SEQ2FUN

BioLiP
Download all results in tab-seperated text for 1072681 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
  • Click Site # to view the binding site structure. Hover over Site # to view the binding residues.
  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.
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    # PDB
    (Resolution Å)
    Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    899801 8vft:WW (3.3) BS01 rna N/A GO:0003735 ... G1TG89 41037622
    899802 8vft:X (3.3) BS01 rna N/A GO:0003735 ... G1SE76 41037622
    899803 8vft:X (3.3) BS02 rna N/A GO:0003735 ... G1SE76 41037622
    899804 8vft:XX (3.3) BS01 rna N/A GO:0003735 ... G1SZ47 41037622
    899805 8vft:Y (3.3) BS01 rna N/A GO:0003723 ... G1SQH0 41037622
    899806 8vft:Y (3.3) BS02 rna N/A GO:0003723 ... G1SQH0 41037622
    899807 8vft:YY (3.3) BS01 rna N/A GO:0003735 ... A0A5F9CBF4 41037622
    899808 8vft:Z (3.3) BS01 rna N/A GO:0002181 ... G1TXF6 41037622
    899809 8vft:ZZ (3.3) BS01 rna N/A GO:0003735 ... G1TDB3 41037622
    899810 8vft:a (3.3) BS01 rna N/A GO:0003735 ... G1SNY0 41037622
    899811 8vft:aa (3.3) BS01 rna N/A GO:0003729 ... G1TFE8 41037622
    899812 8vft:aa (3.3) BS02 ZN N/A GO:0003729 ... G1TFE8 41037622
    899813 8vft:b (3.3) BS01 rna N/A GO:0002181 ... G1SGR6 41037622
    899814 8vft:bb (3.3) BS01 rna N/A GO:0003735 ... G1TZ76 41037622
    899815 8vft:c (3.3) BS01 rna N/A GO:0003723 ... G1TDL2 41037622
    899816 8vft:cc (3.3) BS01 rna N/A GO:0000028 ... G1TIB4 41037622
    899817 8vft:d (3.3) BS01 rna N/A GO:0002181 ... G1SHG0 41037622
    899818 8vft:dd (3.3) BS01 rna N/A GO:0002181 ... G1U7M4 41037622
    899819 8vft:dd (3.3) BS02 ZN N/A GO:0002181 ... G1U7M4 41037622
    899820 8vft:e (3.3) BS01 rna N/A GO:0003735 ... G1TUN8 41037622
    899821 8vft:e (3.3) BS02 MG N/A GO:0003735 ... G1TUN8 41037622
    899822 8vft:ee (3.3) BS01 rna N/A GO:0003735 ... G1T8A2 41037622
    899823 8vft:f (3.3) BS01 rna N/A GO:0003735 ... G1SF08 41037622
    899824 8vft:f (3.3) BS02 MG N/A GO:0003735 ... G1SF08 41037622
    899825 8vft:ff (3.3) BS01 rna N/A GO:0003735 ... G1SK22 41037622
    899826 8vft:ff (3.3) BS02 ZN N/A GO:0003735 ... G1SK22 41037622
    899827 8vft:g (3.3) BS01 rna N/A GO:0003735 ... G1TXG5 41037622
    899828 8vft:g (3.3) BS02 ZN N/A GO:0003735 ... G1TXG5 41037622
    899829 8vft:g (3.3) BS03 MG N/A GO:0003735 ... G1TXG5 41037622
    899830 8vft:gg (3.3) BS01 rna N/A GO:0001891 ... G1SJB4 41037622
    899831 8vft:h (3.3) BS01 rna N/A GO:0000463 ... G1SIT5 41037622
    899832 8vft:h (3.3) BS02 rna N/A GO:0000463 ... G1SIT5 41037622
    899833 8vft:i (3.3) BS01 rna N/A GO:0003735 ... G1TTQ5 41037622
    899834 8vft:j (3.3) BS01 rna N/A GO:0002181 ... U3KPD5 41037622
    899835 8vft:j (3.3) BS02 rna N/A GO:0002181 ... U3KPD5 41037622
    899836 8vft:j (3.3) BS03 ZN N/A GO:0002181 ... U3KPD5 41037622
    899837 8vft:k (3.3) BS01 rna N/A GO:0003735 ... G1U001 41037622
    899838 8vft:l (3.3) BS01 rna N/A GO:0003735 ... G1TTN1 41037622
    899839 8vft:l (3.3) BS02 rna N/A GO:0003735 ... G1TTN1 41037622
    899840 8vft:m (3.3) BS01 rna N/A GO:0003735 ... A0A2K5PSA0 41037622
    899841 8vft:m (3.3) BS02 ZN N/A GO:0003735 ... A0A2K5PSA0 41037622
    899842 8vft:o (3.3) BS01 rna N/A GO:0003735 ... G1T040 41037622
    899843 8vft:o (3.3) BS02 rna N/A GO:0003735 ... G1T040 41037622
    899844 8vft:o (3.3) BS03 ZN N/A GO:0003735 ... G1T040 41037622
    899845 8vft:o (3.3) BS04 MG N/A GO:0003735 ... G1T040 41037622
    899846 8vft:p (3.3) BS01 rna N/A GO:0003735 ... G1SY53 41037622
    899847 8vft:p (3.3) BS02 rna N/A GO:0003735 ... G1SY53 41037622
    899848 8vft:p (3.3) BS03 ZN N/A GO:0003735 ... G1SY53 41037622
    899849 8vft:r (3.3) BS01 rna N/A GO:0003735 ... G1U7L1 41037622
    899850 8vft:s (3.3) BS01 rna N/A GO:0000027 ... G1SPK4 41037622
    899851 8vft:t (3.3) BS01 rna N/A GO:0003735 ... G1SMR7 41037622
    899852 8vft:v (3.3) BS01 rna N/A GO:0003746 ... P55823 41037622
    899853 8vft:v (3.3) BS02 rna N/A GO:0003746 ... P55823 41037622
    899854 8vft:v (3.3) BS03 rna N/A GO:0003746 ... P55823 41037622
    899855 8vft:v (3.3) BS04 GDP N/A GO:0003746 ... P55823 41037622
    899856 8vfx:A (2.65) BS01 dna N/A GO:0000786 ... P68431 39121853
    899857 8vfx:A (2.65) BS02 dna N/A GO:0000786 ... P68431 39121853
    899858 8vfx:B (2.65) BS01 dna N/A GO:0000781 ... P62805 39121853
    899859 8vfx:B (2.65) BS02 dna N/A GO:0000781 ... P62805 39121853
    899860 8vfx:C (2.65) BS01 dna N/A GO:0000786 ... P04908 39121853
    899861 8vfx:C (2.65) BS02 dna N/A GO:0000786 ... P04908 39121853
    899862 8vfx:D (2.65) BS01 dna N/A GO:0000786 ... P06899 39121853
    899863 8vfx:D (2.65) BS02 dna N/A GO:0000786 ... P06899 39121853
    899864 8vfx:E (2.65) BS01 dna N/A GO:0000786 ... P68431 39121853
    899865 8vfx:E (2.65) BS02 dna N/A GO:0000786 ... P68431 39121853
    899866 8vfx:F (2.65) BS01 dna N/A GO:0000781 ... P62805 39121853
    899867 8vfx:F (2.65) BS02 dna N/A GO:0000781 ... P62805 39121853
    899868 8vfx:G (2.65) BS01 dna N/A GO:0000786 ... P04908 39121853
    899869 8vfx:G (2.65) BS02 dna N/A GO:0000786 ... P04908 39121853
    899870 8vfx:H (2.65) BS01 dna N/A GO:0000786 ... P06899 39121853
    899871 8vfx:H (2.65) BS02 dna N/A GO:0000786 ... P06899 39121853
    899872 8vfy:A (2.89) BS01 dna N/A GO:0000786 ... P68431 39121853
    899873 8vfy:A (2.89) BS02 dna N/A GO:0000786 ... P68431 39121853
    899874 8vfy:B (2.89) BS01 dna N/A GO:0000781 ... P62805 39121853
    899875 8vfy:B (2.89) BS02 dna N/A GO:0000781 ... P62805 39121853
    899876 8vfy:C (2.89) BS01 dna N/A GO:0000786 ... P04908 39121853
    899877 8vfy:C (2.89) BS02 dna N/A GO:0000786 ... P04908 39121853
    899878 8vfy:D (2.89) BS01 dna N/A GO:0000786 ... P06899 39121853
    899879 8vfy:D (2.89) BS02 dna N/A GO:0000786 ... P06899 39121853
    899880 8vfy:E (2.89) BS01 dna N/A GO:0000786 ... P68431 39121853
    899881 8vfy:E (2.89) BS02 dna N/A GO:0000786 ... P68431 39121853
    899882 8vfy:F (2.89) BS01 dna N/A GO:0000781 ... P62805 39121853
    899883 8vfy:F (2.89) BS02 dna N/A GO:0000781 ... P62805 39121853
    899884 8vfy:G (2.89) BS01 dna N/A GO:0000786 ... P04908 39121853
    899885 8vfy:G (2.89) BS02 dna N/A GO:0000786 ... P04908 39121853
    899886 8vfy:H (2.89) BS01 dna N/A GO:0000786 ... P06899 39121853
    899887 8vfy:H (2.89) BS02 dna N/A GO:0000786 ... P06899 39121853
    899888 8vfy:O (2.89) BS01 dna N/A GO:0000785 ... P55317 39121853
    899889 8vfy:O (2.89) BS02 dna N/A GO:0000785 ... P55317 39121853
    899890 8vfz:A (4.1) BS01 dna N/A GO:0000786 ... P68431 39121853
    899891 8vfz:A (4.1) BS02 dna N/A GO:0000786 ... P68431 39121853
    899892 8vfz:B (4.1) BS01 dna N/A GO:0000781 ... P62805 39121853
    899893 8vfz:B (4.1) BS02 dna N/A GO:0000781 ... P62805 39121853
    899894 8vfz:C (4.1) BS01 dna N/A GO:0000786 ... P04908 39121853
    899895 8vfz:C (4.1) BS02 dna N/A GO:0000786 ... P04908 39121853
    899896 8vfz:D (4.1) BS01 dna N/A GO:0000786 ... P06899 39121853
    899897 8vfz:D (4.1) BS02 dna N/A GO:0000786 ... P06899 39121853
    899898 8vfz:E (4.1) BS01 dna N/A GO:0000786 ... P68431 39121853
    899899 8vfz:E (4.1) BS02 dna N/A GO:0000786 ... P68431 39121853
    899900 8vfz:F (4.1) BS01 dna N/A GO:0000781 ... P62805 39121853
    899901 8vfz:F (4.1) BS02 dna N/A GO:0000781 ... P62805 39121853
    899902 8vfz:G (4.1) BS01 dna N/A GO:0000786 ... P04908 39121853
    899903 8vfz:G (4.1) BS02 dna N/A GO:0000786 ... P04908 39121853
    899904 8vfz:H (4.1) BS01 dna N/A GO:0000786 ... P06899 39121853
    899905 8vfz:H (4.1) BS02 dna N/A GO:0000786 ... P06899 39121853
    899906 8vfz:O (4.1) BS01 dna N/A GO:0000785 ... P55317 39121853
    899907 8vfz:O (4.1) BS02 dna N/A GO:0000785 ... P55317 39121853
    899908 8vfz:P (4.1) BS01 dna N/A GO:0000785 ... P55317 39121853
    899909 8vfz:P (4.1) BS02 dna N/A GO:0000785 ... P55317 39121853
    899910 8vg0:A (3.07) BS01 dna N/A GO:0000786 ... P68431 39121853
    899911 8vg0:A (3.07) BS02 dna N/A GO:0000786 ... P68431 39121853
    899912 8vg0:B (3.07) BS01 dna N/A GO:0000781 ... P62805 39121853
    899913 8vg0:B (3.07) BS02 dna N/A GO:0000781 ... P62805 39121853
    899914 8vg0:C (3.07) BS01 dna N/A GO:0000786 ... P04908 39121853
    899915 8vg0:C (3.07) BS02 dna N/A GO:0000786 ... P04908 39121853
    899916 8vg0:D (3.07) BS01 dna N/A GO:0000786 ... P06899 39121853
    899917 8vg0:D (3.07) BS02 dna N/A GO:0000786 ... P06899 39121853
    899918 8vg0:E (3.07) BS01 dna N/A GO:0000786 ... P68431 39121853
    899919 8vg0:E (3.07) BS02 dna N/A GO:0000786 ... P68431 39121853
    899920 8vg0:F (3.07) BS01 dna N/A GO:0000781 ... P62805 39121853
    899921 8vg0:F (3.07) BS02 dna N/A GO:0000781 ... P62805 39121853
    899922 8vg0:G (3.07) BS01 dna N/A GO:0000786 ... P04908 39121853
    899923 8vg0:G (3.07) BS02 dna N/A GO:0000786 ... P04908 39121853
    899924 8vg0:H (3.07) BS01 dna N/A GO:0000786 ... P06899 39121853
    899925 8vg0:H (3.07) BS02 dna N/A GO:0000786 ... P06899 39121853
    899926 8vg0:T (3.07) BS01 dna N/A GO:0000122 ... P0AEX9
    P43694
    39121853
    899927 8vg0:T (3.07) BS02 dna N/A GO:0000122 ... P0AEX9
    P43694
    39121853
    899928 8vg0:T (3.07) BS03 ZN N/A GO:0000122 ... P0AEX9
    P43694
    39121853
    899929 8vg1:A (2.48) BS01 dna N/A GO:0000786 ... P68431 39121853
    899930 8vg1:A (2.48) BS02 dna N/A GO:0000786 ... P68431 39121853
    899931 8vg1:B (2.48) BS01 dna N/A GO:0000781 ... P62805 39121853
    899932 8vg1:B (2.48) BS02 dna N/A GO:0000781 ... P62805 39121853
    899933 8vg1:C (2.48) BS01 dna N/A GO:0000786 ... P04908 39121853
    899934 8vg1:C (2.48) BS02 dna N/A GO:0000786 ... P04908 39121853
    899935 8vg1:D (2.48) BS01 dna N/A GO:0000786 ... P06899 39121853
    899936 8vg1:D (2.48) BS02 dna N/A GO:0000786 ... P06899 39121853
    899937 8vg1:E (2.48) BS01 dna N/A GO:0000786 ... P68431 39121853
    899938 8vg1:E (2.48) BS02 dna N/A GO:0000786 ... P68431 39121853
    899939 8vg1:F (2.48) BS01 dna N/A GO:0000781 ... P62805 39121853
    899940 8vg1:F (2.48) BS02 dna N/A GO:0000781 ... P62805 39121853
    899941 8vg1:G (2.48) BS01 dna N/A GO:0000786 ... P04908 39121853
    899942 8vg1:G (2.48) BS02 dna N/A GO:0000786 ... P04908 39121853
    899943 8vg1:H (2.48) BS01 dna N/A GO:0000786 ... P06899 39121853
    899944 8vg1:H (2.48) BS02 dna N/A GO:0000786 ... P06899 39121853
    899945 8vg1:O (2.48) BS01 dna N/A GO:0000785 ... P55317 39121853
    899946 8vg1:O (2.48) BS02 dna N/A GO:0000785 ... P55317 39121853
    899947 8vg1:T (2.48) BS01 dna N/A GO:0000122 ... P0AEX9
    P43694
    39121853
    899948 8vg1:T (2.48) BS02 dna N/A GO:0000122 ... P0AEX9
    P43694
    39121853
    899949 8vg1:T (2.48) BS03 ZN N/A GO:0000122 ... P0AEX9
    P43694
    39121853
    899950 8vg2:A (3.04) BS01 dna N/A GO:0000786 ... P68431 N/A
    899951 8vg2:A (3.04) BS02 dna N/A GO:0000786 ... P68431 N/A
    899952 8vg2:B (3.04) BS01 dna N/A GO:0000781 ... P62805 N/A
    899953 8vg2:B (3.04) BS02 dna N/A GO:0000781 ... P62805 N/A
    899954 8vg2:C (3.04) BS01 dna N/A GO:0000786 ... P04908 N/A
    899955 8vg2:C (3.04) BS02 dna N/A GO:0000786 ... P04908 N/A
    899956 8vg2:D (3.04) BS01 dna N/A GO:0000786 ... P06899 N/A
    899957 8vg2:D (3.04) BS02 dna N/A GO:0000786 ... P06899 N/A
    899958 8vg2:E (3.04) BS01 dna N/A GO:0000786 ... P68431 N/A
    899959 8vg2:E (3.04) BS02 dna N/A GO:0000786 ... P68431 N/A
    899960 8vg2:F (3.04) BS01 dna N/A GO:0000781 ... P62805 N/A
    899961 8vg2:F (3.04) BS02 dna N/A GO:0000781 ... P62805 N/A
    899962 8vg2:G (3.04) BS01 dna N/A GO:0000786 ... P04908 N/A
    899963 8vg2:G (3.04) BS02 dna N/A GO:0000786 ... P04908 N/A
    899964 8vg2:H (3.04) BS01 dna N/A GO:0000786 ... P06899 N/A
    899965 8vg2:H (3.04) BS02 dna N/A GO:0000786 ... P06899 N/A
    899966 8vg2:O (3.04) BS01 dna N/A GO:0000785 ... P55317 N/A
    899967 8vg2:O (3.04) BS02 dna N/A GO:0000785 ... P55317 N/A
    899968 8vg2:U (3.04) BS01 dna N/A GO:0000785 ... P10412 N/A
    899969 8vg2:U (3.04) BS02 dna N/A GO:0000785 ... P10412 N/A
    899970 8vg4:A (3.11) BS01 NDP N/A GO:0001649 ... P49327 39979457
    899971 8vg4:A (3.11) BS02 NDP N/A GO:0001649 ... P49327 39979457
    899972 8vg4:B (3.11) BS01 NDP N/A GO:0001649 ... P49327 39979457
    899973 8vg4:B (3.11) BS02 NDP N/A GO:0001649 ... P49327 39979457
    899974 8vg5:A (1.5) BS01 7L9 4.1.1.84 GO:0004167 ... P30046 38670943
    899975 8vg8:A (1.33) BS01 7L9 4.1.1.84 GO:0004167 ... P30046 38670943
    899976 8vga:A (2.57602) BS01 MG N/A GO:0001664 ... D8QR00 38569936
    899977 8vga:A (2.57602) BS02 GSP N/A GO:0001664 ... D8QR00 38569936
    899978 8vga:B (2.57602) BS01 MG N/A GO:0001664 ... D8QR00 38569936
    899979 8vga:B (2.57602) BS02 GSP N/A GO:0001664 ... D8QR00 38569936
    899980 8vgb:A (2.99) BS01 GDP N/A GO:0001664 ... A2Y3B5 38569936
    899981 8vgb:B (2.99) BS01 GDP N/A GO:0001664 ... A2Y3B5 38569936
    899982 8vgb:C (2.99) BS01 GDP N/A GO:0001664 ... A2Y3B5 38569936
    899983 8vgb:D (2.99) BS01 GDP N/A GO:0001664 ... A2Y3B5 38569936
    899984 8vgb:D (2.99) BS02 MG N/A GO:0001664 ... A2Y3B5 38569936
    899985 8vgc:A (1.42) BS01 peptide ? GO:0022857 ... P0ABV2 38311172
    899986 8vgc:B (1.42) BS01 peptide ? GO:0022857 ... P0ABV2 38311172
    899987 8vgd:A (1.42) BS01 peptide ? GO:0022857 ... P0ABV2 38311172
    899988 8vgd:B (1.42) BS01 peptide ? GO:0022857 ... P0ABV2 38311172
    899989 8vgp:A (2.7) BS01 CA N/A GO:0007596 ... O15123 38798381
    899990 8vgq:A (2.8) BS01 A1AAW N/A GO:0003924 ... P01116 38798381
    899991 8vgq:A (2.8) BS02 GDP N/A GO:0003924 ... P01116 38798381
    899992 8vgs:A (2.14) BS01 MG N/A GO:0000287 ... A0A150IHQ4 N/A
    899993 8vgs:A (2.14) BS02 MG N/A GO:0000287 ... A0A150IHQ4 N/A
    899994 8vgs:A (2.14) BS03 MG N/A GO:0000287 ... A0A150IHQ4 N/A
    899995 8vgs:A (2.14) BS04 CAP N/A GO:0000287 ... A0A150IHQ4 N/A
    899996 8vgs:A (2.14) BS05 CAP N/A GO:0000287 ... A0A150IHQ4 N/A
    899997 8vgs:B (2.14) BS01 CAP N/A GO:0000287 ... A0A150IHQ4 N/A
    899998 8vgs:B (2.14) BS02 MG N/A GO:0000287 ... A0A150IHQ4 N/A
    899999 8vgs:B (2.14) BS03 MG N/A GO:0000287 ... A0A150IHQ4 N/A
    900000 8vgs:B (2.14) BS04 MG N/A GO:0000287 ... A0A150IHQ4 N/A

    Reference:
  • Chengxin Zhang, Xi Zhang, Lydia Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).