SEQ2FUN

BioLiP
Download all results in tab-seperated text for 1072681 receptor-ligand interactions, whose format is explained at readme.txt.
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  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
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    # PDB
    (Resolution Å)
    Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    900001 8vgs:B (2.14) BS05 CAP N/A GO:0000287 ... A0A150IHQ4 N/A
    900002 8vgs:C (2.14) BS01 MG N/A GO:0000287 ... A0A150IHQ4 N/A
    900003 8vgs:C (2.14) BS02 MG N/A GO:0000287 ... A0A150IHQ4 N/A
    900004 8vgs:C (2.14) BS03 MG N/A GO:0000287 ... A0A150IHQ4 N/A
    900005 8vgs:C (2.14) BS04 CAP N/A GO:0000287 ... A0A150IHQ4 N/A
    900006 8vgs:C (2.14) BS05 CAP N/A GO:0000287 ... A0A150IHQ4 N/A
    900007 8vgs:D (2.14) BS01 MG N/A GO:0000287 ... A0A150IHQ4 N/A
    900008 8vgs:D (2.14) BS02 CAP N/A GO:0000287 ... A0A150IHQ4 N/A
    900009 8vgs:D (2.14) BS03 MG N/A GO:0000287 ... A0A150IHQ4 N/A
    900010 8vgs:D (2.14) BS04 MG N/A GO:0000287 ... A0A150IHQ4 N/A
    900011 8vgs:D (2.14) BS05 CAP N/A GO:0000287 ... A0A150IHQ4 N/A
    900012 8vgs:E (2.14) BS01 MG N/A GO:0000287 ... A0A150IHQ4 N/A
    900013 8vgs:E (2.14) BS02 MG N/A GO:0000287 ... A0A150IHQ4 N/A
    900014 8vgs:E (2.14) BS03 CAP N/A GO:0000287 ... A0A150IHQ4 N/A
    900015 8vgs:E (2.14) BS04 MG N/A GO:0000287 ... A0A150IHQ4 N/A
    900016 8vgs:E (2.14) BS05 CAP N/A GO:0000287 ... A0A150IHQ4 N/A
    900017 8vgs:F (2.14) BS01 MG N/A GO:0000287 ... A0A150IHQ4 N/A
    900018 8vgs:F (2.14) BS02 MG N/A GO:0000287 ... A0A150IHQ4 N/A
    900019 8vgs:F (2.14) BS03 MG N/A GO:0000287 ... A0A150IHQ4 N/A
    900020 8vgs:F (2.14) BS04 CAP N/A GO:0000287 ... A0A150IHQ4 N/A
    900021 8vgs:F (2.14) BS05 CAP N/A GO:0000287 ... A0A150IHQ4 N/A
    900022 8vgs:G (2.14) BS01 MG N/A GO:0000287 ... A0A150IHQ4 N/A
    900023 8vgs:G (2.14) BS02 CAP N/A GO:0000287 ... A0A150IHQ4 N/A
    900024 8vgs:G (2.14) BS03 MG N/A GO:0000287 ... A0A150IHQ4 N/A
    900025 8vgs:G (2.14) BS04 CAP N/A GO:0000287 ... A0A150IHQ4 N/A
    900026 8vgs:G (2.14) BS05 MG N/A GO:0000287 ... A0A150IHQ4 N/A
    900027 8vgs:H (2.14) BS01 MG N/A GO:0000287 ... A0A150IHQ4 N/A
    900028 8vgs:H (2.14) BS02 MG N/A GO:0000287 ... A0A150IHQ4 N/A
    900029 8vgs:H (2.14) BS03 CAP N/A GO:0000287 ... A0A150IHQ4 N/A
    900030 8vgs:H (2.14) BS04 CAP N/A GO:0000287 ... A0A150IHQ4 N/A
    900031 8vgs:H (2.14) BS05 MG N/A GO:0000287 ... A0A150IHQ4 N/A
    900032 8vgs:I (2.14) BS01 CAP N/A GO:0000287 ... A0A150IHQ4 N/A
    900033 8vgs:I (2.14) BS02 MG N/A GO:0000287 ... A0A150IHQ4 N/A
    900034 8vgs:I (2.14) BS03 MG N/A GO:0000287 ... A0A150IHQ4 N/A
    900035 8vgs:I (2.14) BS04 MG N/A GO:0000287 ... A0A150IHQ4 N/A
    900036 8vgs:I (2.14) BS05 CAP N/A GO:0000287 ... A0A150IHQ4 N/A
    900037 8vgs:J (2.14) BS01 MG N/A GO:0000287 ... A0A150IHQ4 N/A
    900038 8vgs:J (2.14) BS02 CAP N/A GO:0000287 ... A0A150IHQ4 N/A
    900039 8vgs:J (2.14) BS03 MG N/A GO:0000287 ... A0A150IHQ4 N/A
    900040 8vgs:J (2.14) BS04 MG N/A GO:0000287 ... A0A150IHQ4 N/A
    900041 8vgs:J (2.14) BS05 CAP N/A GO:0000287 ... A0A150IHQ4 N/A
    900042 8vgu:A (2.03) BS01 MH0 N/A GO:0016020 ... N/A N/A
    900043 8vgu:A (2.03) BS02 MPG N/A GO:0016020 ... N/A N/A
    900044 8vgu:A (2.03) BS03 OXY N/A GO:0016020 ... N/A N/A
    900045 8vgu:B (2.03) BS01 MH0 N/A GO:0016020 ... N/A N/A
    900046 8vgu:B (2.03) BS02 MPG N/A GO:0016020 ... N/A N/A
    900047 8vgu:B (2.03) BS03 MPG N/A GO:0016020 ... N/A N/A
    900048 8vgu:B (2.03) BS04 OXY N/A GO:0016020 ... N/A N/A
    900049 8vgv:D (3.6) BS01 MAN N/A N/A N/A 39489734
    900050 8vgv:D (3.6) BS02 MAN N/A N/A N/A 39489734
    900051 8vgv:H (3.6) BS01 MAN N/A N/A N/A 39489734
    900052 8vgv:L (3.6) BS01 MAN N/A N/A N/A 39489734
    900053 8vgx:A (2.19) BS01 CA N/A GO:0004601 ... O81959 N/A
    900054 8vgx:B (2.19) BS01 CA N/A GO:0004601 ... O81959 N/A
    900055 8vgy:A (2.3) BS01 FAD N/A GO:0016491 ... O95831
    Q8N4Q1
    39806100
    900056 8vgy:C (2.3) BS01 FAD N/A GO:0016491 ... O95831
    Q8N4Q1
    39806100
    900057 8vgz:A (2.09) BS01 MN 3.1.-.- GO:0003723 ... C3W5S0 38190441
    900058 8vgz:A (2.09) BS02 MN 3.1.-.- GO:0003723 ... C3W5S0 38190441
    900059 8vh0:A (2.3) BS01 CA N/A GO:0004601 ... O81959 N/A
    900060 8vh0:B (2.3) BS01 CA N/A GO:0004601 ... O81959 N/A
    900061 8vh4:A (4.1) BS01 GDP N/A GO:0000139 ... Q5S007 39343966
    900062 8vh4:A (4.1) BS02 ANP N/A GO:0000139 ... Q5S007 39343966
    900063 8vh4:B (4.1) BS01 GNP N/A GO:0003924 ... Q6IQ22 39343966
    900064 8vh5:A (4.0) BS01 GDP N/A GO:0000139 ... Q5S007 39343966
    900065 8vh5:A (4.0) BS02 ANP N/A GO:0000139 ... Q5S007 39343966
    900066 8vh5:B (4.0) BS01 GNP N/A GO:0003924 ... Q6IQ22 39343966
    900067 8vh5:C (4.0) BS01 GDP N/A GO:0000139 ... Q5S007 39343966
    900068 8vh5:C (4.0) BS02 ANP N/A GO:0000139 ... Q5S007 39343966
    900069 8vh5:D (4.0) BS01 GNP N/A GO:0003924 ... Q6IQ22 39343966
    900070 8vh7:A (1.982) BS01 UDP N/A N/A Q5SGE1 39990868
    900071 8vh7:A (1.982) BS02 MN N/A N/A Q5SGE1 39990868
    900072 8vh7:A (1.982) BS03 UDP N/A N/A Q5SGE1 39990868
    900073 8vh7:B (1.982) BS01 UDP N/A N/A Q5SGE1 39990868
    900074 8vh7:B (1.982) BS02 MN N/A N/A Q5SGE1 39990868
    900075 8vh7:B (1.982) BS03 UDP N/A N/A Q5SGE1 39990868
    900076 8vh8:A (2.85) BS01 UDP N/A N/A Q5SGE1 39990868
    900077 8vh8:A (2.85) BS02 MN N/A N/A Q5SGE1 39990868
    900078 8vh8:A (2.85) BS03 UDP N/A N/A Q5SGE1 39990868
    900079 8vh8:B (2.85) BS01 UDP N/A N/A Q5SGE1 39990868
    900080 8vh8:B (2.85) BS02 MN N/A N/A Q5SGE1 39990868
    900081 8vh8:B (2.85) BS03 UDP N/A N/A Q5SGE1 39990868
    900082 8vh8:C (2.85) BS01 UDP N/A N/A Q5SGE1 39990868
    900083 8vh8:C (2.85) BS02 MN N/A N/A Q5SGE1 39990868
    900084 8vh8:C (2.85) BS03 UDP N/A N/A Q5SGE1 39990868
    900085 8vh8:D (2.85) BS01 UDP N/A N/A Q5SGE1 39990868
    900086 8vh8:D (2.85) BS02 MN N/A N/A Q5SGE1 39990868
    900087 8vh8:D (2.85) BS03 UDP N/A N/A Q5SGE1 39990868
    900088 8vh9:A (2.13) BS01 NDP 1.1.1.42 GO:0000287 ... O75874 38710674
    900089 8vh9:B (2.13) BS01 NDP 1.1.1.42 GO:0000287 ... O75874 38710674
    900090 8vha:A (2.28) BS01 EE1 1.1.1.42 GO:0000287 ... O75874 38710674
    900091 8vha:A (2.28) BS02 CA 1.1.1.42 GO:0000287 ... O75874 38710674
    900092 8vha:B (2.28) BS01 NDP 1.1.1.42 GO:0000287 ... O75874 38710674
    900093 8vha:B (2.28) BS02 AKG 1.1.1.42 GO:0000287 ... O75874 38710674
    900094 8vha:C (2.28) BS01 EE1 1.1.1.42 GO:0000287 ... O75874 38710674
    900095 8vha:D (2.28) BS01 EE1 1.1.1.42 GO:0000287 ... O75874 38710674
    900096 8vha:D (2.28) BS02 NDP 1.1.1.42 GO:0000287 ... O75874 38710674
    900097 8vhb:A (1.89) BS01 AKG 1.1.1.42 GO:0000287 ... O75874 38710674
    900098 8vhb:A (1.89) BS02 NDP 1.1.1.42 GO:0000287 ... O75874 38710674
    900099 8vhb:B (1.89) BS01 EE1 1.1.1.42 GO:0000287 ... O75874 38710674
    900100 8vhb:C (1.89) BS01 AKG 1.1.1.42 GO:0000287 ... O75874 38710674
    900101 8vhb:C (1.89) BS02 NDP 1.1.1.42 GO:0000287 ... O75874 38710674
    900102 8vhb:D (1.89) BS01 EE1 1.1.1.42 GO:0000287 ... O75874 38710674
    900103 8vhc:A (2.44) BS01 NDP 1.1.1.42 GO:0000287 ... O75874 38710674
    900104 8vhc:B (2.44) BS01 NDP 1.1.1.42 GO:0000287 ... O75874 38710674
    900105 8vhd:A (2.38) BS01 NAP 1.1.1.42 GO:0000287 ... O75874 38710674
    900106 8vhd:A (2.38) BS02 CA 1.1.1.42 GO:0000287 ... O75874 38710674
    900107 8vhd:B (2.38) BS01 NAP 1.1.1.42 GO:0000287 ... O75874 38710674
    900108 8vhd:C (2.38) BS01 NAP 1.1.1.42 GO:0000287 ... O75874 38710674
    900109 8vhd:D (2.38) BS01 NAP 1.1.1.42 GO:0000287 ... O75874 38710674
    900110 8vhd:D (2.38) BS02 NAP 1.1.1.42 GO:0000287 ... O75874 38710674
    900111 8vhd:D (2.38) BS03 CA 1.1.1.42 GO:0000287 ... O75874 38710674
    900112 8vhe:A (2.16) BS01 A1AAX 1.1.1.42 GO:0000287 ... O75874 38710674
    900113 8vhe:A (2.16) BS02 CA 1.1.1.42 GO:0000287 ... O75874 38710674
    900114 8vhe:B (2.16) BS01 A1AAX 1.1.1.42 GO:0000287 ... O75874 38710674
    900115 8vhe:B (2.16) BS02 CA 1.1.1.42 GO:0000287 ... O75874 38710674
    900116 8vhe:C (2.16) BS01 A1AAX 1.1.1.42 GO:0000287 ... O75874 38710674
    900117 8vhe:C (2.16) BS02 CA 1.1.1.42 GO:0000287 ... O75874 38710674
    900118 8vhe:D (2.16) BS01 A1AAX 1.1.1.42 GO:0000287 ... O75874 38710674
    900119 8vhe:D (2.16) BS02 CA 1.1.1.42 GO:0000287 ... O75874 38710674
    900120 8vhf:R (3.51) BS01 8VP N/A GO:0004930 ... P0ABE7
    Q8TDV5
    39471802
    900121 8vhg:A (3.6) BS01 dna N/A GO:0003700 ... P97481 40269168
    900122 8vhh:A (2.15) BS01 PLP N/A GO:0000162 ... P50909 39074291
    900123 8vhh:B (2.15) BS01 PLP N/A GO:0000162 ... P50909 39074291
    900124 8vhl:A (1.93) BS01 FMN 1.3.5.2 GO:0004152 ... Q02127 38505861
    900125 8vhl:A (1.93) BS02 A1AA2 1.3.5.2 GO:0004152 ... Q02127 38505861
    900126 8vhm:A (2.26) BS01 FMN 1.3.5.2 GO:0004152 ... Q02127 38505861
    900127 8vhm:A (2.26) BS02 A1AA1 1.3.5.2 GO:0004152 ... Q02127 38505861
    900128 8vhn:A (2.62) BS01 ATP N/A GO:0004748 ... P00452 39164005
    900129 8vhn:A (2.62) BS02 ATP N/A GO:0004748 ... P00452 39164005
    900130 8vhn:A (2.62) BS03 ATP N/A GO:0004748 ... P00452 39164005
    900131 8vhn:A (2.62) BS04 ATP N/A GO:0004748 ... P00452 39164005
    900132 8vhn:B (2.62) BS01 ATP N/A GO:0004748 ... P00452 39164005
    900133 8vhn:B (2.62) BS02 ATP N/A GO:0004748 ... P00452 39164005
    900134 8vhn:B (2.62) BS03 ATP N/A GO:0004748 ... P00452 39164005
    900135 8vhn:B (2.62) BS04 ATP N/A GO:0004748 ... P00452 39164005
    900136 8vho:A (2.548) BS01 DTP N/A GO:0004748 ... P00452 39164005
    900137 8vho:A (2.548) BS02 DTP N/A GO:0004748 ... P00452 39164005
    900138 8vho:A (2.548) BS03 DTP N/A GO:0004748 ... P00452 39164005
    900139 8vho:B (2.548) BS01 DTP N/A GO:0004748 ... P00452 39164005
    900140 8vho:B (2.548) BS02 DTP N/A GO:0004748 ... P00452 39164005
    900141 8vho:B (2.548) BS03 DTP N/A GO:0004748 ... P00452 39164005
    900142 8vhp:A (2.608) BS01 ATP N/A GO:0004748 ... P00452 39164005
    900143 8vhp:A (2.608) BS02 ATP N/A GO:0004748 ... P00452 39164005
    900144 8vhp:A (2.608) BS03 ATP N/A GO:0004748 ... P00452 39164005
    900145 8vhp:A (2.608) BS04 CDP N/A GO:0004748 ... P00452 39164005
    900146 8vhp:A (2.608) BS05 ATP N/A GO:0004748 ... P00452 39164005
    900147 8vhp:B (2.608) BS01 ATP N/A GO:0004748 ... P00452 39164005
    900148 8vhp:B (2.608) BS02 ATP N/A GO:0004748 ... P00452 39164005
    900149 8vhp:B (2.608) BS03 ATP N/A GO:0004748 ... P00452 39164005
    900150 8vhp:B (2.608) BS04 ATP N/A GO:0004748 ... P00452 39164005
    900151 8vhp:B (2.608) BS05 CDP N/A GO:0004748 ... P00452 39164005
    900152 8vhp:C (2.608) BS01 ATP N/A GO:0004748 ... P00452 39164005
    900153 8vhp:C (2.608) BS02 ATP N/A GO:0004748 ... P00452 39164005
    900154 8vhp:C (2.608) BS03 ATP N/A GO:0004748 ... P00452 39164005
    900155 8vhp:C (2.608) BS04 CDP N/A GO:0004748 ... P00452 39164005
    900156 8vhp:C (2.608) BS05 ATP N/A GO:0004748 ... P00452 39164005
    900157 8vhp:D (2.608) BS01 ATP N/A GO:0004748 ... P00452 39164005
    900158 8vhp:D (2.608) BS02 ATP N/A GO:0004748 ... P00452 39164005
    900159 8vhp:D (2.608) BS03 ATP N/A GO:0004748 ... P00452 39164005
    900160 8vhp:D (2.608) BS04 ATP N/A GO:0004748 ... P00452 39164005
    900161 8vhp:D (2.608) BS05 CDP N/A GO:0004748 ... P00452 39164005
    900162 8vhp:E (2.608) BS01 ATP N/A GO:0004748 ... P00452 39164005
    900163 8vhp:E (2.608) BS02 ATP N/A GO:0004748 ... P00452 39164005
    900164 8vhp:E (2.608) BS03 ATP N/A GO:0004748 ... P00452 39164005
    900165 8vhp:E (2.608) BS04 CDP N/A GO:0004748 ... P00452 39164005
    900166 8vhp:E (2.608) BS05 ATP N/A GO:0004748 ... P00452 39164005
    900167 8vhp:F (2.608) BS01 ATP N/A GO:0004748 ... P00452 39164005
    900168 8vhp:F (2.608) BS02 ATP N/A GO:0004748 ... P00452 39164005
    900169 8vhp:F (2.608) BS03 ATP N/A GO:0004748 ... P00452 39164005
    900170 8vhp:F (2.608) BS04 ATP N/A GO:0004748 ... P00452 39164005
    900171 8vhp:F (2.608) BS05 CDP N/A GO:0004748 ... P00452 39164005
    900172 8vhp:G (2.608) BS01 ATP N/A GO:0004748 ... P00452 39164005
    900173 8vhp:G (2.608) BS02 ATP N/A GO:0004748 ... P00452 39164005
    900174 8vhp:G (2.608) BS03 ATP N/A GO:0004748 ... P00452 39164005
    900175 8vhp:G (2.608) BS04 CDP N/A GO:0004748 ... P00452 39164005
    900176 8vhp:G (2.608) BS05 ATP N/A GO:0004748 ... P00452 39164005
    900177 8vhp:H (2.608) BS01 ATP N/A GO:0004748 ... P00452 39164005
    900178 8vhp:H (2.608) BS02 ATP N/A GO:0004748 ... P00452 39164005
    900179 8vhp:H (2.608) BS03 ATP N/A GO:0004748 ... P00452 39164005
    900180 8vhp:H (2.608) BS04 ATP N/A GO:0004748 ... P00452 39164005
    900181 8vhp:H (2.608) BS05 CDP N/A GO:0004748 ... P00452 39164005
    900182 8vhq:A (3.4) BS01 DTP N/A GO:0004748 ... P00452 39164005
    900183 8vhq:A (3.4) BS02 ATP N/A GO:0004748 ... P00452 39164005
    900184 8vhq:A (3.4) BS03 DTP N/A GO:0004748 ... P00452 39164005
    900185 8vhq:A (3.4) BS04 DTP N/A GO:0004748 ... P00452 39164005
    900186 8vhq:B (3.4) BS01 DTP N/A GO:0004748 ... P00452 39164005
    900187 8vhq:B (3.4) BS02 DTP N/A GO:0004748 ... P00452 39164005
    900188 8vhq:B (3.4) BS03 ATP N/A GO:0004748 ... P00452 39164005
    900189 8vhq:B (3.4) BS04 DTP N/A GO:0004748 ... P00452 39164005
    900190 8vhq:C (3.4) BS01 DTP N/A GO:0004748 ... P00452 39164005
    900191 8vhq:C (3.4) BS02 ATP N/A GO:0004748 ... P00452 39164005
    900192 8vhq:C (3.4) BS03 DTP N/A GO:0004748 ... P00452 39164005
    900193 8vhq:C (3.4) BS04 DTP N/A GO:0004748 ... P00452 39164005
    900194 8vhq:D (3.4) BS01 DTP N/A GO:0004748 ... P00452 39164005
    900195 8vhq:D (3.4) BS02 DTP N/A GO:0004748 ... P00452 39164005
    900196 8vhq:D (3.4) BS03 ATP N/A GO:0004748 ... P00452 39164005
    900197 8vhq:D (3.4) BS04 DTP N/A GO:0004748 ... P00452 39164005
    900198 8vhr:A (3.55) BS01 DTP N/A GO:0004748 ... P00452 39164005
    900199 8vhr:A (3.55) BS02 GTP N/A GO:0004748 ... P00452 39164005
    900200 8vhr:A (3.55) BS03 DTP N/A GO:0004748 ... P00452 39164005

    Reference:
  • Chengxin Zhang, Xi Zhang, Lydia Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).