395 8vcg:A (1.61) BS01 PTR N/A N/A P12931 N/A
    899396 8vcj:A (3.32) BS01 ADP N/A GO:0016887 ... P05846 38834067
    899397 8vcj:B (3.32) BS01 dna N/A GO:0016887 ... P05846 38834067
    899398 8vcj:B (3.32) BS02 ADP N/A GO:0016887 ... P05846 38834067
    899399 8vcj:B (3.32) BS03 AGS N/A GO:0016887 ... P05846 38834067
    899400 8vcj:C (3.32) BS01 dna N/A GO:0016887 ... P05846 38834067

    Reference:
  • Chengxin Zhang, Xi Zhang, Lydia Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).