SEQ2FUN

BioLiP
Download all results in tab-seperated text for 1072681 receptor-ligand interactions, whose format is explained at readme.txt.
  • Hover over PDB to view the title of the structure. Click PDB to view the structure at the RCSB PDB database. Resolution -1.00 means the resolution is unavailable, e.g., for NMR structures.
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  • Hover over Ligand to view the full ligand name. Click Ligand to view the 2D diagram and other detail information of the ligand.
  • Hover over EC number to view the full name of enzymatic activity.
  • Hover over GO terms to view all GO terms.
  • Hover over UniProt to view the protein name.
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    # PDB
    (Resolution Å)
    Site # Ligand EC number GO terms UniProt PubMed Binding
    affinity
    900401 8vj6:B (3.5) BS01 A1AB5 ? GO:0000149 ... P19491 38834914
    900402 8vj6:C (3.5) BS01 A1AB5 ? GO:0000149 ... P19491 38834914
    900403 8vj6:D (3.5) BS01 A1AB5 ? GO:0000149 ... P19491 38834914
    900404 8vj7:A (4.85) BS01 GLU ? GO:0000149 ... P19491 38834914
    900405 8vj7:A (4.85) BS02 A1AB5 ? GO:0000149 ... P19491 38834914
    900406 8vj7:B (4.85) BS01 GLU ? GO:0000149 ... P19491 38834914
    900407 8vj7:B (4.85) BS02 A1AB5 ? GO:0000149 ... P19491 38834914
    900408 8vj7:C (4.85) BS01 GLU ? GO:0000149 ... P19491 38834914
    900409 8vj7:C (4.85) BS02 A1AB5 ? GO:0000149 ... P19491 38834914
    900410 8vj7:D (4.85) BS01 GLU ? GO:0000149 ... P19491 38834914
    900411 8vj7:D (4.85) BS02 A1AB5 ? GO:0000149 ... P19491 38834914
    900412 8vj8:A (1.7) BS01 MN N/A GO:0000303 ... P04179 39013847
    900413 8vj8:B (1.7) BS01 MN N/A GO:0000303 ... P04179 39013847
    900414 8vj9:A (3.3) BS01 peptide N/A GO:0007165 ... P32120 40399676
    900415 8vjd:A (1.57) BS01 peptide N/A GO:0000413 ... Q13526 39531501
    900416 8vjd:A (1.57) BS02 peptide N/A GO:0000413 ... Q13526 39531501
    900417 8vjd:B (1.57) BS01 peptide N/A GO:0000413 ... Q13526 39531501
    900418 8vje:A (1.7) BS01 peptide N/A GO:0000413 ... Q13526 39531501
    900419 8vjf:A (1.7) BS01 peptide N/A GO:0000413 ... Q13526 39531501
    900420 8vjg:A (1.58) BS01 A1ACH N/A GO:0000413 ... Q13526 39531501
    900421 8vjh:D (4.2) BS01 FE N/A GO:0046872 ... M9NUT0 38614087
    900422 8vjj:A (2.53) BS01 ZN ? GO:0001666 ... E9PZQ0 38917010
    900423 8vjj:B (2.53) BS01 ZN ? GO:0001666 ... E9PZQ0 38917010
    900424 8vjj:C (2.53) BS01 ZN ? GO:0001666 ... E9PZQ0 38917010
    900425 8vjj:D (2.53) BS01 ZN ? GO:0001666 ... E9PZQ0 38917010
    900426 8vjk:A (2.92) BS01 ZN ? GO:0001666 ... E9PZQ0 38917010
    900427 8vjk:A (2.92) BS02 CFF ? GO:0001666 ... E9PZQ0 38917010
    900428 8vjk:A (2.92) BS03 ATP ? GO:0001666 ... E9PZQ0 38917010
    900429 8vjk:A (2.92) BS04 CA ? GO:0001666 ... E9PZQ0 38917010
    900430 8vjk:A (2.92) BS05 ATP ? GO:0001666 ... E9PZQ0 38917010
    900431 8vjk:B (2.92) BS01 ZN ? GO:0001666 ... E9PZQ0 38917010
    900432 8vjk:B (2.92) BS02 CFF ? GO:0001666 ... E9PZQ0 38917010
    900433 8vjk:B (2.92) BS03 ATP ? GO:0001666 ... E9PZQ0 38917010
    900434 8vjk:B (2.92) BS04 CA ? GO:0001666 ... E9PZQ0 38917010
    900435 8vjk:B (2.92) BS05 ATP ? GO:0001666 ... E9PZQ0 38917010
    900436 8vjk:C (2.92) BS01 ZN ? GO:0001666 ... E9PZQ0 38917010
    900437 8vjk:C (2.92) BS02 CFF ? GO:0001666 ... E9PZQ0 38917010
    900438 8vjk:C (2.92) BS03 ATP ? GO:0001666 ... E9PZQ0 38917010
    900439 8vjk:C (2.92) BS04 CA ? GO:0001666 ... E9PZQ0 38917010
    900440 8vjk:C (2.92) BS05 ATP ? GO:0001666 ... E9PZQ0 38917010
    900441 8vjk:D (2.92) BS01 ZN ? GO:0001666 ... E9PZQ0 38917010
    900442 8vjk:D (2.92) BS02 CFF ? GO:0001666 ... E9PZQ0 38917010
    900443 8vjk:D (2.92) BS03 ATP ? GO:0001666 ... E9PZQ0 38917010
    900444 8vjk:D (2.92) BS04 CA ? GO:0001666 ... E9PZQ0 38917010
    900445 8vjk:D (2.92) BS05 ATP ? GO:0001666 ... E9PZQ0 38917010
    900446 8vjl:A (3.5) BS01 LMN N/A GO:0005515 ... P26937 39419996
    900447 8vjl:C (3.5) BS01 LMN N/A GO:0005515 ... P26937 39419996
    900448 8vjl:E (3.5) BS01 LMN N/A GO:0005515 ... P26937 39419996
    900449 8vjl:G (3.5) BS01 LMN N/A GO:0005515 ... P26937 39419996
    900450 8vjm:A (4.0) BS01 LMN N/A GO:0005515 ... P26937 39419996
    900451 8vjm:C (4.0) BS01 LMN N/A GO:0005515 ... P26937 39419996
    900452 8vjn:A (2.31) BS01 FMN ? N/A Q1D9P3 38748579
    900453 8vjn:B (2.31) BS01 FMN ? N/A Q1D9P3 38748579
    900454 8vjn:C (2.31) BS01 FMN ? N/A Q1D9P3 38748579
    900455 8vjn:D (2.31) BS01 FMN ? N/A Q1D9P3 38748579
    900456 8vjo:A (2.4) BS01 peptide ? GO:0140737 ... Q1D6H4 38748579
    900457 8vjo:B (2.4) BS01 peptide ? GO:0140737 ... Q1D6H4 38748579
    900458 8vjo:C (2.4) BS01 peptide ? GO:0140737 ... Q1D6H4 38748579
    900459 8vjp:A (1.13) BS01 peptide ? GO:0042981 ... Q07820 38695666
    900460 8vjq:A (3.2) BS01 CA N/A GO:0004601 ... O81959 N/A
    900461 8vjq:B (3.2) BS01 CA N/A GO:0004601 ... O81959 N/A
    900462 8vju:A (1.99) BS01 peptide N/A GO:0004222 ... Q9BYT8 39117724
    900463 8vju:A (1.99) BS02 ZN N/A GO:0004222 ... Q9BYT8 39117724
    900464 8vjv:A (2.12) BS01 peptide N/A GO:0004222 ... Q9BYT8 39117724
    900465 8vjv:A (2.12) BS02 ZN N/A GO:0004222 ... Q9BYT8 39117724
    900466 8vjw:A (2.491) BS01 peptide N/A GO:0004222 ... Q9BYT8 39117724
    900467 8vjw:A (2.491) BS02 peptide N/A GO:0004222 ... Q9BYT8 39117724
    900468 8vjw:A (2.491) BS03 ZN N/A GO:0004222 ... Q9BYT8 39117724
    900469 8vjw:B (2.491) BS01 peptide N/A GO:0004222 ... Q9BYT8 39117724
    900470 8vjw:B (2.491) BS02 peptide N/A GO:0004222 ... Q9BYT8 39117724
    900471 8vjw:B (2.491) BS03 ZN N/A GO:0004222 ... Q9BYT8 39117724
    900472 8vjx:A (2.89) BS01 peptide N/A GO:0004222 ... Q9BYT8 39117724
    900473 8vjx:A (2.89) BS02 ZN N/A GO:0004222 ... Q9BYT8 39117724
    900474 8vjy:A (1.95) BS01 peptide N/A GO:0004222 ... Q9BYT8 39117724
    900475 8vjy:A (1.95) BS02 ZN N/A GO:0004222 ... Q9BYT8 39117724
    900476 8vjy:C (1.95) BS01 peptide N/A GO:0004222 ... Q9BYT8 39117724
    900477 8vjy:C (1.95) BS02 ZN N/A GO:0004222 ... Q9BYT8 39117724
    900478 8vjz:A (1.9) BS01 peptide N/A N/A P04439 39030753
    900479 8vk0:2 (3.14) BS01 rna N/A GO:0003735 ... A0QSG7 39913204
    900480 8vk0:2 (3.14) BS02 rna N/A GO:0003735 ... A0QSG7 39913204
    900481 8vk0:4 (3.14) BS01 rna N/A GO:0003924 ... A0QVY1 39913204
    900482 8vk0:C (3.14) BS01 rna N/A GO:0002181 ... A0QSD4 39913204
    900483 8vk0:D (3.14) BS01 rna N/A GO:0003735 ... A0QSD1 39913204
    900484 8vk0:E (3.14) BS01 rna N/A GO:0003735 ... A0QSD2 39913204
    900485 8vk0:F (3.14) BS01 rna N/A GO:0000049 ... A0QSG1 39913204
    900486 8vk0:F (3.14) BS02 rna N/A GO:0000049 ... A0QSG1 39913204
    900487 8vk0:G (3.14) BS01 rna N/A GO:0002181 ... A0QSG4 39913204
    900488 8vk0:H (3.14) BS01 rna N/A GO:0003735 ... A0R7F6 39913204
    900489 8vk0:I (3.14) BS01 rna N/A GO:0003735 ... A0QS62 39913204
    900490 8vk0:J (3.14) BS01 rna N/A GO:0003735 ... A0QS45 39913204
    900491 8vk0:K (3.14) BS01 rna N/A GO:0003729 ... A0QSP8 39913204
    900492 8vk0:L (3.14) BS01 rna N/A GO:0003735 ... A0QSF9 39913204
    900493 8vk0:M (3.14) BS01 rna N/A GO:0003735 ... A0QSG8 39913204
    900494 8vk0:N (3.14) BS01 rna N/A GO:0003735 ... A0QSD8 39913204
    900495 8vk0:O (3.14) BS01 rna N/A GO:0003735 ... A0QSL9 39913204
    900496 8vk0:P (3.14) BS01 rna N/A GO:0003735 ... A0QSG5 39913204
    900497 8vk0:P (3.14) BS02 rna N/A GO:0003735 ... A0QSG5 39913204
    900498 8vk0:Q (3.14) BS01 rna N/A GO:0003735 ... A0QV42 39913204
    900499 8vk0:R (3.14) BS01 rna N/A GO:0000027 ... A0QYU6 39913204
    900500 8vk0:S (3.14) BS01 rna N/A GO:0003723 ... A0R151 39913204
    900501 8vk0:T (3.14) BS01 rna N/A GO:0003735 ... A0QSD6 39913204
    900502 8vk0:U (3.14) BS01 rna N/A GO:0003735 ... A0QSD3 39913204
    900503 8vk0:V (3.14) BS01 rna N/A GO:0003723 ... A0QSG0 39913204
    900504 8vk0:W (3.14) BS01 rna N/A GO:0003723 ... A0R3D2 39913204
    900505 8vk0:X (3.14) BS01 rna N/A GO:0003735 ... A0R150 39913204
    900506 8vk0:Y (3.14) BS01 rna N/A GO:0003735 ... A0QV03 39913204
    900507 8vk0:Z (3.14) BS01 rna N/A GO:0003735 ... A0QSD9 39913204
    900508 8vk0:b (3.14) BS01 rna N/A GO:0003735 ... A0R3I9 39913204
    900509 8vk0:c (3.14) BS01 rna N/A GO:0003735 ... A0QS39 39913204
    900510 8vk0:d (3.14) BS01 rna N/A GO:0003735 ... A0R7K0 39913204
    900511 8vk0:e (3.14) BS01 rna N/A GO:0003735 ... A0QYU7 39913204
    900512 8vk0:f (3.14) BS01 rna N/A GO:0003735 ... A0QSL4 39913204
    900513 8vk0:g (3.14) BS01 rna N/A GO:0003735 ... A0R215 39913204
    900514 8vk3:A (3.21) BS01 ZN ? GO:0001666 ... E9PZQ0 38917010
    900515 8vk3:B (3.21) BS01 ZN ? GO:0001666 ... E9PZQ0 38917010
    900516 8vk3:C (3.21) BS01 ZN ? GO:0001666 ... E9PZQ0 38917010
    900517 8vk3:D (3.21) BS01 ZN ? GO:0001666 ... E9PZQ0 38917010
    900518 8vk4:A (3.56) BS01 ZN ? GO:0001666 ... E9PZQ0 38917010
    900519 8vk4:A (3.56) BS02 CFF ? GO:0001666 ... E9PZQ0 38917010
    900520 8vk4:A (3.56) BS03 ATP ? GO:0001666 ... E9PZQ0 38917010
    900521 8vk4:A (3.56) BS04 CA ? GO:0001666 ... E9PZQ0 38917010
    900522 8vk4:A (3.56) BS05 ATP ? GO:0001666 ... E9PZQ0 38917010
    900523 8vk4:B (3.56) BS01 ZN ? GO:0001666 ... E9PZQ0 38917010
    900524 8vk4:B (3.56) BS02 CFF ? GO:0001666 ... E9PZQ0 38917010
    900525 8vk4:B (3.56) BS03 ATP ? GO:0001666 ... E9PZQ0 38917010
    900526 8vk4:B (3.56) BS04 CA ? GO:0001666 ... E9PZQ0 38917010
    900527 8vk4:B (3.56) BS05 ATP ? GO:0001666 ... E9PZQ0 38917010
    900528 8vk4:C (3.56) BS01 ZN ? GO:0001666 ... E9PZQ0 38917010
    900529 8vk4:C (3.56) BS02 CFF ? GO:0001666 ... E9PZQ0 38917010
    900530 8vk4:C (3.56) BS03 ATP ? GO:0001666 ... E9PZQ0 38917010
    900531 8vk4:C (3.56) BS04 CA ? GO:0001666 ... E9PZQ0 38917010
    900532 8vk4:C (3.56) BS05 ATP ? GO:0001666 ... E9PZQ0 38917010
    900533 8vk4:D (3.56) BS01 ZN ? GO:0001666 ... E9PZQ0 38917010
    900534 8vk4:D (3.56) BS02 CFF ? GO:0001666 ... E9PZQ0 38917010
    900535 8vk4:D (3.56) BS03 ATP ? GO:0001666 ... E9PZQ0 38917010
    900536 8vk4:D (3.56) BS04 CA ? GO:0001666 ... E9PZQ0 38917010
    900537 8vk4:D (3.56) BS05 ATP ? GO:0001666 ... E9PZQ0 38917010
    900538 8vk4:I (3.56) BS01 CA ? GO:0000122 ... P56565 38917010
    900539 8vk4:I (3.56) BS02 CA ? GO:0000122 ... P56565 38917010
    900540 8vk4:J (3.56) BS01 CA ? GO:0000122 ... P56565 38917010
    900541 8vk4:J (3.56) BS02 CA ? GO:0000122 ... P56565 38917010
    900542 8vk4:K (3.56) BS01 CA ? GO:0000122 ... P56565 38917010
    900543 8vk4:K (3.56) BS02 CA ? GO:0000122 ... P56565 38917010
    900544 8vk4:L (3.56) BS01 CA ? GO:0000122 ... P56565 38917010
    900545 8vk4:L (3.56) BS02 CA ? GO:0000122 ... P56565 38917010
    900546 8vk4:M (3.56) BS01 CA ? GO:0000122 ... P56565 38917010
    900547 8vk4:M (3.56) BS02 CA ? GO:0000122 ... P56565 38917010
    900548 8vk4:N (3.56) BS01 CA ? GO:0000122 ... P56565 38917010
    900549 8vk4:N (3.56) BS02 CA ? GO:0000122 ... P56565 38917010
    900550 8vk4:O (3.56) BS01 CA ? GO:0000122 ... P56565 38917010
    900551 8vk4:O (3.56) BS02 CA ? GO:0000122 ... P56565 38917010
    900552 8vk4:P (3.56) BS01 CA ? GO:0000122 ... P56565 38917010
    900553 8vk4:P (3.56) BS02 CA ? GO:0000122 ... P56565 38917010
    900554 8vk5:E (1.56) BS01 FUC N/A GO:0000122 ... P08246 N/A
    900555 8vk6:A (1.89) BS01 HEM N/A GO:0004497 ... P10614 40403151
    900556 8vk6:A (1.89) BS02 A1AB6 N/A GO:0004497 ... P10614 40403151
    900557 8vk7:2 (3.09) BS01 rna N/A GO:0003735 ... A0QSG7 39913204
    900558 8vk7:2 (3.09) BS02 rna N/A GO:0003735 ... A0QSG7 39913204
    900559 8vk7:4 (3.09) BS01 rna N/A GO:0003924 ... A0QVY1 39913204
    900560 8vk7:C (3.09) BS01 rna N/A GO:0002181 ... A0QSD4 39913204
    900561 8vk7:D (3.09) BS01 rna N/A GO:0003735 ... A0QSD1 39913204
    900562 8vk7:E (3.09) BS01 rna N/A GO:0003735 ... A0QSD2 39913204
    900563 8vk7:F (3.09) BS01 rna N/A GO:0000049 ... A0QSG1 39913204
    900564 8vk7:F (3.09) BS02 rna N/A GO:0000049 ... A0QSG1 39913204
    900565 8vk7:G (3.09) BS01 rna N/A GO:0002181 ... A0QSG4 39913204
    900566 8vk7:H (3.09) BS01 rna N/A GO:0003735 ... A0R7F6 39913204
    900567 8vk7:I (3.09) BS01 rna N/A GO:0003735 ... A0QS62 39913204
    900568 8vk7:J (3.09) BS01 rna N/A GO:0003735 ... A0QS45 39913204
    900569 8vk7:K (3.09) BS01 rna N/A GO:0003729 ... A0QSP8 39913204
    900570 8vk7:L (3.09) BS01 rna N/A GO:0003735 ... A0QSF9 39913204
    900571 8vk7:M (3.09) BS01 rna N/A GO:0003735 ... A0QSG8 39913204
    900572 8vk7:N (3.09) BS01 rna N/A GO:0003735 ... A0QSD8 39913204
    900573 8vk7:O (3.09) BS01 rna N/A GO:0003735 ... A0QSL9 39913204
    900574 8vk7:P (3.09) BS01 rna N/A GO:0003735 ... A0QSG5 39913204
    900575 8vk7:P (3.09) BS02 rna N/A GO:0003735 ... A0QSG5 39913204
    900576 8vk7:Q (3.09) BS01 rna N/A GO:0003735 ... A0QV42 39913204
    900577 8vk7:R (3.09) BS01 rna N/A GO:0000027 ... A0QYU6 39913204
    900578 8vk7:S (3.09) BS01 rna N/A GO:0003723 ... A0R151 39913204
    900579 8vk7:T (3.09) BS01 rna N/A GO:0003735 ... A0QSD6 39913204
    900580 8vk7:U (3.09) BS01 rna N/A GO:0003735 ... A0QSD3 39913204
    900581 8vk7:V (3.09) BS01 rna N/A GO:0003723 ... A0QSG0 39913204
    900582 8vk7:W (3.09) BS01 rna N/A GO:0003723 ... A0R3D2 39913204
    900583 8vk7:X (3.09) BS01 rna N/A GO:0003735 ... A0R150 39913204
    900584 8vk7:Y (3.09) BS01 rna N/A GO:0003735 ... A0QV03 39913204
    900585 8vk7:Z (3.09) BS01 rna N/A GO:0003735 ... A0QSD9 39913204
    900586 8vk7:b (3.09) BS01 rna N/A GO:0003735 ... A0R3I9 39913204
    900587 8vk7:c (3.09) BS01 rna N/A GO:0003735 ... A0QS39 39913204
    900588 8vk7:d (3.09) BS01 rna N/A GO:0003735 ... A0R7K0 39913204
    900589 8vk7:e (3.09) BS01 rna N/A GO:0003735 ... A0QYU7 39913204
    900590 8vk7:f (3.09) BS01 rna N/A GO:0003735 ... A0QSL4 39913204
    900591 8vk7:g (3.09) BS01 rna N/A GO:0003735 ... A0R215 39913204
    900592 8vka:A (1.97) BS01 MYA N/A GO:0004379 ... A5K1A2 38680035
    900593 8vka:A (1.97) BS02 A1AB7 N/A GO:0004379 ... A5K1A2 38680035
    900594 8vka:B (1.97) BS01 MYA N/A GO:0004379 ... A5K1A2 38680035
    900595 8vka:B (1.97) BS02 A1AB7 N/A GO:0004379 ... A5K1A2 38680035
    900596 8vka:C (1.97) BS01 MYA N/A GO:0004379 ... A5K1A2 38680035
    900597 8vka:C (1.97) BS02 A1AB7 N/A GO:0004379 ... A5K1A2 38680035
    900598 8vkb:A (2.43) BS01 MYA N/A GO:0004379 ... A5K1A2 38680035
    900599 8vkb:A (2.43) BS02 A1AB8 N/A GO:0004379 ... A5K1A2 38680035
    900600 8vkb:B (2.43) BS01 MYA N/A GO:0004379 ... A5K1A2 38680035

    Reference:
  • Chengxin Zhang, Xi Zhang, Lydia Freddolino, and Yang Zhang. BioLiP2: an updated structure database for biologically relevent ligand-protein interactions, Nucleic Acids Research, gkad630 (2023).
  • Jianyi Yang, Ambrish Roy, and Yang Zhang. BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions, Nucleic Acids Research, 41: D1096-D1103 (2013) (download the PDF file).